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1.
Allergy ; 68(6): 732-8, 2013 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-23621380

RESUMO

BACKGROUND: It is commonly acknowledged that asthma is exacerbated by viral infections. On the other hand, basophil infiltration of lung tissues has been evidenced postmortem in cases of fatal disease, raising the question of a possible link between these two observations. OBJECTIVES: Herein, we addressed the relationship between asthma exacerbation by viral infection and basophil activation and expansion by investigating how stimulation with the dsRNA polyadenylic/polyuridylic acid [poly(A:U)] affected basophil activities and recruitment in an allergic airway inflammation model. METHODS: The effect of dsRNA on basophils was assessed by measuring the cytokine levels produced upon stimulation. We used an OVA-induced experimental model of allergic asthma. Airway hyperreactivity, recruitment of infiltrating cells, and cytokine production were determined in the lung of mice having received poly(A:U), as compared with untreated controls. The exacerbating effect of basophils was assessed both by adoptive transfer of poly(A:U)-treated basophils and by their in vivo depletion with Ba103 antibody. RESULTS: We found that in vitro treatment with poly(A:U) increased basophil functions by inducing TH 2-type cytokine and histamine production, whereas in vivo treatment increased peripheral basophil recruitment. Furthermore, we provide the first demonstration for increased infiltration of basophils in the lung of mice suffering from airway inflammation. In this model, disease symptoms were clearly exacerbated upon adoptive transfer of basophils exposed to poly(A:U), relative to their unstimulated counterpart. Conversely, in vivo basophil depletion alleviated disease syndromes, thus validating the transfer data. CONCLUSIONS: Our findings provide the first evidence for airway inflammation exacerbation by basophils following dsRNA stimulation.


Assuntos
Asma/imunologia , Basófilos/metabolismo , Pulmão/imunologia , Poli A-U/metabolismo , RNA de Cadeia Dupla/metabolismo , Animais , Asma/virologia , Biomarcadores/metabolismo , Células Cultivadas , Citocinas/metabolismo , Progressão da Doença , Feminino , Citometria de Fluxo , Histamina/metabolismo , Pulmão/virologia , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Endogâmicos NOD , Camundongos Knockout , Poli A-U/administração & dosagem , Células Th2/metabolismo
2.
PLoS One ; 7(10): e46804, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23071641

RESUMO

Bovine seminal (BS) RNase, the unique natively dimeric member of the RNase super-family, represents a special case not only for its additional biological actions but also for the singular features of 3D domain swapping. The native enzyme is indeed a mixture of two isoforms: M = M, a dimer held together by two inter-subunit disulfide bonds, and MxM, 70% of the total, which, besides the two mentioned disulfides, is additionally stabilized by the swapping of its N-termini.When lyophilized from 40% acetic acid, BS-RNase oligomerizes as the super-family proto-type RNase A does. In this paper, we induced BS-RNase self-association and analyzed the multimers by size-exclusion chromatography, cross-linking, electrophoresis, mutagenesis, dynamic light scattering, molecular modelling. Finally, we evaluated their enzymatic and cytotoxic activities.Several BS-RNase domain-swapped oligomers were detected, including two tetramers, one exchanging only the N-termini, the other being either N- or C-swapped. The C-swapping event, confirmed by results on a BS-K113N mutant, has been firstly seen in BS-RNase here, and probably stabilizes also multimers larger than tetramers.Interestingly, all BS-RNase oligomers are more enzymatically active than the native dimer and, above all, they display a cytotoxic activity that definitely increases with the molecular weight of the multimers. This latter feature, to date unknown for BS-RNase, suggests again that the self-association of RNases strongly modulates their biological and potentially therapeutic properties.


Assuntos
Endorribonucleases/química , Modelos Moleculares , Multimerização Proteica , Estrutura Terciária de Proteína , Ácido Acético/química , Animais , Antineoplásicos/química , Antineoplásicos/metabolismo , Antineoplásicos/farmacologia , Bovinos , Sobrevivência Celular/efeitos dos fármacos , Células Cultivadas , Cromatografia em Gel , Reagentes de Ligações Cruzadas/química , Dinitrofluorbenzeno/análogos & derivados , Dinitrofluorbenzeno/química , Dissulfetos/química , Eletroforese em Gel de Poliacrilamida , Endorribonucleases/genética , Endorribonucleases/metabolismo , Estabilidade Enzimática , Cinética , Masculino , Mutação , Poli A-U/metabolismo , Especificidade por Substrato , Temperatura
3.
Mol Biosyst ; 8(7): 1958-69, 2012 Jul 06.
Artigo em Inglês | MEDLINE | ID: mdl-22596256

RESUMO

The plant alkaloid aristololactam-ß-d-glucoside and the anticancer chemotherapy drug daunomycin are two sugar bearing DNA binding antibiotics. The binding of these molecules to three double stranded ribonucleic acids, poly(A)·poly(U), poly(I)·poly(C) and poly(C)·poly(G), was studied using various biophysical techniques. Absorbance and fluorescence studies revealed that these molecules bound non-cooperatively to these ds RNAs with the binding affinities of the order 10(6) for daunomycin and 10(5) M(-1) for aristololactam-ß-d-glucoside. Fluorescence quenching and viscosity studies gave evidence for intercalative binding. The binding enhanced the melting temperature of poly(A)·poly(U) and poly(I)·poly(C) and the binding affinity values evaluated from the melting data were in agreement with that obtained from other techniques. Circular dichroism results suggested minor conformational perturbations of the RNA structures. The binding was characterized by negative enthalpy and positive entropy changes and the affinity constants derived from calorimetry were in agreement with that obtained from spectroscopic data. Daunomycin bound all the three RNAs stronger than aristololactam-ß-d-glucoside and the binding affinity varied as poly(A)·poly(U) > poly(I)·poly(C) > poly(C)·poly(G). The temperature dependence of the enthalpy changes yielded negative values of heat capacity changes for the complexation suggesting substantial hydrophobic contribution to the binding process. Furthermore, an enthalpy-entropy compensation behavior was also seen in all systems. These results provide new insights into binding of these small molecule drugs to double stranded RNA sequences.


Assuntos
Antineoplásicos/metabolismo , Ácidos Aristolóquicos/metabolismo , Daunorrubicina/metabolismo , Glucosídeos/metabolismo , RNA de Cadeia Dupla/metabolismo , Sítios de Ligação , Calorimetria , Conformação de Ácido Nucleico , Poli A-U/química , Poli A-U/metabolismo , Poli I-C/química , Poli I-C/metabolismo , Interferência de RNA , Termodinâmica
4.
Nucleic Acids Res ; 39(2): 648-65, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-20798176

RESUMO

Eukaryotic ribosome biogenesis requires the function of a large number of trans-acting factors which interact transiently with the nascent pre-rRNA and dissociate as the ribosomal subunits proceed to maturation and export to the cytoplasm. Loss-of-function mutations in human trans-acting factors or ribosome components may lead to genetic syndromes. In a previous study, we have shown association between the SBDS (Shwachman-Bodian-Diamond syndrome) and NIP7 proteins and that downregulation of SBDS in HEK293 affects gene expression at the transcriptional and translational levels. In this study, we show that downregulation of NIP7 affects pre-rRNA processing, causing an imbalance of the 40S/60S subunit ratio. We also identified defects at the pre-rRNA processing level with a decrease of the 34S pre-rRNA concentration and an increase of the 26S and 21S pre-rRNA concentrations, indicating that processing at site 2 is particularly slower in NIP7-depleted cells and showing that NIP7 is required for maturation of the 18S rRNA. The NIP7 protein is restricted to the nuclear compartment and co-sediments with complexes with molecular masses in the range of 40S-80S, suggesting an association to nucleolar pre-ribosomal particles. Downregulation of NIP7 affects cell proliferation, consistently with an important role for NIP7 in rRNA biosynthesis in human cells.


Assuntos
Proteínas Nucleares/fisiologia , Precursores de RNA/metabolismo , Processamento Pós-Transcricional do RNA , RNA Ribossômico/metabolismo , Linhagem Celular , Estruturas do Núcleo Celular/química , Técnicas de Silenciamento de Genes , Células HEK293 , Humanos , Proteínas Nucleares/antagonistas & inibidores , Proteínas Nucleares/genética , Poli A-U/metabolismo , Poli U/metabolismo , Polirribossomos/química , RNA/química , RNA/metabolismo , Precursores de RNA/química , RNA Ribossômico/química
5.
BMC Biochem ; 11: 22, 2010 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-20507607

RESUMO

BACKGROUND: The archaeal exosome is formed by a hexameric RNase PH ring and three RNA binding subunits and has been shown to bind and degrade RNA in vitro. Despite extensive studies on the eukaryotic exosome and on the proteins interacting with this complex, little information is yet available on the identification and function of archaeal exosome regulatory factors. RESULTS: Here, we show that the proteins PaSBDS and PaNip7, which bind preferentially to poly-A and AU-rich RNAs, respectively, affect the Pyrococcus abyssi exosome activity in vitro. PaSBDS inhibits slightly degradation of a poly-rA substrate, while PaNip7 strongly inhibits the degradation of poly-A and poly-AU by the exosome. The exosome inhibition by PaNip7 appears to depend at least partially on its interaction with RNA, since mutants of PaNip7 that no longer bind RNA, inhibit the exosome less strongly. We also show that FITC-labeled PaNip7 associates with the exosome in the absence of substrate RNA. CONCLUSIONS: Given the high structural homology between the archaeal and eukaryotic proteins, the effect of archaeal Nip7 and SBDS on the exosome provides a model for an evolutionarily conserved exosome control mechanism.


Assuntos
Proteínas Arqueais/metabolismo , Exorribonucleases/metabolismo , Proteínas Arqueais/química , Exorribonucleases/química , Poli A/química , Poli A/metabolismo , Poli A-U/química , Poli A-U/metabolismo , Ligação Proteica , Pyrococcus abyssi/metabolismo , Estabilidade de RNA , RNA Arqueal/metabolismo
6.
Mol Biosyst ; 6(7): 1265-76, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20442937

RESUMO

Elucidation of the molecular aspects of small molecule-RNA complexation is of prime importance for rational RNA targeted drug design strategies. Towards this, the interaction of the cytotoxic plant alkaloid sanguinarine to three double stranded ribonucleic acids, poly (A).poly(U), poly(I).poly(C) and poly(C).poly(G) was studied using various biophysical and thermodynamic techniques. Absorbance and fluorescence studies showed that the alkaloid bound cooperatively to these RNAs with binding affinities of the order 10(4) M(-1). Fluorescence quenching and hydrodynamic studies gave evidence for intercalation of sanguinarine to these RNA duplexes. Isothermal titration calorimetric studies revealed that the binding was characterized by negative enthalpy and positive entropy changes and the affinity constants derived were in agreement with the overall binding affinity values obtained from spectroscopic data. The binding of sanguinarine stabilized the melting of poly(A). poly(U) and poly(I).poly(C) and the binding data evaluated from the melting data were in agreement with that obtained from other techniques. The overall binding affinity of sanguinarine to these double stranded RNAs varied in the order, poly(A).poly(U) > poly(I).poly(C) >> poly(C).poly(G). The temperature dependence of the enthalpy changes afforded negative values of heat capacity changes for the binding of sanguinarine to poly(A).poly(U) and poly(I).poly(C), suggesting substantial hydrophobic contribution in the binding process. Further, enthalpy-entropy compensation phenomena was also seen in poly(A).poly(U) and poly(I).poly(C) systems that correlated to the strong binding involving a multiplicity of weak noncovalent interactions compared to the weak binding with poly(C).poly(G). These results further advance our understanding on the binding of small molecules that are specific binders to double stranded RNA sequences.


Assuntos
Antineoplásicos/química , Benzofenantridinas/química , Isoquinolinas/química , RNA de Cadeia Dupla/química , Alcaloides/química , Alcaloides/metabolismo , Antineoplásicos/metabolismo , Benzofenantridinas/metabolismo , Sítios de Ligação , Ligação Competitiva , Varredura Diferencial de Calorimetria , Dicroísmo Circular , Isoquinolinas/metabolismo , Estrutura Molecular , Poli A-U/química , Poli A-U/metabolismo , Poli C/química , Poli C/metabolismo , Poli G/química , Poli G/metabolismo , Poli I-C/química , Poli I-C/metabolismo , RNA de Cadeia Dupla/metabolismo , Espectrofotometria/métodos , Termodinâmica , Temperatura de Transição
7.
EMBO J ; 25(24): 5907-18, 2006 Dec 13.
Artigo em Inglês | MEDLINE | ID: mdl-17139246

RESUMO

Plastid translational control depends to a large extent on the light conditions, and is presumably mediated by nucleus-encoded proteins acting on organelle gene expression. However, the molecular mechanisms of light signalling involved in translation are still poorly understood. We investigated the role of the Arabidopsis ortholog of Tab2, a nuclear gene specifically required for translation of the PsaB photosystem I subunit in the unicellular alga Chlamydomonas. Inactivation of ATAB2 strongly affects Arabidopsis development and thylakoid membrane biogenesis and leads to an albino phenotype. Moreover the rate of synthesis of the photosystem reaction center subunits is decreased and the association of their mRNAs with polysomes is affected. ATAB2 is a chloroplast A/U-rich RNA-binding protein that presumably functions as an activator of translation with at least two targets, one for each photosystem. During early seedling development, ATAB2 blue-light induction is lowered in photoreceptor mutants, notably in those lacking cryptochromes. Considering its role in protein synthesis and its photoreceptor-mediated expression, ATAB2 represents a novel factor in the signalling pathway of light-controlled translation of photosystem proteins during early plant development.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Luz , Complexo de Proteína do Fotossistema I/biossíntese , Complexo de Proteína do Fotossistema II/biossíntese , Proteínas de Ligação a RNA/metabolismo , Transdução de Sinais , Animais , Arabidopsis/genética , Arabidopsis/crescimento & desenvolvimento , Arabidopsis/efeitos da radiação , Proteínas de Arabidopsis/genética , Chlamydomonas , Cloroplastos/efeitos da radiação , Cloroplastos/ultraestrutura , Éxons/genética , Regulação da Expressão Gênica de Plantas/efeitos da radiação , Mutagênese Insercional , Proteínas Mutantes/metabolismo , Mutação/genética , Fenótipo , Células Fotorreceptoras/metabolismo , Folhas de Planta/efeitos da radiação , Folhas de Planta/ultraestrutura , Plantas Geneticamente Modificadas , Poli A-U/metabolismo , Polirribossomos/efeitos da radiação , Biossíntese de Proteínas/efeitos da radiação , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Proteínas de Ligação a RNA/genética , Plântula/crescimento & desenvolvimento , Plântula/efeitos da radiação , Transcrição Gênica/efeitos da radiação
8.
J Biomol Struct Dyn ; 24(1): 67-74, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16780377

RESUMO

We employed UV light absorption and circular dichroism (CD) spectroscopic measurements to study the binding of novel water-soluble porphyrins meso-tetra-(4N-allylpyridyl)porphyrin [TAlPyP4], and its Ag containing derivative to the poly(rA)poly(rU) and poly(rI)poly(rC) RNA duplexes. Our results suggest that TAlPyP4 associate with the duplexes via intercalation, whereas the conservative CD spectra indicates that AgTAlPyP4 preferably binds via outside self-stacking mode. We used our determined binding isotherms for each ligand-RNA binding event to calculate the binding constant, Kb, and binding free energy, DeltaGb = -RTlnKb. By performing these experiments as a function of temperature, we evaluated the van't Hoff binding enthalpies, DeltaH. The binding entropies, DeltaSb, were calculated as DeltaSb = (DeltaHb - DeltaGb)/T. We interpret our data in terms of specific interactions that stabilize/destabilize each ligand-RNA complex studied in this work. Taken together, our data provide important new information about the thermodynamics of interactions of porphyrins with nucleic acids.


Assuntos
Poli A-U/metabolismo , Poli I-C/metabolismo , Porfirinas/metabolismo , Termodinâmica , Poli A-U/química , Poli I-C/química , Porfirinas/química
9.
Org Biomol Chem ; 4(9): 1755-9, 2006 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-16633568

RESUMO

The affinities of polyamines consisting of ethylenediamine units equipped with either one or two terminal naphthyl-, anthryl-, or acridyl units towards PolyA.PolyU as an RNA model, and Poly(dA).Poly(dT) as a DNA model are screened by measuring the melting point changes (DeltaT(m)) of the double strands, and also partially by a fluorimetric binding assay using ethidium bromide. The larger aromatic moieties with long spacers between them allow bisintercalation; this leads to an increased preference for DNA in comparison to RNA, where ion pairing of the ammonium centers with the major RNA groove phosphates dominates. Allosteric affinity control by metalation is achieved e.g. with Cu(2+) ions, which induce conformational distortions within the chains. With anthryl- in contrast to naphthyl derivatives intercalation can be so strong that distortion of the ethylenediamine chain by metalation is not powerful enough. A particularly high concentration of positive charges is accessible with tripodal derivatives built up from ethylenediamine and propylenediamine units; in the absence of aryl parts, which interfere with the RNA groove preference, one observes the highest affinity difference known until today, reflected in a melting point ratio of DeltaT(m(RNA))/DeltaT(m(DNA)) = 40, whereas other synthetic ligands reach only a DeltaT(m(RNA))/DeltaT(m(DNA)) ratio of about 3.


Assuntos
Cobre/farmacologia , DNA/química , Diaminas/química , RNA/química , Sítios de Ligação , DNA/metabolismo , Diaminas/farmacologia , Substâncias Intercalantes , Modelos Moleculares , Desnaturação de Ácido Nucleico/efeitos dos fármacos , Poli A-U/química , Poli A-U/metabolismo , Poli dA-dT/química , Poli dA-dT/metabolismo , RNA/metabolismo
10.
Biochemistry ; 42(39): 11391-403, 2003 Oct 07.
Artigo em Inglês | MEDLINE | ID: mdl-14516190

RESUMO

Semisynthetic aminoglycoside derivatives may provide a means to selectively target viral RNA sites, including the HIV-1 Rev response element (RRE). The design, synthesis, and evaluation of derivatives based upon neomycin B, kanamycin A, and tobramycin conjugates of 9-aminoacridine are presented. To evaluate the importance of the acridine moiety, a series of dimeric aminoglycosides as well as unmodified "monomeric" aminoglycosides have also been evaluated for their nucleic acid affinity and specificity. Fluorescence-based binding assays that use ethidium bromide or Rev peptide displacement are used to quantify the affinities of these compounds to various nucleic acids, including the RRE, tRNA, and duplex DNA. All the modified aminoglycosides exhibit a high affinity for the Rev binding site on the RRE (K(d)

Assuntos
Acridinas/metabolismo , Antibacterianos/metabolismo , Produtos do Gene rev/genética , Produtos do Gene rev/metabolismo , HIV-1/genética , RNA Viral/metabolismo , Elementos de Resposta , Acridinas/química , Aminoglicosídeos , Animais , Antibacterianos/química , Sequência de Bases , Sítios de Ligação , Ligação Competitiva , Bovinos , DNA/metabolismo , Dimerização , Produtos do Gene rev/química , HIV-1/química , Ligantes , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Poli A-U/metabolismo , RNA de Transferência/metabolismo , RNA Viral/química , Espectrometria de Fluorescência/métodos , Especificidade por Substrato , Produtos do Gene rev do Vírus da Imunodeficiência Humana
11.
Biochemistry ; 38(47): 15564-72, 1999 Nov 23.
Artigo em Inglês | MEDLINE | ID: mdl-10569940

RESUMO

The 35000-Mr beta-adrenergic receptor mRNA binding protein (beta ARB) is induced by beta-adrenergic agonists and binds to G-protein-linked receptor mRNAs that exhibit agonist-induced destabilization. Recently, we identified a 20-nucleotide, AU-rich region in the 3'-untranslated region of the hamster beta 2-adrenergic receptor mRNA consisting of an AUUUUA hexamer flanked by U-rich regions, which constitutes the binding domain for beta ARB. U to G substitution in the hexamer region attenuates the binding of beta ARB, whereas U to G substitution of hexamer and flanking U-rich domains abolishes binding of beta ARB and stabilizes beta 2-adrenergic receptor mRNA levels in transfectant clones challenged with either isoproterenol or cyclic AMP. In the study presented here, we mutated the 20-nucleotide ARE region to establish the minimal AU-rich sequence required for beta ARB binding. U to G substitutions of flanking poly(U) regions and of the hexamer established the nature of the binding properties. Using various mutants, we demonstrated also that binding of beta ARB correlates with the extent of destabilization of beta 2-adrenergic receptor mRNA in response to agonist stimulation. High-affinity binding of hamster, rat, mouse, porcine, and human ARE sequences to beta ARB was revealed by SDS-polyacrylamide gel electrophoresis following UV-catalyzed cross-linking and by gel mobility shift assays. Further, beta ARB was shown to bind more avidly to the 20-nucleotide ARE region than to well-established mRNA destablization sequences of tandem repeats of five pentamers. Thus, for beta 2-adrenergic receptor, mRNA destabilization likely occurs via conserved AU-rich elements present in the 3'-untranslated regions of receptor mRNAs.


Assuntos
Regiões 3' não Traduzidas/metabolismo , Mutagênese Sítio-Dirigida , RNA Mensageiro/metabolismo , Receptores Adrenérgicos beta 2/genética , Homologia de Sequência do Ácido Nucleico , Adenina/metabolismo , Animais , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Linhagem Celular , Cricetinae , Humanos , Mesocricetus , Camundongos , Poli A-U/metabolismo , Proteínas de Ligação a RNA/genética , Proteínas de Ligação a RNA/metabolismo , Ratos , Receptores Adrenérgicos beta 2/metabolismo , Suínos , Uracila/metabolismo
12.
Eur J Biochem ; 265(2): 680-7, 1999 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-10504400

RESUMO

Lyophilization of bovine ribonuclease A (RNase A; Sigma, type XII-A) from 40% acetic acid solutions leads to the formation of approximately 14 aggregated species that can be separated by ion-exchange chromatography. Several aggregates were identified, including two variously deamidated dimeric subspecies, two distinct trimeric and two distinct tetrameric RNase A conformers, besides the two forms of dimer characterized previously [Gotte, G. & Libonati, M. (1998) Two different forms of aggregated dimers of ribonuclease A. Biochim. Biophys. Acta 1386, 106-112]. We also have possible evidence for the existence of two forms of pentameric RNase A. The two forms of trimers and tetramers are characterized by: (a) slightly different gel filtration patterns; (b) different retention times in ion-exchange chromatography; and (c) different mobilities in cathodic gel electrophoresis under nondenaturing conditions. Therefore, they appear to have distinct structural organizations responsible for a different availability of their positively charged amino acid residues. All RNase A oligomers, in particular the two distinct trimeric and tetrameric conformers, degrade poly(A).poly(U), viral double-stranded RNA and polyadenylate with a catalytic efficiency that is in general higher for the more basic species. On the contrary, the activity of the RNase A oligomers, from dimer to pentamer, on yeast RNA and poly(C) (Kunitz assay) is lower than that of monomeric RNase A.


Assuntos
Conformação Proteica , Ribonuclease Pancreático/química , Animais , Bovinos , Cromatografia em Gel , Cromatografia por Troca Iônica , Reagentes de Ligações Cruzadas , Dimetil Suberimidato , Eletroforese em Gel de Poliacrilamida , Peso Molecular , Pâncreas/enzimologia , Poli A-U/metabolismo , RNA de Cadeia Dupla/metabolismo
13.
Nucleic Acids Res ; 26(17): 4047-55, 1998 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-9705518

RESUMO

A new sequence-specific RNase was isolated from human colon carcinoma T84 cells. The enzyme was purified to electrophoretical homogeneity by pH precipitation, HiTrapSP and Superdex 200 FPLC. The molecular weight of the new enzyme, which we have named RNase T84, is 19 kDa. RNase T84 is an endonuclease which generates 5'-phosphate-terminated products. The new RNase selectively cleaved the phosphodiester bonds at AU or GU steps at the 3' side of A or G and the 5' side of U. 5'AU3' or 5'GU3' is the minimal sequence required for T84 RNase activity, but the rate of cleavage depends on the sequence and/or structure context. Synthetic ribohomopolymers such as poly(A), poly(G), poly(U) and poly(C) were very poorly hydrolysed by T84 enzyme. In contrast, poly(I) and heteroribopolymers poly(A,U) and poly(A,G,U) were good substrates for the new RNase. The activity towards poly(I) was stronger in two colon carcinoma cell lines than in three other epithelial cell lines. Our results show that RNase T84 is a new sequence-specific enzyme whose gene is abundantly expressed in human colon carcinoma cell lines.


Assuntos
Adenocarcinoma/enzimologia , Neoplasias do Colo/enzimologia , Endorribonucleases/metabolismo , Proteínas de Neoplasias/metabolismo , Sequência de Bases , Biomarcadores Tumorais , Endorribonucleases/isolamento & purificação , Humanos , Dados de Sequência Molecular , Proteínas de Neoplasias/isolamento & purificação , Conformação de Ácido Nucleico , Poli A-U/metabolismo , Poli I/metabolismo , Polirribonucleotídeos/metabolismo , RNA de Transferência de Ácido Aspártico/metabolismo , RNA de Transferência de Fenilalanina/metabolismo , Especificidade por Substrato , Células Tumorais Cultivadas/enzimologia
14.
Biochem J ; 318 ( Pt 1): 287-90, 1996 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-8761484

RESUMO

Stable bovine RNase A aggregates larger than dimers (identified as trimers, tetramers, pentamers and hexamers) were obtained by lyophilization of RNase A from 40-50% acetic acid solutions. The RNase activity of these aggregates was compared with that of monomeric RNase A on single- and double-stranded polyribonucleotides. Their activity toward poly(U) and yeast RNA slightly decreases as a function of the size of the aggregates. In contrast, their action on poly(A).poly(U) as substrate progressively increases from a relative activity of 1 for the RNase monomer to 10 for the hexamer. These results are discussed in the light of an already advanced hypothesis about a possible mechanism of RNase attack on double-stranded RNA.


Assuntos
RNA de Cadeia Dupla/metabolismo , Ribonuclease Pancreático/metabolismo , Animais , Biopolímeros/metabolismo , Bovinos , Cromatografia em Gel , Estabilidade Enzimática , Conformação de Ácido Nucleico , Pâncreas/enzimologia , Poli A-U/metabolismo , Poli U/metabolismo , Conformação Proteica , Ribonuclease Pancreático/química , Leveduras
15.
Nucleic Acids Symp Ser ; (33): 106-8, 1995.
Artigo em Inglês | MEDLINE | ID: mdl-8643340

RESUMO

The kinetics of single-stranded (SS) and double-stranded (ds) polyribonucleotides cleavage by three mammalian pancreatic type ribonucleases have been studied under low and high salt conditions. The values kcat, Km, and kcat/Km for depolymerization of poly(U), poly(A).poly(U), poly(I) and poly(I).poly(C) by bovine RNase A, bovine seminal RNase, and human seminal RNase have been determined and compared to each other. The Km values of bovine RNase A for (ss) or (ds) substrates were of the same order of magnitude under low and high ionic strength conditions, while their kcat values were found to differ considerably. Qualitatively similar results were obtained with bovine and human seminal RNases, i.e., the activity ratios (ssRNA/dsRNA) were mostly determined by the ratio of kcat values. It was shown that the modest levels of activity toward dsRNAs shown by single-strand-preferring RNases may occur by a mechanism consisting in the binding of the RNase to single nucleotides which are wound off the double helix because of thermal fluctuations. A higher activity and its enhancement as a function of number and location of the positive charges present on the RNase surface (human seminal RNase > bovine seminal RNase > bovine RNase A), as well as its increase under low ionic strength conditions, could instead be explained by the increased occurence of the splitting mechanism based on the binding of the RNase to single-stranded RNA sequences transiently exposed from the RNA double-helix.


Assuntos
RNA de Cadeia Dupla/metabolismo , Ribonucleases/metabolismo , Animais , Bovinos , Humanos , Técnicas In Vitro , Cinética , Masculino , Concentração Osmolar , Pâncreas/enzimologia , Poli A-U/metabolismo , Poli I/metabolismo , Poli I-C/metabolismo , Poli U/metabolismo , Ribonuclease Pancreático/metabolismo , Sêmen/enzimologia , Especificidade por Substrato
16.
Biochim Biophys Acta ; 1178(1): 103-10, 1993 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-8329455

RESUMO

Binding and internalization of the synthetic double-stranded complex poly(A).poly(U) were studied on a murine monocyte/macrophage cell line J774A1. Poly(A).poly(U) increased in a dose-dependent fashion the oligo-2',5'-adenylate synthetase demonstrating that those cells were responsive to this agonist. Binding of [32P]poly(A).[32P]poly(U) to the cells reached an apparent kinetic equilibrium within 4 h and was saturable (apparent Kd = 9.99 +/- 0.09.10(-2) g/l and Bmax 13.3 +/- 5.3.10(-3) g/l per 10(6) cells) and temperature-dependent. The binding of poly(A).poly(U) was competitively inhibited by various polynucleotides but not by other structurally unrelated compounds. Analysis of cell-associated [32P]poly(A).[32P]poly(U) demonstrated a minimal degradation of this polyribonucleotide over a 4-h incubation period. Autoradiography of cells incubated with [3H]poly(A).[3H]poly(U) revealed that poly(A).poly(U) was internalized and migrated to cell nuclei. These results suggest that poly(A).poly(U) is internalized in J774A1 cells via an endocytotic process.


Assuntos
2',5'-Oligoadenilato Sintetase/biossíntese , Macrófagos/efeitos dos fármacos , Poli A-U/farmacologia , Animais , Linhagem Celular , Núcleo Celular/metabolismo , Indução Enzimática , Ativação de Macrófagos , Macrófagos/enzimologia , Camundongos , Poli A-U/metabolismo , Ligação Proteica , Trítio
17.
Acta Virol ; 36(4): 347-58, 1992 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-1282777

RESUMO

PR-RK, a cell line derived from rabbit kidney cells (RK-13), was insensitive to the cytotoxic effect and interferon (IFN) inducing activity of the copolymer of riboinosinic and ribocytidylic acid (poly rI:rC). However, PR-RK was sensitive to the cytotoxic effect of the copolymer of riboadenylic and ribouridylic acid (poly rA:rU). Comparison of PR-RK cells and RK-13 cells by cytofluorometric analysis revealed that the binding of poly rI:rC was considerably reduced on PR-RK cells. These results suggested that the receptor for poly rI:rC might be different from the receptor for poly rA:rU, and this difference could provide a basis for the identification of the dsRNA receptor on cell surface. Western blot analysis of the components of cell membrane fraction prepared from RK-13 cells was performed by using a monoclonal antibody, which binds to cell membrane of RK-13 cells but not to PR-RK cells, and which blocks IFN induction by poly rI:rC in RK-13 cells. The 60K protein was identified as one of the poly rI:rC receptor protein.


Assuntos
Poli I-C/metabolismo , Receptores de Superfície Celular , Receptores Imunológicos/metabolismo , Animais , Sítios de Ligação , Morte Celular/efeitos dos fármacos , Linhagem Celular , Membrana Celular/metabolismo , Interferons/biossíntese , Poli A-U/metabolismo , Poli A-U/farmacologia , Poli I-C/farmacologia , RNA de Cadeia Dupla/metabolismo , Coelhos
18.
J Biol Chem ; 267(6): 3750-7, 1992 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-1740426

RESUMO

We have used synthetic peptides to study a conserved RNA binding motif in yeast poly(A)-binding protein. Two peptides, 45 and 44 amino acids in length, corresponding to amino and carboxyl halves of a 90-amino acid RNA-binding domain in the protein were synthesized. While the amino-terminal peptide had no significant affinity for nucleic acids, the carboxyl-terminal peptide-bound nucleic acids with similar characteristics to that for the entire 577 residue yeast poly(A)-binding protein. In 100 mM NaCl, the latter peptide retained over 50% of the intrinsic binding free energy of the protein, as well as, similar RNA versus DNA binding specificity. However, shuffling of the sequence of this 44 residue peptide had surprisingly little effect on its nucleic acid binding properties suggesting the overriding importance of amino acid composition as opposed to primary sequence. Deletion studies on the 44 residue peptide with the "correct" sequence succeeded in identifying amino acids important for conferring RNA specificity and for increasing our understanding of the molecular basis for nucleic acid binding by synthetic peptides. The shuffled peptide study, however, clearly indicates that considerable caution must be exercised before extrapolating results of structure/function studies on synthetic peptide analogues to the parent protein.


Assuntos
Proteínas de Transporte/metabolismo , RNA Fúngico/metabolismo , Proteínas de Ligação a RNA/metabolismo , Saccharomyces cerevisiae/genética , Sequência de Aminoácidos , Sítios de Ligação , Dicroísmo Circular , Proteínas Fúngicas/metabolismo , Genes Fúngicos , Temperatura Alta , Dados de Sequência Molecular , Desnaturação de Ácido Nucleico , Ácidos Nucleicos/metabolismo , Fragmentos de Peptídeos/metabolismo , Poli A/metabolismo , Poli A-U/metabolismo , Proteínas de Ligação a Poli(A) , Espectrometria de Fluorescência , Especificidade por Substrato
19.
Exp Hematol ; 19(4): 261-6, 1991 May.
Artigo em Inglês | MEDLINE | ID: mdl-2055290

RESUMO

The immunostimulant poly(A)-poly(U) induces a rapid enhancement of circulating colony-stimulating activity (CSA) in normal mice, culminating 2 h after i.v. injection. A dose of 200 micrograms per mouse is sufficient for a maximal effect. The colonies formed in response to sera from poly(A)-poly(U)-injected mice are mainly granulocytic with few macrophages. These sera are devoid of detectable interleukin 3 (IL-3) or granulocyte-macrophage colony-stimulating factor (GM-CSF), but contain large amounts of interleukin 6 (IL-6) that are perfectly correlated with circulating CSA levels. Although, in our hands, IL-6 alone induces no colony formation in the standard methylcellulose colony assay, it is nevertheless requisite for this biological activity because 1) monoclonal antibodies against IL-6 strongly diminish colony formation in response to sera from poly(A)-poly(U)-injected mice, and 2) recombinant (r)IL-6 induces colonies when tested in combination with low amounts of normal murine serum. At the concentrations used (0.3%-2.5%), the latter has no or a very slight effect alone. Low amounts of hematopoietic growth factors, that is, macrophage colony-stimulating factor (M-CSF), granulocyte colony-stimulating factor (G-CSF), GM-CSF, or IL-3 that are almost ineffective in the absence of IL-6 can replace normal serum. Taken together, these data suggest that circulating IL-6, induced by i.v. injection of poly(A)-poly(U), promotes colony formation by interacting with serum components that might be identical with hematopoietic growth factors present in normal serum at subliminal concentrations. Finally, the involvement of lipopolysaccharide (LPS) in this phenomenon has been ruled out by the use of the low responder strain of mice (C3H/HeJ) that leads to similar results.


Assuntos
Fatores de Crescimento de Células Hematopoéticas/metabolismo , Interleucina-6/metabolismo , Poli A-U/farmacologia , Animais , Anticorpos/farmacologia , Interações Medicamentosas , Interleucina-6/sangue , Interleucina-6/imunologia , Camundongos , Camundongos Endogâmicos C57BL , Poli A-U/metabolismo
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