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1.
J Pharmacol Exp Ther ; 356(2): 410-23, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26645429

RESUMO

Traf2- and Nck-interacting kinase (TNIK) is a serine/threonine kinase highly expressed in the brain and enriched in the postsynaptic density of glutamatergic synapses in the mammalian brain. Accumulating genetic evidence and functional data have implicated TNIK as a risk factor for psychiatric disorders. However, the endogenous substrates of TNIK in neurons are unknown. Here, we describe a novel selective small molecule inhibitor of the TNIK kinase family. Using this inhibitor, we report the identification of endogenous neuronal TNIK substrates by immunoprecipitation with a phosphomotif antibody followed by mass spectrometry. Phosphorylation consensus sequences were defined by phosphopeptide sequence analysis. Among the identified substrates were members of the delta-catenin family including p120-catenin, δ-catenin, and armadillo repeat gene deleted in velo-cardio-facial syndrome (ARVCF), each of which is linked to psychiatric or neurologic disorders. Using p120-catenin as a representative substrate, we show TNIK-induced p120-catenin phosphorylation in cells requires intact kinase activity and phosphorylation of TNIK at T181 and T187 in the activation loop. Addition of the small molecule TNIK inhibitor or knocking down TNIK by two shRNAs reduced endogenous p120-catenin phosphorylation in cells. Together, using a TNIK inhibitor and phosphomotif antibody, we identify endogenous substrates of TNIK in neurons, define consensus sequences for TNIK, and suggest signaling pathways by which TNIK influences synaptic development and function linked to psychiatric and neurologic disorders.


Assuntos
Sequência Consenso/fisiologia , Neurônios/metabolismo , Proteínas Serina-Treonina Quinases/genética , Proteínas Serina-Treonina Quinases/metabolismo , Sequência de Aminoácidos , Animais , Células COS , Células Cultivadas , Chlorocebus aethiops , Feminino , Quinases do Centro Germinativo , Células HEK293 , Humanos , Masculino , Dados de Sequência Molecular , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Fosforilação/fisiologia , Ratos , Especificidade por Substrato/fisiologia
2.
PLoS Biol ; 11(12): e1001750, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24391470

RESUMO

Morphological development of fungi and their combined production of secondary metabolites are both acting in defence and protection. These processes are mainly coordinated by velvet regulators, which contain a yet functionally and structurally uncharacterized velvet domain. Here we demonstrate that the velvet domain of VosA is a novel DNA-binding motif that specifically recognizes an 11-nucleotide consensus sequence consisting of two motifs in the promoters of key developmental regulatory genes. The crystal structure analysis of the VosA velvet domain revealed an unforeseen structural similarity with the Rel homology domain (RHD) of the mammalian transcription factor NF-κB. Based on this structural similarity several conserved amino acid residues present in all velvet domains have been identified and shown to be essential for the DNA binding ability of VosA. The velvet domain is also involved in dimer formation as seen in the solved crystal structures of the VosA homodimer and the VosA-VelB heterodimer. These findings suggest that defence mechanisms of both fungi and animals might be governed by structurally related DNA-binding transcription factors.


Assuntos
Proteínas de Ligação a DNA/genética , Regulação Fúngica da Expressão Gênica/fisiologia , NF-kappa B/genética , Aspergillus nidulans/genética , Aspergillus nidulans/fisiologia , Sequência Consenso/genética , Sequência Consenso/fisiologia , DNA Fúngico/genética , DNA Fúngico/fisiologia , Proteínas de Ligação a DNA/fisiologia , Regulação da Expressão Gênica no Desenvolvimento/genética , Regulação da Expressão Gênica no Desenvolvimento/fisiologia , Regulação Fúngica da Expressão Gênica/genética , Genes Fúngicos/genética , Genes Fúngicos/fisiologia , Genes rel/genética , Genes rel/fisiologia , NF-kappa B/fisiologia
3.
J Neurochem ; 120(6): 899-912, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22225570

RESUMO

Aquaporin-4, a predominant water channel in the brain, is specifically expressed in astrocyte endfeet and plays a central role in water homeostasis, neuronal activity, and cell migration in the brain. It has two dominant isoforms called M1 and M23, whose mRNA is driven by distinct promoters located upstream of exons 0 and 1 of the aquaporin-4 gene, respectively. To identify cis-acting elements responsible for the astrocyte-specific transcription of M1 mRNA, the promoter activity of the 5'-flanking region upstream of exon 0 in primary cultured mouse astrocytes was examined by luciferase assay, and sequences, where nuclear factors bind, were identified by electrophoretic mobility shift assay. An astrocyte-specific activity enhancing transcription from the M1 promoter was observed within ∼2 kb from the transcriptional start sites of M1 mRNA. At least five elements clustered within the 286-bp region were found to function as a novel astrocyte-specific enhancer. Among the five elements, a consensus sequence of Pit-1/Oct/Unc-86 (POU) transcription factors was indispensable to the astrocyte-specific enhancer since disruption of the POU motif completely abolished the enhancer activity in astrocytes. However, the POU motif alone had little activity, indicating the requirement for cooperation with other upstream elements to exert full enhancer activity.


Assuntos
Aquaporina 4/genética , Sequência Consenso/fisiologia , Elementos Facilitadores Genéticos/fisiologia , Fatores do Domínio POU/química , Animais , Aquaporina 4/química , Astrócitos , Células Cultivadas , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Ensaio de Desvio de Mobilidade Eletroforética , Éxons/fisiologia , Camundongos , Dados de Sequência Molecular , Fatores do Domínio POU/genética , Transfecção
4.
Exp Cell Res ; 316(1): 68-77, 2010 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-19744480

RESUMO

Myosin phosphatase target subunit 1 (MYPT1), together with catalytic subunit of type1 delta isoform (PP1cdelta) and a small 20-kDa regulatory unit (M20), form a heterotrimeric holoenzyme, myosin phosphatase (MP), which is responsible for regulating the extent of myosin light chain phosphorylation. Here we report the identification and characterization of a molecular interaction between Seven in absentia homolog 2 (SIAH2) and MYPT1 that resulted in the proteasomal degradation of the latter in mammalian cells, including neurons and glia. The interaction involved the substrate binding domain of SIAH2 (aa 116-324) and a central region of MYPT1 (aa 445-632) containing a degenerate consensus Siah-binding motif RLAYVAP (aa 493-499) evolutionally conserved from fish to humans. These findings suggest a novel mechanism whereby the ability of MP to modulate myosin light chain might be regulated by the degradation of its targeting subunit MYPT1 through the SIAH2-ubiquitin-proteasomal pathway. In this manner, the turnover of MYPT1 would serve to limit the duration and/or magnitude of MP activity required to achieve a desired physiological effect.


Assuntos
Fosfatase de Miosina-de-Cadeia-Leve/metabolismo , Proteínas Nucleares/metabolismo , Ubiquitina-Proteína Ligases/metabolismo , Sequência de Aminoácidos , Animais , Astrócitos/metabolismo , Sítios de Ligação/fisiologia , Linhagem Celular , Linhagem Celular Tumoral , Células Cultivadas , Sequência Consenso/fisiologia , Inibidores de Cisteína Proteinase/farmacologia , Citoplasma/metabolismo , Expressão Gênica/genética , Humanos , Camundongos , Camundongos Endogâmicos , Dados de Sequência Molecular , Mutação/fisiologia , Fosfatase de Miosina-de-Cadeia-Leve/genética , Neurônios/metabolismo , Proteínas Nucleares/genética , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Complexo de Endopeptidases do Proteassoma/metabolismo , Inibidores de Proteassoma , Ligação Proteica/fisiologia , Domínios e Motivos de Interação entre Proteínas/fisiologia , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Homologia de Sequência de Aminoácidos , Transfecção , Técnicas do Sistema de Duplo-Híbrido , Ubiquitina-Proteína Ligases/genética
5.
Mol Cell ; 36(1): 39-50, 2009 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-19818708

RESUMO

In the largest E3 ligase subfamily, Cul3 binds a BTB domain, and an associated protein-interaction domain such as MATH recruits substrates for ubiquitination. Here, we present biochemical and structural analyses of the MATH-BTB protein, SPOP. We define a SPOP-binding consensus (SBC) and determine structures revealing recognition of SBCs from the phosphatase Puc, the transcriptional regulator Ci, and the chromatin component MacroH2A. We identify a dimeric SPOP-Cul3 assembly involving a conserved helical structure C-terminal of BTB domains, which we call "3-box" due to its facilitating Cul3 binding and its resemblance to F-/SOCS-boxes in other cullin-based E3s. Structural flexibility between the substrate-binding MATH and Cul3-binding BTB/3-box domains potentially allows a SPOP dimer to engage multiple SBCs found within a single substrate, such as Puc. These studies provide a molecular understanding of how MATH-BTB proteins recruit substrates to Cul3 and how their dimerization and conformational variability may facilitate avid interactions with diverse substrates.


Assuntos
Proteínas Culina/química , Proteínas Nucleares/química , Proteínas Repressoras/química , Ubiquitina-Proteína Ligases/química , Proteínas Adaptadoras de Transdução de Sinal/química , Proteínas Adaptadoras de Transdução de Sinal/genética , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Sequência de Aminoácidos , Animais , Proteínas Correpressoras , Sequência Consenso/fisiologia , Cristalografia por Raios X , Proteínas Culina/genética , Proteínas Culina/metabolismo , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Proteínas de Drosophila/química , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Drosophila melanogaster , Histonas/química , Histonas/genética , Histonas/metabolismo , Humanos , Modelos Moleculares , Chaperonas Moleculares , Mutação/fisiologia , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Fosfoproteínas Fosfatases/química , Fosfoproteínas Fosfatases/genética , Fosfoproteínas Fosfatases/metabolismo , Ligação Proteica/fisiologia , Domínios e Motivos de Interação entre Proteínas/fisiologia , Multimerização Proteica/fisiologia , Estrutura Quaternária de Proteína/fisiologia , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Proteínas Repressoras/genética , Proteínas Repressoras/metabolismo , Fatores de Transcrição/química , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Ubiquitina-Proteína Ligases/genética , Ubiquitina-Proteína Ligases/metabolismo , Ubiquitinação/fisiologia
6.
J Biol Chem ; 284(8): 5042-9, 2009 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-19074150

RESUMO

The novel alpha(1D) L-type Ca(2+) channel is expressed in supraventricular tissue and has been implicated in the pacemaker activity of the heart and in atrial fibrillation. We recently demonstrated that PKA activation led to increased alpha(1D) Ca(2+) channel activity in tsA201 cells by phosphorylation of the channel protein. Here we sought to identify the phosphorylated PKA consensus sites on the alpha(1) subunit of the alpha(1D) Ca(2+) channel by generating GST fusion proteins of the intracellular loops, N terminus, proximal and distal C termini of the alpha(1) subunit of alpha(1D) Ca(2+) channel. An in vitro PKA kinase assay was performed for the GST fusion proteins, and their phosphorylation was assessed by Western blotting using either anti-PKA substrate or anti-phosphoserine antibodies. Western blotting showed that the N terminus and C terminus were phosphorylated. Serines 1743 and 1816, two PKA consensus sites, were phosphorylated by PKA and identified by mass spectrometry. Site directed mutagenesis and patch clamp studies revealed that serines 1743 and 1816 were major functional PKA consensus sites. Altogether, biochemical and functional data revealed that serines 1743 and 1816 are major functional PKA consensus sites on the alpha(1) subunit of alpha(1D) Ca(2+) channel. These novel findings provide new insights into the autonomic regulation of the alpha(1D) Ca(2+) channel in the heart.


Assuntos
Canais de Cálcio/metabolismo , Sequência Consenso/fisiologia , Proteínas Quinases Dependentes de AMP Cíclico/metabolismo , Proteínas Musculares/metabolismo , Miocárdio/metabolismo , Animais , Canais de Cálcio/genética , Proteínas Quinases Dependentes de AMP Cíclico/genética , Proteínas Musculares/genética , Fosforilação , Subunidades Proteicas/genética , Subunidades Proteicas/metabolismo , Ratos
7.
J Biol Chem ; 284(6): 3750-61, 2009 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-19056739

RESUMO

JIPs (c-Jun N-terminal kinase interacting proteins), which scaffold JNK/p38 MAP kinase signaling modules, also bind conventional kinesins and are implicated in microtubule-based membrane trafficking in neuronal cells. Here we have identified a novel splice variant of the Jip4 gene product JLP(L) (JNK-interacting leucine zipper protein) in yeast-two hybrid screens with the phosphoinositide kinase PIKfyve. The interaction was confirmed by pulldown and coimmunoprecipitation assays in native cells. It engages the PIKfyve cpn60_TCP1 consensus sequence and the last 75 residues of the JLP C terminus. Subpopulations of both proteins cofractionated and populated similar structures at the cell perinuclear region. Because PIKfyve is essential in endosome-to-trans-Golgi network (TGN) cargo transport, we tested whether JLP is a PIKfyve functional partner in this trafficking pathway. Short interfering RNA (siRNA)-mediated depletion of endogenous JLP or PIKfyve profoundly delayed the microtubule-based transport of chimeric furin (Tac-furin) from endosomes to the TGN in a CHO cell line, which was rescued upon ectopic expression of siRNA-resistant JLP or PIKfyve constructs. Peptides from the contact sites in PIKfyve and JLP, or a dominant-negative PIKfyve mutant introduced into cells by ectopic expression or microinjection, induced a similar defect. Because Tac-TGN38 delivery from endosomes to the TGN, unlike that of Tac-furin, does not require intact microtubules, we monitored the effect of JLP and PIKfyve depletion or the interacting peptides administration on Tac-TGN38 trafficking. Remarkably, neither maneuver altered the Tac-TGN38 delivery to the TGN. Our data indicate that JLP interacts with PIKfyve and that both proteins and their association are required in microtubule-based, but not in microtubule-independent, endosome-to-TGN cargo transport.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Endossomos/metabolismo , Furina/metabolismo , Complexo de Golgi/metabolismo , Microtúbulos/metabolismo , Fosfatidilinositol 3-Quinases/metabolismo , Proteínas Adaptadoras de Transdução de Sinal/genética , Processamento Alternativo/fisiologia , Animais , Sequência de Bases , Células CHO , Sequência Consenso/fisiologia , Cricetinae , Cricetulus , Endossomos/genética , Furina/genética , Complexo de Golgi/genética , Humanos , Cinesinas/genética , Cinesinas/metabolismo , Camundongos , Microtúbulos/genética , Dados de Sequência Molecular , Fosfatidilinositol 3-Quinases/genética , Ligação Proteica/fisiologia , Estrutura Terciária de Proteína/fisiologia , Transporte Proteico , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Técnicas do Sistema de Duplo-Híbrido
8.
J Biol Chem ; 284(8): 5229-39, 2009 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-19106108

RESUMO

Coronavirus (CoV) nucleocapsid (N) protein is a highly phosphorylated protein required for viral replication, but whether its phosphorylation and the related kinases are involved in the viral life cycle is unknown. We found the severe acute respiratory syndrome CoV N protein to be an appropriate system to address this issue. Using high resolution PAGE analysis, this protein could be separated into phosphorylated and unphosphorylated isoforms. Mass spectrometric analysis and deletion mapping showed that the major phosphorylation sites were located at the central serine-arginine (SR)-rich motif that contains several glycogen synthase kinase (GSK)-3 substrate consensus sequences. GSK-3-specific inhibitor treatment dephosphorylated the N protein, and this could be recovered by the constitutively active GSK-3 kinase. Immunoprecipitation brought down both N and GSK-3 proteins in the same complex, and the N protein could be phosphorylated directly at its SR-rich motif by GSK-3 using an in vitro kinase assay. Mutation of the two priming sites critical for GSK-3 phosphorylation in the SR-rich motif abolished N protein phosphorylation. Finally, GSK-3 inhibitor was found to reduce N phosphorylation in the severe acute respiratory syndrome CoV-infected VeroE6 cells and decrease the viral titer and cytopathic effects. The effect of GSK-3 inhibitor was reproduced in another coronavirus, the neurotropic JHM strain of mouse hepatitis virus. Our results indicate that GSK-3 is critical for CoV N protein phosphorylation and suggest that it plays a role in regulating the viral life cycle. This study, thus, provides new avenues to further investigate the specific role of N protein phosphorylation in CoV replication.


Assuntos
Proteínas do Nucleocapsídeo/metabolismo , Coronavírus Relacionado à Síndrome Respiratória Aguda Grave/fisiologia , Replicação Viral/fisiologia , Motivos de Aminoácidos/fisiologia , Animais , Chlorocebus aethiops , Sequência Consenso/fisiologia , Proteínas do Nucleocapsídeo de Coronavírus , Efeito Citopatogênico Viral/efeitos dos fármacos , Efeito Citopatogênico Viral/fisiologia , Quinases da Glicogênio Sintase , Humanos , Camundongos , Vírus da Hepatite Murina/fisiologia , Mutação , Proteínas do Nucleocapsídeo/genética , Mapeamento de Peptídeos/métodos , Fosforilação/efeitos dos fármacos , Fosforilação/fisiologia , Inibidores de Proteínas Quinases/farmacologia , Células Vero , Replicação Viral/efeitos dos fármacos
9.
J Gen Physiol ; 132(5): 521-35, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18852303

RESUMO

Epithelial sodium channels (ENaCs) perform diverse physiological roles by mediating Na(+) absorption across epithelial surfaces throughout the body. Excessive Na(+) absorption in kidney and colon elevates blood pressure and in the airways disrupts mucociliary clearance. Potential therapies for disorders of Na(+) absorption require better understanding of ENaC regulation. Recent work has established partial and selective proteolysis of ENaCs as an important means of channel activation. In particular, channel-activating transmembrane serine proteases (CAPs) and cognate inhibitors may be important in tissue-specific regulation of ENaCs. Although CAP2 (TMPRSS4) requires catalytic activity to activate ENaCs, there is not yet evidence of ENaC fragments produced by this serine protease and/or identification of the site(s) where CAP2 cleaves ENaCs. Here, we report that CAP2 cleaves at multiple sites in all three ENaC subunits, including cleavage at a conserved basic residue located in the vicinity of the degenerin site (alpha-K561, beta-R503, and gamma-R515). Sites in alpha-ENaC at K149/R164/K169/R177 and furin-consensus sites in alpha-ENaC (R205/R231) and gamma-ENaC (R138) are responsible for ENaC fragments observed in oocytes coexpressing CAP2. However, the only one of these demonstrated cleavage events that is relevant for the channel activation by CAP2 takes place in gamma-ENaC at position R138, the previously identified furin-consensus cleavage site. Replacement of arginine by alanine or glutamine (alpha,beta,gammaR138A/Q) completely abolished both the Na(+) current (I(Na)) and a 75-kD gamma-ENaC fragment at the cell surface stimulated by CAP2. Replacement of gamma-ENaC R138 with a conserved basic residue, lysine, preserved both the CAP2-induced I(Na) and the 75-kD gamma-ENaC fragment. These data strongly support a model where CAP2 activates ENaCs by cleaving at R138 in gamma-ENaC.


Assuntos
Canais Epiteliais de Sódio/efeitos dos fármacos , Canais Epiteliais de Sódio/metabolismo , Proteínas de Membrana/farmacologia , Processamento de Proteína Pós-Traducional/fisiologia , Serina Endopeptidases/farmacologia , Substituição de Aminoácidos , Animais , Sítios de Ligação/genética , Sequência Consenso/efeitos dos fármacos , Sequência Consenso/fisiologia , Canais Epiteliais de Sódio/genética , Furina/metabolismo , Humanos , Hidrólise , Ativação do Canal Iônico/efeitos dos fármacos , Ativação do Canal Iônico/genética , Oócitos , Subunidades Proteicas/efeitos dos fármacos , Subunidades Proteicas/genética , Subunidades Proteicas/metabolismo , Sódio/metabolismo
10.
BMC Bioinformatics ; 9: 404, 2008 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-18823535

RESUMO

BACKGROUND: Microarray technology has unveiled transcriptomic differences among tumors of various phenotypes, and, especially, brought great progress in molecular understanding of phenotypic diversity of breast tumors. However, compared with the massive knowledge about the transcriptome, we have surprisingly little knowledge about regulatory mechanisms underling transcriptomic diversity. RESULTS: To gain insights into the transcriptional programs that drive tumor progression, we integrated regulatory sequence data and expression profiles of breast cancer into a Bayesian Network, and searched for cis-regulatory motifs statistically associated with given histological grades and prognosis. Our analysis found that motifs bound by ELK1, E2F, NRF1 and NFY are potential regulatory motifs that positively correlate with malignant progression of breast cancer. CONCLUSION: The results suggest that these 4 motifs are principal regulatory motifs driving malignant progression of breast cancer. Our method offers a more concise description about transcriptome diversity among breast tumors with different clinical phenotypes.


Assuntos
Neoplasias da Mama/genética , Biologia Computacional/métodos , Perfilação da Expressão Gênica/métodos , Regulação Neoplásica da Expressão Gênica , Algoritmos , Teorema de Bayes , Neoplasias da Mama/diagnóstico , Neoplasias da Mama/metabolismo , Neoplasias da Mama/patologia , Fator de Ligação a CCAAT/metabolismo , Sequência Consenso/fisiologia , Progressão da Doença , Fator de Transcrição E2F4/metabolismo , Feminino , Humanos , Análise em Microsséries/métodos , Fator 1 Nuclear Respiratório/metabolismo , Conformação de Ácido Nucleico , Prognóstico , Elementos Reguladores de Transcrição/fisiologia , Sequências Reguladoras de Ácido Nucleico/fisiologia , Transcrição Gênica/fisiologia , Proteínas Elk-1 do Domínio ets/metabolismo
11.
Neurosci Lett ; 436(2): 239-44, 2008 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-18400391

RESUMO

SUMOylation is emerging as an important mechanism for modulating protein function in many cell types. A large variety of proteins have been proposed as SUMO targets based on the presence of a consensus SUMOylation core motif (Psi-K-x-D/E). In neurons these include multiple synaptic proteins but it has not been established whether proteins carrying this motif are SUMOylated either in vitro or in vivo. Here we use a bacterial SUMOylation assay to systematically test for SUMO-1 modification of a selection of neuronal proteins containing one or more amino acid sequences predicted as high-probability SUMOylation sites in computer-based searches. Of the 39 proteins analysed only 14 sites were posttranslationally modified by SUMO-1, including the group III metabotropic glutamate receptors and the kainate receptor subunit GluR7. These results identify new candidate proteins that may be involved in the SUMO regulation of synaptic activity and also demonstrate that the presence of the Psi-K-x-D/E motif is not sufficient to indicate that a protein can be SUMOylated in this bacterial system.


Assuntos
Sequência Consenso/fisiologia , Proteínas do Tecido Nervoso/metabolismo , Processamento de Proteína Pós-Traducional , Proteína SUMO-1/fisiologia , Motivos de Aminoácidos , Sequência de Aminoácidos , Animais , Dados de Sequência Molecular , Proteínas do Tecido Nervoso/química , Proteína SUMO-1/química , Transcrição Gênica/fisiologia
12.
Oncogene ; 27 Suppl 1: S2-19, 2008 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19641503

RESUMO

BH3-only BCL-2 family proteins are effectors of canonical mitochondrial apoptosis. They discharge their pro-apoptotic functions through BH1-3 pro-apoptotic proteins such as BAX and BAK, while their activity is suppressed by BH1-4 anti-apoptotic BCL-2 family members. The precise mechanism by which BH3-only proteins mediate apoptosis remains unresolved. The existing data are consistent with three mutually non-exclusive models (1) displacement of BH1-3 proteins from complexes with BH1-4 proteins; (2) direct interaction with and conformational activation of BH1-3 proteins; and (3) membrane insertion and membrane remodeling. The BH3-only proteins appear to play critical roles in restraining cancer and inflammatory diseases such as rheumatoid arthritis. Molecules that mimic the effect of BH3-only proteins are being used in treatments against these diseases. The cell death activity of a subclass of BH3-only members (BNIP3 and BNIP3L) is linked to cardiomyocyte loss during heart failure. In addition to their established role in apoptosis, several BH3-only members also regulate diverse cellular functions in cell-cycle regulation, DNA repair and metabolism. Several members are implicated in the induction of autophagy and autophagic cell death, possibly through unleashing of the BH3-only autophagic effector Beclin 1 from complexes with BCL-2/BCL-xL. The Chapters included in the current Oncogene Review issues provide in-depth discussions on various aspects of major BH3-only proteins.


Assuntos
Proteínas Reguladoras de Apoptose/fisiologia , Apoptose/fisiologia , Sequência Consenso/fisiologia , Fragmentos de Peptídeos/fisiologia , Proteínas Proto-Oncogênicas c-bcl-2/fisiologia , Proteínas Proto-Oncogênicas/fisiologia , Sequência de Aminoácidos , Animais , Antineoplásicos/farmacologia , Antineoplásicos/uso terapêutico , Apoptose/efeitos dos fármacos , Proteínas Reguladoras de Apoptose/química , Proteínas Reguladoras de Apoptose/genética , Artrite Reumatoide/metabolismo , Autofagia/fisiologia , Proteínas de Caenorhabditis elegans/fisiologia , Ciclo Celular/fisiologia , Transformação Celular Neoplásica , Regulação da Expressão Gênica , Insuficiência Cardíaca/metabolismo , Insuficiência Cardíaca/patologia , Humanos , Mamíferos/metabolismo , Camundongos , Membranas Mitocondriais/metabolismo , Dados de Sequência Molecular , Família Multigênica , Fragmentos de Peptídeos/química , Conformação Proteica , Mapeamento de Interação de Proteínas , Estrutura Terciária de Proteína , Proteínas Proto-Oncogênicas/química , Proteínas Proto-Oncogênicas c-bcl-2/química
13.
J Neurosci Res ; 85(7): 1420-6, 2007 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-17348043

RESUMO

We examined the effect of treatment with intraventricular injection of a decoy oligonucleotide that binds and inhibits nuclear factor-kappaB on cytokine expression, ICAM-1 expression, neutrophil recruitment, apoptosis, and tissue injury in a model of neonatal hypoxic-ischemic cerebral injury with varying degrees of hypoxia. We found a reduction of interleukin-1beta, tumor necrosis factor-alpha, soluble ICAM-1, neutrophil counts, and activity after 2 hr of hypoxia, but not with 90 min of hypoxia. By contrast, a significant reduction of apoptosis was seen in animals treated after 90 min of hypoxia but not in those treated after 2 hr of hypoxia. Overall evidence of an inflammatory response was sparse, with low levels of ICAM-1 expression and neutrophil recruitment even in the more severe hypoxic ischemic injury. It is likely that the decoy oligonucleotide affects cerebral injury and apoptosis not through suppression of downstream elements of the inflammatory response but through other mechanisms, one of which is the reduction of transcription and synthesis of cytokines, which are known to affect other responses to cellular injury.


Assuntos
Apoptose/fisiologia , Córtex Cerebral/metabolismo , Regulação da Expressão Gênica/fisiologia , Hipóxia-Isquemia Encefálica/metabolismo , NF-kappa B/metabolismo , Animais , Animais Recém-Nascidos , Apoptose/imunologia , Sítios de Ligação , Córtex Cerebral/imunologia , Córtex Cerebral/patologia , Sequência Consenso/fisiologia , Modelos Animais de Doenças , Hipóxia-Isquemia Encefálica/imunologia , Imunoglobulina G/metabolismo , Injeções Intraventriculares , Molécula 1 de Adesão Intercelular/metabolismo , Interleucina-1beta/metabolismo , NF-kappa B/antagonistas & inibidores , Neutrófilos/imunologia , Oligonucleotídeos/administração & dosagem , Oligonucleotídeos/metabolismo , Ratos , Ratos Wistar , Índice de Gravidade de Doença , Fatores de Tempo , Fator de Necrose Tumoral alfa/metabolismo
14.
Learn Mem ; 13(5): 562-5, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16980545

RESUMO

The regulated trafficking of GluR1 contributes significantly to synaptic plasticity, but studies addressing the function of the GluR1 C-terminal PDZ-ligand domain in this process have produced conflicting results. Here, we resolve this conflict by showing that apparently similar C-terminal mutations of the GluR1 PDZ-ligand domain result in opposite physiological phenotypes during activity- and CamKII-induced synaptic plasticity.


Assuntos
Hipocampo/metabolismo , Plasticidade Neuronal/fisiologia , Receptores de AMPA/metabolismo , Sinapses/metabolismo , Transmissão Sináptica/fisiologia , Animais , Proteínas Quinases Dependentes de Cálcio-Calmodulina/metabolismo , Sequência Consenso/genética , Sequência Consenso/fisiologia , Potenciais Pós-Sinápticos Excitadores/fisiologia , Técnicas In Vitro , Ligantes , Mutação , Plasticidade Neuronal/genética , Estrutura Terciária de Proteína/fisiologia , Ratos , Receptores de AMPA/genética , Transmissão Sináptica/genética , Transfecção
15.
Mol Biol Cell ; 17(2): 585-97, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16280357

RESUMO

Histone deacetylases mediate critical cellular functions but relatively little is known about mechanisms controlling their expression, including expression of HDAC4, a class II HDAC implicated in the modulation of cellular differentiation and viability. Endogenous HDAC4 mRNA, protein levels and promoter activity were all readily repressed by mithramycin, suggesting regulation by GC-rich DNA sequences. We validated consensus binding sites for Sp1/Sp3 transcription factors in the HDAC4 promoter through truncation studies and targeted mutagenesis. Specific and functional binding by Sp1/Sp3 at these sites was confirmed with chromatin immunoprecipitation (ChIP) and electromobility shift assays (EMSA). Cotransfection of either Sp1 or Sp3 with a reporter driven by the HDAC4 promoter led to high activities in SL2 insect cells (which lack endogenous Sp1/Sp3). In human cells, restored expression of Sp1 and Sp3 up-regulated HDAC4 protein levels, whereas levels were decreased by RNA-interference-mediated knockdown of either protein. Finally, variable levels of Sp1 were in concordance with that of HDAC4 in a number of human tissues and cancer cell lines. These studies together characterize for the first time the activity of the HDAC4 promoter, through which Sp1 and Sp3 modulates expression of HDAC4 and which may contribute to tissue or cell-line-specific expression of HDAC4.


Assuntos
Regulação Enzimológica da Expressão Gênica , Histona Desacetilases/genética , Proteínas Repressoras/genética , Fator de Transcrição Sp1/fisiologia , Fator de Transcrição Sp3/fisiologia , Animais , Sequência de Bases , Sítios de Ligação , Células Cultivadas , Sequência Consenso/fisiologia , Drosophila/citologia , Regulação Enzimológica da Expressão Gênica/efeitos dos fármacos , Células HeLa , Histona Desacetilases/efeitos dos fármacos , Histona Desacetilases/metabolismo , Humanos , Masculino , Dados de Sequência Molecular , Plicamicina/farmacologia , Regiões Promotoras Genéticas , Proteínas Repressoras/efeitos dos fármacos , Proteínas Repressoras/metabolismo , Fator de Transcrição Sp1/genética , Fator de Transcrição Sp3/genética , Distribuição Tecidual
16.
Appl Microbiol Biotechnol ; 69(3): 312-20, 2005 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-16088348

RESUMO

We constructed a library of synthetic stationary-phase promoters for Escherichia coli. For designing the promoters, the known -10 consensus sequence, as well as the extended -10 region, and an A/T-rich region downstream of the -10 region were kept constant, whereas sequences from -37 to -14 were partially or completely randomised. For detection and selection of stationary-phase promoters, green fluorescent protein (GFP) with enhanced fluorescence was used. To establish the library, 33 promoters were selected, which differ in strength from 670 to more than 13,000 specific fluorescence units, indicating that the strength of promoters can be modulated by the sequence upstream of the -10 region. DNA sequencing revealed a preferential insertion of nucleotides depending on the position. By expressing the promoters in an rpoS-deficient strain, a special group of stationary-phase promoters was identified, which were expressed exclusively or preferentially by RNA polymerase holoenzyme Esigma(s). The DNA sequence of these promoters differed significantly in the region from -25 to -16. Furthermore, it was shown that the DNA curvature of the promoter region had no effect on promoter strength. The broad range of promoter activities make these promoters very suitable for fine-tuning of gene expression and for cost-effective large-scale applications in industrial bioprocesses.


Assuntos
Sequência Consenso/fisiologia , Escherichia coli/genética , Regiões Promotoras Genéticas/genética , Sequência de Bases , DNA Bacteriano/fisiologia , Regulação Bacteriana da Expressão Gênica/fisiologia , Dados de Sequência Molecular , Análise de Sequência de DNA
17.
Genome Biol ; 5(11): R94, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15535870

RESUMO

Microarray analysis using clustering algorithms can suffer from lack of inter-method consistency in assigning related gene-expression profiles to clusters. Obtaining a consensus set of clusters from a number of clustering methods should improve confidence in gene-expression analysis. Here we introduce consensus clustering, which provides such an advantage. When coupled with a statistically based gene functional analysis, our method allowed the identification of novel genes regulated by NFkappaB and the unfolded protein response in certain B-cell lymphomas.


Assuntos
Sequência Consenso/fisiologia , Perfilação da Expressão Gênica/estatística & dados numéricos , Regulação da Expressão Gênica/fisiologia , Análise em Microsséries/estatística & dados numéricos , Modelos Genéticos , Análise por Conglomerados , Simulação por Computador , Perfilação da Expressão Gênica/métodos , Análise em Microsséries/métodos
18.
Biochem Biophys Res Commun ; 325(4): 1312-7, 2004 Dec 24.
Artigo em Inglês | MEDLINE | ID: mdl-15555570

RESUMO

Androgen receptor (AR) recognizes and binds to 15-bp palindromic androgen response element (ARE) sequences with high affinity in vitro, which consist of two hexameric half-sites arranged as inverted repeats with a 3-bp spacer. Although a few near-consensus ARE sequences have been actually identified in the transcriptional regulatory regions of androgen-responsive genes, it has been unclear whether the exact consensus sequences function as bona fide AREs in vivo. A genome-wide in silico screening of palindromic AREs identified 563 exact consensus sequences in the human genome. The distribution of perfect palindromic AREs among the chromosomes is basically consistent with the length of chromosomes. Using human prostate cancer cell line LNCaP treated with a synthetic androgen R1881 as a model, in vivo AR binding abilities of 21 consensus AREs were analyzed by chromatin immunoprecipitation. Of 21 genomic fragments containing perfect AREs in chromosome X, 8 fragments recruited more ARs (>4-fold enrichment) even compared with the proximal ARE region of prostate-specific antigen. A couple of proximal genes or putative transcripts in the vicinity of the perfect AREs were found to be androgen-responsive analyzed by quantitative RT-PCR. Our results suggest that some of perfect palindromic AREs could function as in vivo AR binding sites in the human genome and regulate gene transcription.


Assuntos
Androgênios/metabolismo , Neoplasias da Próstata/genética , Neoplasias da Próstata/metabolismo , Receptores Androgênicos/genética , Receptores Androgênicos/metabolismo , Elementos de Resposta/genética , Análise de Sequência de DNA/métodos , Androgênios/genética , Linhagem Celular Tumoral , Imunoprecipitação da Cromatina , Mapeamento Cromossômico , Sequência Consenso/fisiologia , Humanos , Masculino
19.
J Hypertens ; 21(11): 2111-24, 2003 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-14597855

RESUMO

BACKGROUND: Human endothelin-converting enzyme (ECE)-1, the key enzyme in endothelin biosynthesis, shows broad cell and tissue expression within the cardiovascular system. Expression of ECE-1c, which represents the major ECE-1 isoform, is directed by an alternative promoter, but the mechanisms of ECE-1c promoter regulation are largely unknown. As ECE-1c transcription is initiated from several start sites, we hypothesized that the ECE-1c promoter functions as a housekeeping promoter. OBJECTIVE: To investigate the putative housekeeping function of the ECE-1c promoter in vascular endothelial cells, which represent a main site of its expression. RESULTS: Using promoter reporter assays, gel shift and supershift assays, we have demonstrated, in human endothelial EA.hy926 cells, functionality of cis-acting elements for binding of the CAAT-box binding protein NF-YB, GATA-2) E2F-2, and a GC-box binding factor, which are spatially associated with transcriptional start sites of ECE-1c. In the more upstream promoter region we have identified three highly polymorphic dinucleotide repeats, 5'-(CA)n, (CG)n and 3'-(CA)n, which strongly affected promoter function in endothelial EA.hy926 cells (2.7-fold activation comparing the most active to the least active allele) and, in a similar manner, in human neuronal KELLY cells. Finally, by in-vitro methylation, we were able to achieve strong suppression of the ECE-1c promoter activity in endothelial cells. CONCLUSION: Our results provide a molecular explanation for constitutive expression of ECE-1c mRNA. Modulation by genetic and epigenetic mechanisms as revealed in our study may account for interindividual variation of the constitutive endothelin system activity in humans and thus influence individual predisposition to cardiovascular disease.


Assuntos
Ácido Aspártico Endopeptidases/metabolismo , Repetições de Microssatélites/fisiologia , Polimorfismo Genético , Regiões Promotoras Genéticas/fisiologia , Ácido Aspártico Endopeptidases/genética , Ácido Aspártico Endopeptidases/fisiologia , Fator de Ligação a CCAAT/fisiologia , Linhagem Celular , Sequência Consenso/fisiologia , Metilação de DNA , Proteínas de Ligação a DNA/fisiologia , Repetições de Dinucleotídeos , Fator de Transcrição E2F2 , Enzimas Conversoras de Endotelina , Fator de Transcrição GATA2 , Regulação da Expressão Gênica/fisiologia , Genoma , Humanos , Metaloendopeptidases , RNA Mensageiro/metabolismo , Sequências Repetitivas de Ácido Nucleico , Fator de Transcrição Sp1/genética , Fatores de Transcrição/fisiologia , Ativação Transcricional/fisiologia
20.
Circulation ; 108(4): 464-71, 2003 Jul 29.
Artigo em Inglês | MEDLINE | ID: mdl-12860918

RESUMO

BACKGROUND: The proliferative response of vascular smooth muscle cells (VSMCs) to various growth stimuli is critical for atherosclerosis and postangioplasty restenosis. Although tumor suppressor protein p53 plays a critical role in the elimination of cancerous cells, recent genetic studies have indicated that it also protects against atherosclerosis and restenosis. METHODS AND RESULTS: We examined the levels of p53 protein in normal VSMCs before and after serum stimulation. The p53 protein levels increased robustly on stimulation. Upregulated p53 protein was capable of binding to the p53 consensus sequence, as shown by electrophoretic mobility shift assay. In addition, p53 upregulation was associated with increases in the transcript and protein levels of p21WAF1/CIP1 and Bax, as shown by real-time reverse transcriptase-polymerase chain reaction and Western blot analysis, respectively. Furthermore, the upregulation of p21WAF1/CIP1 and Bax was followed by cell-cycle arrest and apoptosis induction, as shown by 5-bromo-2'-dUTP incorporation assay and terminal deoxynucleotidyl transferase-mediated dUTP nick end-labeling staining, respectively. Finally, double-staining analyses showed that the majority of p53-expressing cells also expressed p21WAF1/CIP1 and Bax proteins. CONCLUSIONS: p53 protein expression in quiescent VSMCs is paradoxically increased by application of a growth stimulus. Through the mediation of p21WAF1/CIP1 and Bax, the induced p53 protein negatively regulates the growth of dividing VSMCs, thereby minimizing the inappropriate accumulation of VSMCs. Therefore, p53 may be a negative regulator of VSMC growth.


Assuntos
Proteínas Sanguíneas/farmacologia , Retroalimentação Fisiológica/fisiologia , Músculo Liso Vascular/metabolismo , Proteínas Proto-Oncogênicas c-bcl-2 , Proteína Supressora de Tumor p53/metabolismo , Regulação para Cima/fisiologia , Apoptose/efeitos dos fármacos , Bromodesoxiuridina , Causalidade , Contagem de Células , Divisão Celular/efeitos dos fármacos , Células Cultivadas , Sequência Consenso/fisiologia , Inibidor de Quinase Dependente de Ciclina p21 , Ciclinas/genética , Ciclinas/metabolismo , Expressão Gênica/efeitos dos fármacos , Humanos , Marcação In Situ das Extremidades Cortadas , Músculo Liso Vascular/citologia , Músculo Liso Vascular/efeitos dos fármacos , Ligação Proteica , Proteínas Proto-Oncogênicas/genética , Proteínas Proto-Oncogênicas/metabolismo , Fase S/efeitos dos fármacos , Ativação Transcricional/efeitos dos fármacos , Proteína Supressora de Tumor p53/genética , Proteína X Associada a bcl-2
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