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1.
Biotechnol Appl Biochem ; 71(1): 213-222, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37904319

RESUMO

Neurokinin/tachykinin receptors are classified as the G-protein coupled receptor superfamily. The neurokinin 2 receptor (NK2R) is widely expressed in different tissues. NK2R is associated with a range of biological events, such as inflammation, smooth muscle contraction, intestinal motor functions, and asthma. Despite these diverse activities, no approved drugs targeting NK2R have been developed yet. Our study focuses on finding potential inhibitors for NK2R using virtual screening, molecular docking, and ADME (absorption, distribution, metabolism, and excretion) approaches. We used a homology modeling approach and AlphaFold DB to obtain the three-dimensional structure of mouse and human NK2R proteins, respectively. The homology model of NK2R was predicted using MODELLER v10.3 and further refined and validated using the 3Drefine tool and RAMPAGE server, respectively. Molecular docking was performed using a library of 910 structurally similar molecules to four NK1R antagonists: aprepitant, casopitant, fosaprepitant, and rolapitant. Molecular docking revealed six small molecules that displayed high Chemscore fitness scores, and binding energies with desirable ligand-NK2R interactions. The evaluation of the in silico ADME profile, solubility, and permeability of the ligand molecules has revealed that the small molecules are potentially nontoxic and have the chance of exhibiting biological activity after oral administration. Further experimental studies (in vitro and in vivo assays) are required to evaluate the effectiveness of these inhibitors as therapeutic targets.


Assuntos
Asma , Receptores da Neurocinina-2 , Humanos , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/metabolismo , Simulação de Acoplamento Molecular , Ligantes , Simulação de Dinâmica Molecular
2.
Protein Eng Des Sel ; 32(10): 459-469, 2019 12 31.
Artigo em Inglês | MEDLINE | ID: mdl-32400863

RESUMO

The tachykinin 2 receptor (NK2R) plays critical roles in gastrointestinal, respiratory and mental disorders and is a well-recognized target for therapeutic intervention. To date, therapeutics targeting NK2R have failed to meet regulatory agency approval due in large part to the limited characterization of the receptor-ligand interaction and downstream signaling. Herein, we report a protein engineering strategy to improve ligand-binding- and signaling-competent human NK2R that enables a yeast-based NK2R signaling platform by creating chimeras utilizing sequences from rat NK2R. We demonstrate that NK2R chimeras incorporating the rat NK2R C-terminus exhibited improved ligand-binding yields and downstream signaling in engineered yeast strains and mammalian cells, where observed yields were better than 4-fold over wild type. This work builds on our previous studies that suggest exchanging the C-termini of related and well-expressed family members may be a general protein engineering strategy to overcome limitations to ligand-binding and signaling-competent G protein-coupled receptor yields in yeast. We expect these efforts to result in NK2R drug candidates with better characterized signaling properties.


Assuntos
Proteínas de Ligação ao GTP/metabolismo , Engenharia de Proteínas , Receptores da Neurocinina-2/metabolismo , Proteínas Recombinantes de Fusão/metabolismo , Saccharomyces cerevisiae/genética , Transdução de Sinais , Animais , Células HEK293 , Humanos , Ligantes , Ratos , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/genética , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética
3.
PLoS One ; 13(10): e0205894, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30359406

RESUMO

A series of peptide NK2 receptor agonists was evaluated for affinity, potency, efficacy, and selectivity at human recombinant NK2 and NK1 receptors expressed in CHO cells to identify compounds with the greatest separation between NK2 and NK1 receptor agonist activity. Binding studies were performed using displacement of [125I]-NKA binding to NK2 receptors and displacement of [3H]-Septide binding to NK1 receptors expressed in CHO cells. Functional studies examining the increase in intracellular calcium levels and cyclic AMP stimulation were performed using the same cell lines. A correlation was demonstrated between binding affinities (Ki) and potency to increase intracellular calcium (EC50) for NK2 and NK1 receptors. Ranking compounds by their relative affinity (Ki) or potency (EC50) at NK2 or NK1 receptors indicated that the most selective NK2 agonists tested were [Lys5,MeLeu9,Nle10]-NKA(4-10) (NK1/NK2 Ki ratio = 674; NK1/NK2 EC50 ratio = 105) and [Arg5,MeLeu9,Nle10]-NKA(4-10) (NK1/NK2 Ki ratio = 561; NK1/NK2 EC50 ratio = 70). The endogenous peptide, NKA, lacked selectivity with an NK1/NK2 Ki ratio = 20 and NK1/NK2 EC50 ratio = 1. Of the compounds selected for evaluation in cyclic AMP stimulation assays, [ß-Ala8]-NKA(4-10) had the greatest selectivity for activation of NK2 over NK1 receptors (NK1/NK2 EC50 ratio = 244), followed by [Lys5,MeLeu9,Nle10]-NKA(4-10) (ratio = 74), and NKA exhibited marginal selectivity (ratio = 2.8).


Assuntos
Neurocinina A/análogos & derivados , Neurocinina A/química , Receptores da Neurocinina-1/química , Receptores da Neurocinina-2/química , Proteínas Recombinantes/química , Animais , Células CHO , Cálcio/metabolismo , Membrana Celular/metabolismo , Cricetinae , Cricetulus , AMP Cíclico/metabolismo , Relação Dose-Resposta a Droga , Avaliação Pré-Clínica de Medicamentos , Humanos , Peptídeos/química , Reprodutibilidade dos Testes
4.
J Med Chem ; 52(19): 5999-6011, 2009 Oct 08.
Artigo em Inglês | MEDLINE | ID: mdl-19746979

RESUMO

The neurokinin NK2 receptor is known to pre-exist in equilibrium between at least three states: resting-inactive, calcium-triggering, and cAMP-producing. Its endogeneous ligand, NKA, mainly induces the calcium response. Using a FRET-based assay, we have previously discovered an allosteric modulator of the NK2 receptor that has the unique ability to discriminate among the two signaling pathways: calcium-signaling is not affected while cAMP signaling is significantly decreased. A series of compounds have been prepared and studied in order to better understand the structural determinants of this allosteric functional switch of a GPCR. Most of them display the same allosteric profile, with smooth pharmacomodulation. One compound however exhibits significantly improved modulatory properties of NKA induced signaling when compared to the original modulator.


Assuntos
Regulação Alostérica , Neurocinina A/química , Receptores da Neurocinina-2/efeitos dos fármacos , Transdução de Sinais/efeitos dos fármacos , Animais , Sinalização do Cálcio , AMP Cíclico , Transferência Ressonante de Energia de Fluorescência , Humanos , Hidrocarbonetos Aromáticos/química , Hidrocarbonetos Aromáticos/farmacologia , Ligantes , Neurocinina A/metabolismo , Conformação Proteica/efeitos dos fármacos , Receptores Acoplados a Proteínas G , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/metabolismo
5.
J Chem Inf Model ; 49(7): 1734-40, 2009 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-19534508

RESUMO

The neurokinin-2 receptor is a member of the rhodopsin family of G-protein coupled receptors, which represents one of the most relevant target families in small-molecule drug design. NK-2 receptors have been implicated in playing a pathophysiological role in asthma. Activation of the NK-2 receptor by its endogenous peptide agonist, tachykinins, is associated with diverse biological responses like bronchoconstriction, vasodepression, and regulation of endocrine functions. Agonist binding to the receptor is a crucial event in initiating signaling, and therefore characterization of the structural features of the agonists can reveal the molecular basis of receptor activation and help in rational design of novel therapeutics. In this study a molecular model for the interaction of the primary ligand NKA with its G-protein coupled receptor neurokinin-2 receptor has been developed. A three-dimensional model for the NK-2 receptor has been generated by homology modeling using rhodopsin as a template. A knowledge based docking of the NMR derived bioactive conformation of NKA to the receptor has been performed utilizing the ligand binding data obtained from the photoaffinity labeling and site-directed mutagenesis studies. The molecular model for the NKA/NK-2 receptor complex thus obtained sheds light on the topographical features of the binding pocket of the receptor and provides atomic insight into the biochemical data currently available for the receptor. The results of the receptor modeling studies have been used to discuss the molecular determinants for NK-2 receptor selectivity.


Assuntos
Neurocinina A/metabolismo , Receptores da Neurocinina-2/agonistas , Receptores da Neurocinina-2/metabolismo , Sequência de Aminoácidos , Animais , Sítios de Ligação , Bovinos , Humanos , Ligação de Hidrogênio , Modelos Moleculares , Neurocinina A/química , Ligação Proteica , Conformação Proteica , Receptores da Neurocinina-2/química , Rodopsina/química
6.
Biochem Pharmacol ; 77(9): 1522-30, 2009 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-19426690

RESUMO

Tachykinin NK receptors (NKRs) differ to a large degree among species with respect to their affinities for small molecule antagonists. The aims of the present study were to clone NKRs from gerbil (NK2R and NK3R) and dog (NK1R, NK2R and NK3R) in which the sequence was previously unknown and to investigate the potency of several NKR antagonists at all known human, dog, gerbil and rat NKRs. The NKR protein coding sequences were cloned and expressed in CHO cells. The inhibitory concentrations of selective and non-selective NKR antagonists were determined by inhibition of agonist-induced mobilization of intracellular Ca2+. Receptor homology models were constructed based on the rhodopsin crystal structure to investigate and identify the antagonist binding sites and interaction points in the transmembrane (TM) regions of the NKRs. Data collected using the cloned dog NK1R confirmed that the dog NK1R displays similar pharmacology as the human and the gerbil NK1R, but differs greatly from the mouse and the rat NK1R. Despite species-related amino acid (AA) differences located close to the antagonist binding pocket of the NK2R, they did not affect the potency of the antagonists ZD6021 and saredutant. Two AA differences located close to the antagonist binding site of NK3R likely influence the NK3R antagonist potency, explaining the 3-10-fold decrease in potency observed for the rat NK3R. For the first time, detailed pharmacological experiments in vitro with cloned NKRs demonstrate that not only human, but also dog and gerbil NKR displays similar antagonist pharmacology while rat diverges significantly with respect to NK1R and NK3R.


Assuntos
Morfolinas/farmacologia , Antagonistas dos Receptores de Neurocinina-1 , Receptores da Neurocinina-2/antagonistas & inibidores , Receptores da Neurocinina-3/antagonistas & inibidores , Sequência de Aminoácidos , Animais , Aprepitanto , Sequência de Bases , Células CHO , Cálcio/metabolismo , Cricetinae , Cricetulus , Cães , Gerbillinae , Cobaias , Humanos , Camundongos , Dados de Sequência Molecular , Ratos , Receptores da Neurocinina-1/química , Receptores da Neurocinina-2/química , Receptores da Neurocinina-3/química , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Especificidade da Espécie , Transfecção
7.
J Pharmacol Exp Ther ; 329(2): 486-95, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19218528

RESUMO

Ibodutant (MEN15596, [1-(2-phenyl-1R-[[1-(tetrahydropyran-4-ylmethyl)-piperidin-4-ylmethyl]-carbamoyl]-ethylcarbamoyl)-cyclopentyl]-amide) is a tachykinin NK(2) receptor (NK(2)R) antagonist currently under phase II clinical trials for irritable bowel syndrome. This study focuses on the ibodutant pharmacodynamic profile at the human NK(2)R and compares it with two other antagonists, nepadutant (MEN11420, (cyclo-[[Asn(beta-D-GlcNAc)-Asp-Trp-Phe-Dpr-Leu]cyclo(2beta-5beta)]) and saredutant [SR48968, (S)-N-methyl-N[4-(4-acetylamino-4-phenylpiperidino)-2-(3,4-dichlorophenyl)butyl]benzamide]. In functional experiments (phosphatidylinositol accumulation) in Chinese hamster ovary cells expressing the human NK(2)R, ibodutant potency measured toward concentration-response curves to neurokinin A as pK(B) was 10.6, and its antagonism mechanism was surmountable and competitive. In the same assay, antagonism equilibration and reversibility experiments of receptor blockade indicated that ibodutant quickly attains equilibrium and that reverts from receptor compartment in a slower manner. Kinetic properties of ibodutant were assessed through competitive binding kinetics experiments performed at [(3)H]nepadutant and [(3)H]saredutant binding sites. Determined K(on) and K(off) values indicated a fast association and slow dissociation rate of ibodutant at the different antagonist binding sites. Last, by radioligand binding experiments at some mutated human tachykinin NK(2)Rs, the amino acidic determinants crucial for the high affinity of ibodutant were identified at the transmembrane (TM) level: Cys167 in TM4; Ile202 and Tyr206 in TM5; Phe270, Tyr266, and Trp263 in TM6; and Tyr289 in TM7. These results indicated an extended antagonist binding pocket in the TM portion of the receptor, which is conceived crucial for TM3 and 6 arrangement and leads to G protein-coupled receptor activation. By combining this information and molecular modeling, the docking mode of ibodutant-human NK(2)R complex is proposed.


Assuntos
Dipeptídeos/farmacologia , Receptores da Neurocinina-2/antagonistas & inibidores , Tiofenos/farmacologia , Animais , Benzamidas/farmacologia , Ligação Competitiva , Linhagem Celular , Clonagem Molecular , Cricetinae , Cricetulus , Relação Dose-Resposta a Droga , Humanos , Cinética , Modelos Moleculares , Peptídeos Cíclicos/farmacologia , Fosfatidilinositóis/metabolismo , Piperidinas/farmacologia , Ligação Proteica , Ensaio Radioligante , Receptores da Neurocinina-2/biossíntese , Receptores da Neurocinina-2/química , Fosfolipases Tipo C/metabolismo
8.
J Neurochem ; 101(2): 506-16, 2007 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-17402972

RESUMO

Neurokinin A stimulates physiological responses in the peripheral and central nervous systems upon interacting primarily with the tachykinin NK2 receptor (NK2R). In this study, the structure of NKA bound to the NK2R is characterised by use of fluorescence resonance energy transfer. Four fluorescent NKA analogues with Texas red introduced at amino acid positions 1, 4, 7 and 10 were prepared. When bound to a NK2R carrying enhanced green fluorescent protein at the N-terminus, all peptides reduce green fluorescent protein fluorescence from 10% to 50% due to energy transfer. The derived donor-acceptor distances are 46, 55, 59 and 69 A for the fluorophore linked to positions 1-10, respectively. The monotonic increase in distance clearly indicates that the peptide adopts an extended structure when bound to its receptor. The present data are used, in combination with rhodopsin structure, fluorescence studies, photoaffinity labelling and site-directed mutagenesis data to design a computer model of the NKA-NK2R complex. We propose that the N-terminus of NKA is exposed and accessible to the extracellular medium. Subsequent amino acids of the NKA peptide become progressively more buried residues up to approximately one-third of the transmembrane-spanning domain.


Assuntos
Membrana Celular/metabolismo , Sistema Nervoso/metabolismo , Neurocinina A/metabolismo , Neurônios/metabolismo , Receptores da Neurocinina-2/metabolismo , Sítios de Ligação/fisiologia , Ligação Competitiva/fisiologia , Linhagem Celular , Membrana Celular/ultraestrutura , Transferência Ressonante de Energia de Fluorescência , Proteínas de Fluorescência Verde/metabolismo , Humanos , Substâncias Macromoleculares/química , Substâncias Macromoleculares/metabolismo , Modelos Moleculares , Estrutura Molecular , Neurocinina A/análogos & derivados , Neurocinina A/química , Neurônios/ultraestrutura , Peptídeos/química , Peptídeos/metabolismo , Estrutura Terciária de Proteína/fisiologia , Receptores da Neurocinina-2/agonistas , Receptores da Neurocinina-2/química , Xantenos
9.
FASEB J ; 21(9): 2124-34, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17371796

RESUMO

The orthosteric agonist neurokinin A (NKA) interacts with the tachykinin NK2 receptors (NK2Rs) via an apparent sequential binding process, which stabilizes the receptor in at least two different active conformations (A1L and A2L). The A1L conformation exhibits fast NKA dissociation kinetics and triggers intracellular calcium elevation; the A2L conformation exhibits slow NKA dissociation kinetics and triggers cAMP production. The new compound LPI805 is a partial and noncompetitive inhibitor of NKA binding to NK2Rs. Analysis of NKA dissociation in the presence of LPI805 suggests that LPI805 decreases the number of NKA-NK2R complexes in A2L conformation while increasing those in the A1L conformation. Analysis of signaling pathways of NK2Rs shows that LPI805 dramatically inhibits the NKA-induced cAMP response while slightly enhancing the NKA-induced calcium response. Analysis of NKA association kinetics reveals that LPI805 promotes strong and specific destabilization of the NKA-NK2R complexes in the A2L conformation whereas access of NKA to the A1L conformations is unchanged. Thus, to our knowledge, LPI805 is the first example of a conformation-specific allosteric antagonist of a G-protein-coupled receptor. This work establishes the use of allosteric modulators in order to promote functional selectivity on certain agonist-receptor interactions.


Assuntos
Aminoacetonitrila/análogos & derivados , Naftalenos/farmacologia , Receptores da Neurocinina-2/antagonistas & inibidores , Regulação Alostérica , Aminoacetonitrila/síntese química , Aminoacetonitrila/farmacologia , Animais , Cálcio/metabolismo , Sinalização do Cálcio/efeitos dos fármacos , Linhagem Celular/efeitos dos fármacos , AMP Cíclico/biossíntese , Proteínas Quinases Dependentes de AMP Cíclico/metabolismo , Transferência Ressonante de Energia de Fluorescência , Corantes Fluorescentes/análise , Genes Reporter , Humanos , Rim , Cinética , Naftalenos/síntese química , Neurocinina A/análogos & derivados , Neurocinina A/análise , Ligação Proteica , Conformação Proteica/efeitos dos fármacos , Ratos , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/genética , Proteínas Recombinantes de Fusão/antagonistas & inibidores , Sistemas do Segundo Mensageiro/efeitos dos fármacos , Relação Estrutura-Atividade , Especificidade por Substrato
10.
J Med Chem ; 48(18): 5655-8, 2005 Sep 08.
Artigo em Inglês | MEDLINE | ID: mdl-16134933

RESUMO

The de novo molecular design program SPROUT has been used in conjunction with a molecular model to produce a molecular template for a new class of NK(2) receptor antagonist. An efficient, stereocontrolled synthesis of a small series of molecules, designed to test the validity of this template, was developed. Competition assays using recombinant human NK(2) receptor support the structural requirements of this new designed molecular template.


Assuntos
Dioxolanos/síntese química , Furanos/síntese química , Receptores da Neurocinina-2/antagonistas & inibidores , Receptores da Neurocinina-2/química , Sítios de Ligação , Dioxolanos/química , Desenho de Fármacos , Furanos/química , Humanos , Modelos Moleculares , Software , Estereoisomerismo
11.
J Biol Chem ; 279(43): 45057-67, 2004 Oct 22.
Artigo em Inglês | MEDLINE | ID: mdl-15294896

RESUMO

A functional fluorescent neurokinin NK2 receptor, EGFP-NK2, was previously used to follow, by fluorescence resonance energy transfer measurements in living cells, the binding of its fluorescently labeled agonist, bodipy-neurokinin A (NKA). Local agonist application suggested that the activation and desensitization of the NK2 receptors were compartmentalized at the level of the plasma membrane. In this study, fluorescence recovery after photobleaching experiments are carried out at variable observation radius (vrFRAP) to probe EGFP-NK2 receptor mobility and confinement. Experiments are carried out at 20 degrees C to maintain the number of receptors constant at the cell surface during recordings. In the absence of agonist, 35% EGFP-NK2 receptors diffuse within domains of 420 +/- 80 nm in radius with the remaining 65% of receptors able to diffuse with a long range lateral diffusion coefficient between the domains. When cells are incubated with a saturating concentration of NKA, 30% EGFP-NK2 receptors become immobilized in small domains characterized by a radius equal to 170 +/- 50 nm. Biochemical experiments show that the confinement of EGFP-NK2 receptor is not due to its association with rafts at any given time. Colocalization of the receptor with beta-arrestin and transferrin supports that the small domains, containing 30% of activated EGFP-NK2, correspond to clathrin-coated pre-pits. The similar amount of confined EGFP-NK2 receptors found before and after activation (30-35%) is discussed in term of putative transient interactions of the receptors with preexisting scaffolds of signaling molecules.


Assuntos
Membrana Celular/metabolismo , Receptores da Neurocinina-2/química , Arrestinas/metabolismo , Compostos de Boro/farmacologia , Linhagem Celular , Clatrina/química , Difusão , Relação Dose-Resposta a Droga , Recuperação de Fluorescência Após Fotodegradação , Corantes Fluorescentes/farmacologia , Vetores Genéticos , Proteínas de Fluorescência Verde/química , Proteínas de Fluorescência Verde/metabolismo , Humanos , Immunoblotting , Lipídeos/química , Microscopia Confocal , Microscopia de Fluorescência , Modelos Químicos , Neurocinina A/química , Octoxinol/farmacologia , Estrutura Terciária de Proteína , Receptores da Neurocinina-2/metabolismo , Temperatura , Fatores de Tempo , Transfecção , Transferrina/metabolismo , Xantenos/farmacologia , beta-Arrestinas
12.
Biochemistry ; 43(11): 3027-38, 2004 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-15023054

RESUMO

Neurokinin-2 receptor (NK(2)R) binding of [(3)H]-SR48968, a piperidinyl antagonist, is inhibited by methanethiosulfonate ethylammonium (MTSEA) in a time- and concentration-dependent manner. By the systematic alanine replacement of putative loop and transmembrane region cysteine residues (Cys(4), Cys(81), Cys(167), Cys(262), Cys(281), Cys(308), and Cys(309)), we have determined that MTSEA perturbs [(3)H]-SR48968 binding by modifying Cys(167) in transmembrane helix 4. Data were substantiated using glycine, serine, and threonine substitutions of Cys(167). MTSEA preferentially modifies cysteine residues that are in proximity to a negatively charged environment. Hence, aspartate and glutamate residues were systematically substituted with leucine or valine, respectively, and the inhibitory effects of MTSEA on [(3)H]-SR48968 binding were reevaluated to determine those acidic residues close to the MTSEA binding crevice. Most significantly, substitution of Asp(5) in the receptor's extreme N-terminus abolished the effects of MTSEA on [(3)H]-SR48968 binding. Therefore, our data would suggest close association of the extreme N-terminus with the extracellular surfaces of helices 4 and 3 in the NK(2)R in forming a binding crevice for MTSEA. The inhibition of SR48968 binding appears to result from loss of the SR48968 binding conformation of Gln(166) induced by MTSEA when it is coupled to Cys(167). Hence, it is proposed that there is mutually exclusive hydrogen bonding of SR48968 and MTSEA to Gln(166).


Assuntos
Cisteína/química , Metanossulfonato de Etila/análogos & derivados , Espaço Extracelular/química , Fragmentos de Peptídeos/química , Receptores da Neurocinina-2/química , Sequência de Aminoácidos , Animais , Ácido Aspártico/genética , Benzamidas/antagonistas & inibidores , Benzamidas/química , Sítios de Ligação/efeitos dos fármacos , Ligação Competitiva , Células CHO , Cricetinae , Cisteína/genética , Metanossulfonato de Etila/química , Ácido Glutâmico/genética , Humanos , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Fragmentos de Peptídeos/genética , Piperidinas/antagonistas & inibidores , Piperidinas/química , Estrutura Secundária de Proteína , Receptores da Neurocinina-2/antagonistas & inibidores , Receptores da Neurocinina-2/genética , Eletricidade Estática , Reagentes de Sulfidrila/química , Trítio
13.
Curr Top Med Chem ; 4(1): 75-103, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-14754378

RESUMO

Extensive efforts since 1931, on the structural determination of the mammalian tachykinin SP by NMR, CD and IR have turned out to be inconclusive. Studies are now being concentrated on the structural properties and characteristics of various NK receptors (NK(1), NK(2) and NK(3)) with the help of genetics, cloning, receptor engineering, mutagenesis and modeling. This knowledge is now being fruitfully used in the development of non-peptide NK(1) receptor antagonists that essentially block the pharmacological effects of SP. It is now being realized that the simultaneous blockade of two or more receptors gives promising results in emesis, depression and pulmonary obstructive diseases. In addition to the synthetic compounds, the discovery of antagonists from natural origin has added a great value to this field. In this review we have made an attempt to present the structural characteristics of SP, its analogs and antagonists, the structural characteristics of the NK receptor, and structure activity relationships that have helped to improve the therapeutic utilities of SP antagonists.


Assuntos
Receptores da Neurocinina-1/fisiologia , Substância P/fisiologia , Sequência de Aminoácidos , Animais , Humanos , Dados de Sequência Molecular , Estrutura Molecular , Antagonistas dos Receptores de Neurocinina-1 , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/metabolismo , Fragmentos de Peptídeos/farmacologia , Estrutura Secundária de Proteína , Receptores da Neurocinina-1/química , Receptores da Neurocinina-2/antagonistas & inibidores , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/metabolismo , Relação Estrutura-Atividade , Substância P/análogos & derivados , Substância P/antagonistas & inibidores , Substância P/uso terapêutico
14.
Biophys J ; 85(6): 4002-11, 2003 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-14645089

RESUMO

The solution structure of NKA, a decapeptide of mammalian origin, has been characterized by CD spectropolarimetry and 2D proton nuclear magnetic resonance (2D 1H-NMR) spectroscopy in both aqueous and membrane mimetic solvents. Unambiguous NMR assignments of protons have been made with the aid of correlation spectroscopy (DQF-COSY and TOCSY) experiments and nuclear Overhauser effect spectroscopy (NOESY and ROESY) experiments. The distance constraints obtained from the NMR data have been utilized to generate a family of structures, which have been refined using restrained energy minimization and dynamics. These data show that in water NKA prefers to be in an extended chain conformation whereas a helical conformation is induced in the central core and the C-terminal region (D4-M10) of the peptide in the presence of perdeuterated dodecylphosphocholine (DPC) micelles, a membrane model system. Though less defined the N-terminus also displays some degree of order and a possible turn structure. The conformation adopted by NKA in the presence of DPC micelles represents a structural motif typical of neurokinin-2 selective agonists and is similar to that reported for eledoisin in hydrophobic environment.


Assuntos
Micelas , Neurocinina A/química , Fosforilcolina/análogos & derivados , Taquicininas/química , Algoritmos , Membrana Celular/metabolismo , Dicroísmo Circular , Metabolismo dos Lipídeos , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Neurocinina A/metabolismo , Fosforilcolina/química , Ligação Proteica , Conformação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Prótons , Receptores da Neurocinina-2/química
15.
J Neuroimmunol ; 138(1-2): 65-75, 2003 May.
Artigo em Inglês | MEDLINE | ID: mdl-12742655

RESUMO

Neurokinin (NK)-1 and NK-2 receptors regulate hematopoiesis by interacting with neurotransmitters that belong to the tachykinin. This report studies the relationship between NK-1 and NK-2 in primary human bone marrow (BM) stroma, which supports hematopoiesis. Use of NK receptor antagonists and deficient stromal cells indicate that the neurotransmitter, substance P (SP), could exert dual hematopoietic effects (inhibitory or stimulatory), depending on the interacting receptor and crosstalk between NK-1 and NK-2. Cloning and identification of the minimal promoter for NK-2 and comparison with NK-1 promoter showed that the hematopoietic functions of NK receptors involve receptor crosstalk and the particular cytokine (IL-3, GM-CSF, TGF-beta or IL-1alpha). Crosstalk between NK-1 and NK-2 adds to communication within neural-hematopoietic axis.


Assuntos
Hematopoese/fisiologia , Regiões Promotoras Genéticas , Receptor Cross-Talk/fisiologia , Receptores da Neurocinina-1/fisiologia , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/fisiologia , Regiões 5' não Traduzidas/efeitos dos fármacos , Sequência de Bases , Células da Medula Óssea/citologia , Células da Medula Óssea/efeitos dos fármacos , Células da Medula Óssea/metabolismo , Divisão Celular/fisiologia , Células Cultivadas , Clonagem Molecular/métodos , Citocinas/farmacologia , Regulação para Baixo/efeitos dos fármacos , Deleção de Genes , Hematopoese/genética , Células-Tronco Hematopoéticas/citologia , Células-Tronco Hematopoéticas/efeitos dos fármacos , Células-Tronco Hematopoéticas/metabolismo , Humanos , Dados de Sequência Molecular , Antagonistas dos Receptores de Neurocinina-1 , Regiões Promotoras Genéticas/efeitos dos fármacos , Regiões Promotoras Genéticas/genética , RNA Mensageiro/metabolismo , Receptores da Neurocinina-1/genética , Receptores da Neurocinina-2/antagonistas & inibidores , Receptores da Neurocinina-2/genética , Células Estromais/efeitos dos fármacos , Células Estromais/metabolismo , Substância P/farmacologia , Transfecção , Regulação para Cima/efeitos dos fármacos
16.
J Comput Aided Mol Des ; 17(11): 765-83, 2003 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-15072436

RESUMO

Three neurokinin (NK) antagonist pharmacophore models (Models 1-3) accounting for hydrogen bonding groups in the 'head' and 'tail' of NK receptor ligands have been developed by use of a new procedure for treatment of hydrogen bonds during superimposition. Instead of modelling the hydrogen bond acceptor vector in the strict direction of the lone pair, an angle is allowed between the hydrogen bond acceptor direction and the ideal lone pair direction. This approach adds flexibility to hydrogen bond directions and produces more realistic RMS values. By using this approach, two novel pharmacophore models were derived (Models 2 and 3) and a hydrogen bond acceptor was added to a previously published NK2 pharmacophore model [Poulsen et al., J. Comput.-Aided Mol. Design, 16 (2002) 273] (Model 1). Model 2 as well as Model 3 are described by seven pharmacophore elements: three hydrophobic groups, three hydrogen bond acceptors and a hydrogen bond donor. Model 1 contains the same hydrophobic groups and hydrogen bond donor as Models 2 and 3, but only one hydrogen bond acceptor. The hydrogen bond acceptors and donor are represented as vectors. Two of the hydrophobic groups are always aromatic rings whereas the other hydrophobic group can be either aromatic or aliphatic. In Model 1 the antagonists bind in an extended conformation with two aromatic rings in a parallel displaced and tilted conformation. Model 2 has the same two aromatic rings in a parallel displaced conformation whereas Model 3 has the rings in an edge to face conformation. The pharmacophore models were evaluated using both a structure (NK receptor homology models) and a ligand based approach. By use of exhaustive conformational analysis (MMFFs force field and the GB/SA hydration model) and least-squares molecular superimposition studies, 21 non-peptide antagonists from several structurally diverse classes were fitted to the pharmacophore models. More antagonists could be fitted to Model 2 with a low RMS and a low conformational energy penalty than to Models 1 and 3. Pharmacophore Model 2 was also able to explain the NK1, NK2 and NK3 subtype selectivity of the compounds fitted to the model. Three NK 7TM receptor models were constructed, one for each receptor subtype. The location of the antagonist binding site in the three NK receptor models is identical. Compounds fitted to pharmacophore Model 2 could be docked into the NK1, NK2 and NK3 receptor models after adjustment of the conformation of the flexible linker connecting the head and tail. Models I and 3 are not compatible with the receptor models.


Assuntos
Receptores de Taquicininas/química , Taquicininas/química , Sequência de Aminoácidos , Calorimetria , Cinética , Modelos Moleculares , Conformação Proteica , Receptores da Neurocinina-1/química , Receptores da Neurocinina-1/metabolismo , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/metabolismo , Receptores da Neurocinina-3/química , Receptores da Neurocinina-3/metabolismo , Receptores de Taquicininas/metabolismo , Taquicininas/metabolismo , Termodinâmica
17.
J Comput Aided Mol Des ; 16(4): 273-86, 2002 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-12400857

RESUMO

A neurokinin 2 (NK2) antagonist pharmacophore model has been developed on the basis of five non-peptide antagonists from several structurally diverse classes. To evaluate the pharmacophore model, another 20 antagonists were fitted to the model. By use of exhaustive conformational analysis (MMFFs force field and the GB/SA hydration model) and least-squares molecular superimposition studies, 23 of the 25 antagonists were fitted to the model in a low energy conformation with a low RMS value. The pharmacophore model is described by four pharmacophore elements: Three hydrophobic groups and a hydrogen bond donor represented as a vector. The hydrophobic groups are generally aromatic rings, but this is not a requirement. The antagonists bind in an extended conformation with two aromatic rings in a parallel displaced and tilted conformation. The model was able to explain the enantioselectivity of SR48968 and GR159897.


Assuntos
Receptores da Neurocinina-2/antagonistas & inibidores , Simulação por Computador , Desenho Assistido por Computador , Desenho de Fármacos , Ligação de Hidrogênio , Concentração de Íons de Hidrogênio , Modelos Moleculares , Conformação Molecular , Receptores da Neurocinina-2/química , Estereoisomerismo , Termodinâmica
18.
Bioorg Med Chem Lett ; 12(21): 3161-5, 2002 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-12372524

RESUMO

The synthesis and binding affinity for hNK(1) and hNK(2) receptors of a series of diacyl substituted 2-aryl piperazines are described. SAR evaluation led to the racemic derivative 11g as an apparent dual inhibitor. Chiral chromatographic separation of 11g led to the observation that NK(1) activity was shown by one enantiomer (13a) and NK(2) activity was shown by the other enantiomer (13b). X-ray crystallographic analysis of the crystalline di-BOC derivative of the NK(2) active piperazine (15) showed that the 2R configuration was associated with NK(2) activity. Further derivatization indicated that dual NK(1)/NK(2) activity could be built into the 2R series.


Assuntos
Piperazinas/síntese química , Receptores da Neurocinina-1/metabolismo , Receptores da Neurocinina-2/metabolismo , Aminoácidos/química , Animais , Cricetinae , Cristalografia por Raios X , Cobaias , Técnicas In Vitro , Masculino , Modelos Moleculares , Conformação Molecular , Piperazinas/química , Piperidinas/farmacologia , Receptores da Neurocinina-1/química , Receptores da Neurocinina-1/efeitos dos fármacos , Receptores da Neurocinina-2/química , Receptores da Neurocinina-2/efeitos dos fármacos , Estereoisomerismo , Relação Estrutura-Atividade , Traqueia/efeitos dos fármacos , Ducto Deferente/efeitos dos fármacos , Ducto Deferente/metabolismo
19.
Bioorg Med Chem Lett ; 12(20): 2945-8, 2002 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-12270180

RESUMO

Non peptide products have been found to show nanomolar binding and functional affinities at the human tachykinin NK-2 receptor. The new antagonists do not possess stereogenic centers and their thermal behaviour in solution is featured by a peculiar set of conformational stereoisomers. A macroscopic viewpoint is preferentially adopted to rationalize the obtained results.


Assuntos
Peptídeos/farmacologia , Receptores da Neurocinina-2/antagonistas & inibidores , Cromatografia Líquida de Alta Pressão , Humanos , Ligantes , Espectrometria de Massas , Peptídeos/química , Peptídeos Cíclicos/farmacologia , Receptores da Neurocinina-2/química , Espectrofotometria Ultravioleta , Estereoisomerismo
20.
J Biol Chem ; 277(44): 42034-48, 2002 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-12185075

RESUMO

By combining real time measurements of agonist binding, by fluorescence resonance energy transfer, and of subsequent responses, we proposed previously that the neurokinin NK2 receptor preexists in equilibrium between three states: inactive, calcium-triggering, and cAMP-producing. Thr(24) and Phe(26) of the NK2 receptor extracellular domain are considered to interact with neuropeptide agonists based on the reduction of affinity when they are substituted by alanine. Using fluorescence resonance energy transfer, we now quantify the binding kinetics of two Texas Red-modified neurokinin A agonists to the fluorescent wild-type (Y-NK2wt) and the mutant (Y-NK2mut) receptor carrying Thr(24) --> Ala and Phe(26) --> Ala mutations. TR1-neurokinin A binds with a fast component and a slow component to the Y-NK2wt receptor and triggers both a calcium and a cAMP response. In contrast, on the mutant receptor, it binds in a single fast step with a lower apparent affinity and activates only the calcium response. Another agonist, TRC4-neurokinin A, binds to both wild-type and mutant receptors in a single fast step, with similar affinities and kinetics and promotes only calcium signaling. Kinetic modeling of ligand binding and receptor interconversions is carried out to analyze phenotypic changes in terms of binding alterations or changes in the transitions between conformational states. We show that the binding and response properties of the Y-NK2mut receptor are best described according to a phenotype where a reduction of the transition between the inactive and the active states occurs.


Assuntos
Cálcio/metabolismo , AMP Cíclico/fisiologia , Receptores da Neurocinina-2/química , Transferência Ressonante de Energia de Fluorescência , Humanos , Cinética , Modelos Teóricos , Mutação , Neurocinina A/metabolismo , Conformação Proteica , Receptores da Neurocinina-1/metabolismo , Receptores da Neurocinina-2/agonistas , Receptores da Neurocinina-2/fisiologia , Relação Estrutura-Atividade , Substância P/metabolismo
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