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1.
Adv Clin Exp Med ; 31(12): 1319-1326, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36083252

RESUMO

BACKGROUND: Carotid atherosclerosis (CAS) is one of the main causes of ischemic stroke. Currently, the clinical evidence for contrast-enhanced ultrasonography (CEUS) as a method for diagnosing CAS is still inadequate. Sirtuin-3 (SIRT3) is associated with the inflammation response; however, few studies have evaluated SIRT3 in CAS. OBJECTIVES: To investigate the role of SIRT3 in CAS patients and its diagnostic value for unstable plaques when combined with CEUS. MATERIAL AND METHODS: This is a prospective observational study including 517 CAS patients who were admitted to our hospital from January 2015 to December 2020. All patients received a normal Doppler ultrasound, CEUS and magnetic resonance imaging (MRI). The latter was used as the gold standard in evaluating plaque conditions. Serum SIRT3 levels were measured using an enzyme-linked immunosorbent assay (ELISA). Serum levels of total cholesterol (TC), triglycerides (TG), high-density lipoprotein cholesterol (HDL-ch), low-density lipoprotein cholesterol (LDL-ch), C-reactive protein (CRP), and interleukin (IL)-6 levels were measured and recorded. RESULTS: Patients with severe CAS showed significantly higher levels of CRP, IL-6, TC, and LDL-ch, a higher frequency of unstable plaques, as well as a lower level of HDL-ch. In patients with severe CAS and CAS patients with stable plaques, the levels of SIRT3 were markedly lower. Patients with a high expression of SIRT3 showed significantly lower levels of CRP, IL-6, TC and LDL-ch, and higher levels of HDL-ch, as well as a lower frequency of unstable plaques. Receiver operating characteristic (ROC) curves showed that the combination of CEUS and SIRT3 could achieve high sensitivity and specificity in the diagnosis of unstable plaques. High levels of C-reactive protein, IL-6, TC, TG and LDL-ch, as well as low levels of SIRT3 and HDL-ch, and current smoking were risk factors of unstable plaques in CAS patients. CONCLUSIONS: A low expression of SIRT3 predicted a higher risk for unstable plaques in CAS patients. The combination of CEUS and SIRT3 is a potential strategy for diagnosing unstable plaques.


Assuntos
Doenças das Artérias Carótidas , Placa Aterosclerótica , Sirtuína 3 , Humanos , Proteína C-Reativa/química , Doenças das Artérias Carótidas/diagnóstico por imagem , Doenças das Artérias Carótidas/patologia , HDL-Colesterol , LDL-Colesterol , Interleucina-6 , Placa Aterosclerótica/química , Placa Aterosclerótica/diagnóstico por imagem , Sirtuína 3/química , Sirtuína 3/metabolismo , Triglicerídeos , Ultrassonografia/métodos
2.
Nucleic Acids Res ; 49(8): 4203-4219, 2021 05 07.
Artigo em Inglês | MEDLINE | ID: mdl-33706382

RESUMO

Sirtuin 3 (SIRT3) is an NAD+-dependent deacetylase linked to a broad range of physiological and pathological processes, including aging and aging-related diseases. However, the role of SIRT3 in regulating human stem cell homeostasis remains unclear. Here we found that SIRT3 expression was downregulated in senescent human mesenchymal stem cells (hMSCs). CRISPR/Cas9-mediated depletion of SIRT3 led to compromised nuclear integrity, loss of heterochromatin and accelerated senescence in hMSCs. Further analysis indicated that SIRT3 interacted with nuclear envelope proteins and heterochromatin-associated proteins. SIRT3 deficiency resulted in the detachment of genomic lamina-associated domains (LADs) from the nuclear lamina, increased chromatin accessibility and aberrant repetitive sequence transcription. The re-introduction of SIRT3 rescued the disorganized heterochromatin and the senescence phenotypes. Taken together, our study reveals a novel role for SIRT3 in stabilizing heterochromatin and counteracting hMSC senescence, providing new potential therapeutic targets to ameliorate aging-related diseases.


Assuntos
Envelhecimento/metabolismo , Heterocromatina/metabolismo , Sirtuína 3/fisiologia , Envelhecimento/genética , Animais , Proteína 9 Associada à CRISPR , Sistemas CRISPR-Cas , Células Cultivadas , Senescência Celular/genética , Senescência Celular/fisiologia , Técnicas de Inativação de Genes , Células HEK293 , Heterocromatina/genética , Humanos , Masculino , Células-Tronco Mesenquimais/metabolismo , Células-Tronco Mesenquimais/fisiologia , Camundongos , Camundongos Nus , Camundongos SCID , Membrana Nuclear/metabolismo , Domínios Proteicos , Sirtuína 3/química , Sirtuína 3/genética
3.
J Chem Inf Model ; 61(3): 1105-1124, 2021 03 22.
Artigo em Inglês | MEDLINE | ID: mdl-33606530

RESUMO

Sirt1-3 are the most studied sirtuins, playing a key role in caloric-dependent epigenetic modifications. Since they are localized in distinct cellular compartments and act differently under various pathological conditions, selective inhibition would be a promising strategy to understand their biological function and to discover effective therapeutics. Here, sirtuin's inhibitor Ex527* is used as a probe to speculate the possible root cause of selective inhibition and differential structural dynamics of Sirt1-3. Comparative energetics and mutational studies revealed the criticality of residues I279 and I316 for the Sirt1 selectivity toward Ex527*. Furthermore, essential dynamics and residue network analysis revealed that the side-chain reorientation in residue F190 due to nonconserved residue Y191 played a major role in the formation of an extended selectivity pocket in Sirt2. These changes at the dynamical and residual level, which impact the internal wiring significantly, might help in rationally designing selective inhibitors against Sirt1-3.


Assuntos
Sirtuína 1/química , Sirtuína 2/química , Sirtuína 3/química , Sequência de Aminoácidos , Humanos , Conformação Proteica
4.
Bioorg Med Chem ; 28(7): 115356, 2020 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-32067892

RESUMO

Past few years have seen an active pursuit of the inhibitors for the deacylation catalyzed by the seven human sirtuins (i.e. SIRT1-7) as valuable chemical biological/pharmacological probes of this enzymatic deacylation and lead compounds for developing novel therapeutics for human diseases. In the current study, we prepared eight monocyclic and one bicyclic analogs of a linear pentapeptide-based potent (sub-µM IC50's) pan-SIRT1/2/3 inhibitor Zheng laboratory discovered recently that harbors the catalytic mechanism-based SIRT1/2/3 inhibitory warhead Nε-thioacetyl-lysine at its central position. We found that the bicyclic analog exhibited largely comparable SIRT1/2/3 inhibitory potencies to those of the parent linear pentapeptide, however, the former is proteolytically much more stable than the latter. Moreover, the bicyclic analog displayed very weak inhibition against SIRT5/6/7, was cell permeable, and exhibited an anti-proliferative effect on the human SK-MEL-2 melanoma cells. This bicyclic analog could be a lead for the future development of more potent and still selective pan-SIRT1/2/3 inhibitors whose use in studies on human sirtuin biology, pharmacology, and medicinal chemistry could complement with the use of the potent inhibitors selective for a single human sirtuin.


Assuntos
Lisina/análogos & derivados , Peptídeos/farmacologia , Sirtuína 1/antagonistas & inibidores , Sirtuína 2/antagonistas & inibidores , Sirtuína 3/antagonistas & inibidores , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Regulação da Expressão Gênica/efeitos dos fármacos , Humanos , Lisina/química , Modelos Moleculares , Estrutura Molecular , Peptídeos/química , Conformação Proteica , Sirtuína 1/química , Sirtuína 2/química , Sirtuína 3/química
5.
Int J Mol Sci ; 20(19)2019 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-31557786

RESUMO

Sirtuins (SIRTs) are seven nicotinamide adenine dinucleotide (NAD+)-dependent protein deacetylases enzymes (SIRT1-7) that play an important role in maintaining cellular homeostasis. Among those, the most studied are SIRT1 and SIRT3, a nuclear SIRT and a mitochondrial SIRT, respectively, which significantly impact with an increase in mammals' lifespan by modulating metabolic cellular processes. Particularly, when activated, both SIRT1 and 3 enhance pancreatic ß-cells' insulin release and reduce inflammation and oxidative stress pancreatic damage, maintaining then glucose homeostasis. Therefore, SIRT1 and 3 activators have been proposed to prevent and counteract metabolic age-related diseases, such as type 2 diabetes mellitus (T2DM). Physical activity (PA) has a well-established beneficial effect on phenotypes of aging like ß-cell dysfunction and diabetes mellitus. Recent experimental and clinical evidence reports that PA increases the expression levels of both SIRT1 and 3, suggesting that PA may exert its healthy contribute even by activating SIRTs. Therefore, in the present article, we discuss the role of SIRT1, SIRT3, and PA on ß-cell function and on diabetes. We also discuss the possible interaction between PA and activation of SIRTs as a possible therapeutic strategy to maintain glucose hemostasis and to prevent T2DM and its complications, especially in the elderly population.


Assuntos
Glucose/metabolismo , Homeostase , Sirtuína 1/química , Sirtuína 3/química , Animais , Diabetes Mellitus Tipo 2/etiologia , Diabetes Mellitus Tipo 2/metabolismo , Suscetibilidade a Doenças , Exercício Físico , Humanos , Células Secretoras de Insulina/metabolismo , Doenças Metabólicas/etiologia , Doenças Metabólicas/metabolismo , Sirtuína 1/metabolismo , Sirtuína 3/metabolismo
6.
Int J Biol Macromol ; 140: 454-468, 2019 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-31404596

RESUMO

Triple-negative breast cancer (TNBC) is an aggressive disease exemplified by a poor prognosis, greater degrees of relapse, the absence of hormonal receptors for coherent utilization of targeted therapy, poor response to currently available therapeutics and development of chemoresistance. Aberrant activity of sirtuins (SIRTs) has strong implications in the metastatic and oncogenic progression of TNBC. Synthetic SIRT inhibitors are effective, however, they have shown adverse side effects emphasizing the need for plant-derived inhibitors (PDIs). In the current study, we identified potential plant-derived sirtuin inhibitors using in silico approach i.e. molecular docking, ADMET and molecular dynamics simulations (MD). Docking studies revealed that Sulforaphane, Kaempferol and Apigenin exhibits the highest docking scores against SIRT1 & 5, 3 and 6 respectively. ADMET analysis of above hits demonstrated drug-like profile. MD of prioritized SIRTs-PDIs complexes displayed stability with insignificant deviations throughout the trajectory. Furthermore, we determined the effect of our prioritized molecules on cellular viability, global activity as well as protein expression of sirtuins and stemness of TNBC cells utilizing in vitro techniques. Our in vitro findings complements our in silico results. Collectively, these findings provide a better insight into the structural basis of sirtuin inhibition and can facilitate drug design process for TNBC management.


Assuntos
Apigenina/química , Isotiocianatos/química , Quempferóis/química , Sirtuínas/genética , Neoplasias de Mama Triplo Negativas/tratamento farmacológico , Apigenina/isolamento & purificação , Linhagem Celular Tumoral , Simulação por Computador , Feminino , Humanos , Isotiocianatos/isolamento & purificação , Quempferóis/isolamento & purificação , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Plantas/química , Sirtuína 1/antagonistas & inibidores , Sirtuína 1/química , Sirtuína 3/antagonistas & inibidores , Sirtuína 3/química , Sirtuínas/antagonistas & inibidores , Sirtuínas/química , Sulfóxidos , Neoplasias de Mama Triplo Negativas/genética , Neoplasias de Mama Triplo Negativas/patologia
7.
Theriogenology ; 122: 47-52, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30227304

RESUMO

Sirtuin3 (SIRT3) is a member of the Sirtuin family of NAD+-dependent deacetylase. They have evolved as a vital protein in preventing the activation of reactive oxygen species (ROS) in oocytes. A novel study on caprine SIRT3 was conducted, to characterize caprine SIRT3, to detect potential polymorphisms in SIRT3 and to analyze their association with litter size in the two indigenous goat breeds of India viz., the prolific Malabari and low prolific Attappady Black goats. A 1070 bp mRNA sequence of SIRT3 cDNA comprised of an ORF of 1002 bp encoding 333 amino acids, having 96% identity with bovine SIRT3. The genomic DNAs from the goats (n = 222) were subjected to PCR and single strand conformation polymorphism (SSCP) of exon 5 fragment (213 bp) of caprine SIRT3. On analysis, two genotypes viz., DD and DE were observed with frequencies of 0.63 and 0.37 respectively. Further sequencing of the PCR products of the respective genotypes revealed a novel synonymous SNP (MF176159:c.691C > T). Genotypes of this fragment had a significant influence on number of kids born (P < 0.05) with DD genotype being superior to DE genotype. These results highlight the role of SIRT3 in reproduction traits and the detected novel SNP would aid in the Marker Assisted Selection programmes and thus SIRT3 can considered as a potential candidate gene for reproduction traits in goats.


Assuntos
Cabras/genética , Tamanho da Ninhada de Vivíparos/genética , Sirtuína 3/genética , Animais , Estudos de Associação Genética , Genótipo , Cabras/fisiologia , Índia , Polimorfismo de Nucleotídeo Único , Análise de Sequência de RNA , Sirtuína 3/química
8.
Cancer Genomics Proteomics ; 15(1): 73-89, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29275365

RESUMO

BACKGROUND/AIM: Dysregulation of mitochondrial pathways is implicated in several diseases, including cancer. Notably, mitochondrial respiration and mitochondrial biogenesis are favored in some invasive cancer cells, such as osteosarcoma. Hence, the aim of the current work was to investigate the effects of 2-methoxyestradiol (2-ME), a potent anticancer agent, on the mitochondrial biogenesis of osteosarcoma cells. MATERIALS AND METHODS: Highly metastatic osteosarcoma 143B cells were treated with 2-ME separately or in combination with L-lactate, or with the solvent (non-treated control cells). Protein levels of α-syntrophin and peroxisome proliferator-activated receptor gamma, coactivator 1 alpha (PGC-1α) were determined by western blotting. Impact of 2-ME on mitochondrial mass, regulation of cytochrome c oxidase I (COXI) expression, and succinate dehydrogenase complex flavoprotein subunit A (SDHA) was determined by immunofluorescence analyses. Inhibition of sirtuin 3 (SIRT3) activity by 2-ME was investigated by fluorescence assay and also, using molecular docking and molecular dynamics simulations. RESULTS: L-lactate induced mitochondrial biogenesis pathway via up-regulation of COXI. 2-ME inhibited mitochondrial biogenesis via regulation of PGC-1α, COXI, and SIRT3 in a concentration-dependent manner as a consequence of nuclear recruitment of neuronal nitric oxide synthase and nitric oxide generation. It was also proved that 2-ME inhibited SIRT3 activity by binding to both the canonical and allosteric inhibitor binding sites. Moreover, regardless of the mitochondrial biogenesis pathway, 2-ME affected the expression of SDHA. CONCLUSION: Herein, mitochondrial biogenesis pathway regulation and SDHA were presented as novel targets of 2-ME, and moreover, 2-ME was demonstrated as a potent inhibitor of SIRT3. L-lactate was confirmed to exert pro-carcinogenic effects on osteosarcoma cells via the induction of the mitochondrial biogenesis pathway. Thus, L-lactate level may be considered as a prognostic biomarker for osteosarcoma.


Assuntos
Antineoplásicos/farmacologia , Complexo II de Transporte de Elétrons/metabolismo , Estradiol/análogos & derivados , Osteossarcoma/enzimologia , 2-Metoxiestradiol , Antineoplásicos/química , Proteínas de Ligação ao Cálcio/metabolismo , Linhagem Celular Tumoral , Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Estradiol/química , Estradiol/farmacologia , Humanos , Proteínas de Membrana/metabolismo , Mitocôndrias/efeitos dos fármacos , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Proteínas Musculares/metabolismo , Biogênese de Organelas , Osteossarcoma/metabolismo , Coativador 1-alfa do Receptor gama Ativado por Proliferador de Peroxissomo/metabolismo , Sirtuína 3/antagonistas & inibidores , Sirtuína 3/química
9.
Free Radic Biol Med ; 112: 287-297, 2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-28711502

RESUMO

The modulation of protein acetylation network is a promising strategy for life span extension and disease treatment (Sabari et al., 2016; Giblin et al., 2014) [1,2]. A variety of small molecules have been developed to target deacetylases, but extremely few of these molecules are capable of activating the mitochondrial NAD-dependent deacetylase sirtuin-3 (SIRT3) (Gertz and Steegborn, 2016; Scholz et al., 2015) [3,4]. Manganese superoxide dismutase (MnSOD) is the major superoxide scavenger in mitochondria, whose activity is regulated by SIRT3-mediated deacetylation, particularly at the Lys68 site (Chen et al., 2011) [5]. To investigate the influence of Lys68 acetylation on MnSOD activity, we produced a mutant MnSOD protein-bearing N-acetyllysine (AcK) at its Lys68 position through the genetic code expansion approach. We solved the crystal structure of this acetylated MnSOD (MnSODK68AcK), thus revealing the structural and electrostatic basis for the significant activity decrease upon Lys68 acetylation. On the basis of an assay we developed for the SIRT3-mediated deacetylation of MnSODK68AcK, we identified a novel SIRT3 activator, 7-hydroxy-3-(4'-methoxyphenyl) coumarin (C12), which binds to SIRT3 with high affinity and can promote the deacetylation and activation of MnSOD. C12 adds to the current repertoire of extremely few SIRT3 activators, which are potentially valuable for treating a wide array of diseases via modulating the cellular acetylome.


Assuntos
Cumarínicos/química , Lisina/análogos & derivados , Lisina/química , Processamento de Proteína Pós-Traducional , Sirtuína 3/química , Superóxido Dismutase/química , Acetilação , Sequência de Aminoácidos , Animais , Astrócitos/citologia , Astrócitos/enzimologia , Sítios de Ligação , Cumarínicos/metabolismo , Cristalografia por Raios X , Ativadores de Enzimas/química , Ativadores de Enzimas/metabolismo , Expressão Gênica , Humanos , Lisina/metabolismo , Mitocôndrias/enzimologia , Modelos Moleculares , Mutação , Cultura Primária de Células , Ligação Proteica , Domínios e Motivos de Interação entre Proteínas , Estrutura Secundária de Proteína , Ratos , Ratos Sprague-Dawley , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sirtuína 3/genética , Sirtuína 3/metabolismo , Eletricidade Estática , Superóxido Dismutase/genética , Superóxido Dismutase/metabolismo
10.
Chem Res Toxicol ; 30(3): 785-793, 2017 03 20.
Artigo em Inglês | MEDLINE | ID: mdl-28248093

RESUMO

Mitochondrial aldehyde dehydrogenase (ALDH2) plays a central role in the detoxification of reactive aldehydes generated through endogenous and exogenous sources. The biochemical regulation of enzyme activity through post-translational modification provides an intricate response system regulating mitochondrial detoxification pathways. ALDH2 is a known target of lysine acetylation, which arises as a consequence of mitochondrial bioenergetic flux and sirtuin deacetylase activity. The mitochondrial deacetylase Sirtuin 3 (SIRT3) has been reported to alter ALDH2 lysine acetylation status, yet the mechanism and consequence of this interaction remain unknown. The in vitro results presented here provide a novel biochemical approach using stable-isotope dilution mass spectrometry to elucidate which lysine residues are targeted by SIRT3 for deacetylation. Furthermore, HPLC-MS/MS and computational modeling elucidate a potential role for acetyl-Lys369 on ALDH2 in perturbing normal ß-nicotinamide adenine dinucleotide (NAD+) cofactor binding.


Assuntos
Aldeído Desidrogenase/metabolismo , Sirtuína 3/metabolismo , Acetilação , Aldeído Desidrogenase/química , Animais , Humanos , Lisina/química , Espectrometria de Massas , Sirtuína 3/química
11.
Mol Cell Biochem ; 426(1-2): 65-73, 2017 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-27864727

RESUMO

The carnitine/acylcarnitine transporter (CACT; SLC25A20) mediates an antiport reaction allowing entry of acyl moieties in the form of acylcarnitines into the mitochondrial matrix and exit of free carnitine. The transport function of CACT is crucial for the ß-oxidation pathway. In this work, it has been found that CACT is partially acetylated in rat liver mitochondria as demonstrated by anti-acetyl-lys antibody immunostaining. Acetylation was reversed by the deacetylase Sirtuin 3 in the presence of NAD+. After treatment of the mitochondrial extract with the deacetylase, the CACT activity, assayed in proteoliposomes, increased. The half-saturation constant of the CACT was not influenced, while the V max was increased by deacetylation. Sirtuin 3 was not able to deacetylate the CACT when incubation was performed in intact mitoplasts, indicating that the acetylation sites are located in the mitochondrial matrix. Prediction on the localization of acetylated residues by bioinformatics correlates well with the experimental data. Recombinant CACT treated with acetyl-CoA was partially acetylated by non-enzymatic mechanism with a corresponding decrease of transport activity. The experimental data indicate that acetylation of CACT inhibits its transport activity, and thus may contribute to the regulation of the mitochondrial ß-oxidation pathway.


Assuntos
Carnitina Aciltransferases/metabolismo , Proteínas Mitocondriais/metabolismo , Processamento de Proteína Pós-Traducional/fisiologia , Acetilação , Animais , Transporte Biológico Ativo/fisiologia , Carnitina Aciltransferases/química , Carnitina Aciltransferases/genética , Proteínas Mitocondriais/química , Proteínas Mitocondriais/genética , NAD/química , NAD/genética , NAD/metabolismo , Ratos , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sirtuína 3/química , Sirtuína 3/genética , Sirtuína 3/metabolismo
12.
J Cell Physiol ; 232(9): 2308-2311, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27791271

RESUMO

The mammalian Sirtuins are a family of highly conserved nicotinamide adenine dinucleotide (NAD+)-dependent histone deacetylase. The mammalian Sirtuins family has identified seven different types of sirtuin. Sirtuins 3(SirT3) is localized to mitochondria, and is a multiple functional protein deacylase through deacetylating a variety of substrates. Cellular senescence represents a permanent withdraw from cell cycle in response to diverse stress; it is controlled by the p53 and retinoblastoma protein (RB) tumor suppressors, and constitutes a potent anticancer mechanisms. p53 can be deacetylated by a protein complex containing histone deacetylases (HDAC1). There is possibility that SirT3 may also deacetylate p53. We introduce the recent research on the SirT3-p53 interplay directly and indirectly, and discuss the significance of p53 deacetylation by SirT3 in the aging and cancer. J. Cell. Physiol. 232: 2308-2311, 2017. © 2016 Wiley Periodicals, Inc.


Assuntos
Envelhecimento/metabolismo , Neoplasias/enzimologia , Transdução de Sinais , Sirtuína 3/metabolismo , Proteína Supressora de Tumor p53/metabolismo , Acetilação , Envelhecimento/patologia , Animais , Humanos , Modelos Moleculares , Neoplasias/patologia , Conformação Proteica , Sirtuína 3/química , Proteína Supressora de Tumor p53/química
13.
FEBS Lett ; 590(17): 3019-28, 2016 09.
Artigo em Inglês | MEDLINE | ID: mdl-27501476

RESUMO

SIRT1-7 play important roles in many biological processes and age-related diseases. In addition to a NAD(+) -dependent deacetylase activity, they can catalyze several other reactions, including the hydrolysis of long-chain fatty acyl lysine. To study the binding modes of sirtuins to long-chain acyl lysines, we solved the crystal structures of SIRT3 bound to either a H3K9-myristoylated- or a H3K9-palmitoylated peptide. Interaction of SIRT3 with the palmitoyl group led to unfolding of the α3-helix. The myristoyl and palmitoyl groups bind to the C-pocket and an allosteric site near the α3-helix, respectively. We found that the residues preceding the α3-helix determine the size of the C-pocket. The flexibility of the α2-α3 loop and the plasticity of the α3-helix affect the interaction with long-chain acyl lysine.


Assuntos
Lisina/química , Peptídeos/química , Sirtuína 3/química , Acilação , Sítios de Ligação , Catálise , Cristalografia por Raios X , Humanos , Hidrólise , Peptídeos/metabolismo , Conformação Proteica em alfa-Hélice , Sirtuína 3/metabolismo
14.
Zhonghua Gan Zang Bing Za Zhi ; 24(12): 948-951, 2016 Dec 20.
Artigo em Chinês | MEDLINE | ID: mdl-28073422

RESUMO

The deacetylase Sirtuin 3 (SIRT3) is a member of the Sirtuins mainly located in the mitochondrial matrix, and as a nicotinamide adenine dinucleotide (NAD+)-dependent deacetylase, it can regulate cellular energy metabolism and oxidative stress-related pathways. The liver is the largest solid organ in the human body and plays a very important role in substance metabolism. Based on the features of SIRT3, it is closely associated with the development and progression of certain liver diseases. This article reviews the research advances in the role of SIRT3 in non-alcoholic fatty liver disease, liver cancer, and hepatic ischemia-reperfusion injury.


Assuntos
Neoplasias Hepáticas/enzimologia , Proteínas Mitocondriais/metabolismo , NAD/metabolismo , Hepatopatia Gordurosa não Alcoólica/enzimologia , Traumatismo por Reperfusão/enzimologia , Sirtuína 3/metabolismo , Metabolismo Energético , Humanos , Neoplasias Hepáticas/patologia , Mitocôndrias/enzimologia , NAD/química , Hepatopatia Gordurosa não Alcoólica/patologia , Estresse Oxidativo , Sirtuína 3/química
15.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 12): 1498-510, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26625292

RESUMO

Sirtuins constitute a family of NAD(+)-dependent enzymes that catalyse the cleavage of various acyl groups from the ℇ-amino group of lysines. They regulate a series of cellular processes and their misregulation has been implicated in various diseases, making sirtuins attractive drug targets. To date, only a few sirtuin modulators have been reported that are suitable for cellular research and their development has been hampered by a lack of structural information. In this work, microseed matrix seeding (MMS) was used to obtain crystals of human Sirt3 in its apo form and of human Sirt2 in complex with ADP ribose (ADPR). Crystal formation using MMS was predictable, less error-prone and yielded a higher number of crystals per drop than using conventional crystallization screening methods. The crystals were used to solve the crystal structures of apo Sirt3 and of Sirt2 in complex with ADPR at an improved resolution, as well as the crystal structures of Sirt2 in complex with ADPR and the indoles EX527 and CHIC35. These Sirt2-ADPR-indole complexes unexpectedly contain two indole molecules and provide novel insights into selective Sirt2 inhibition. The MMS approach for Sirt2 and Sirt3 may be used as the basis for structure-based optimization of Sirt2/3 inhibitors in the future.


Assuntos
Cristalografia por Raios X , Sirtuína 2/química , Sirtuína 3/química , Adenosina Difosfato Ribose/química , Sequência de Aminoácidos , Domínio Catalítico , Cristalização , Inibidores Enzimáticos/farmacologia , Humanos , Indóis/farmacologia , Modelos Moleculares , Dados de Sequência Molecular , NAD/metabolismo , Estrutura Secundária de Proteína
16.
Biochem Biophys Res Commun ; 468(4): 807-12, 2015 Dec 25.
Artigo em Inglês | MEDLINE | ID: mdl-26577410

RESUMO

Mitochondrial pyruvate carrier (MPC), composed of MPC1 and MPC2, can modulate pyruvate oxidation in mitochondrial and MPC1 expression correlates with poor prognosis of multiple cancers. Here, we reported that MPC1 is acetylated and its main acetylation sites are: K45 and K46. Sirt3 binds to and deacetylates MPC1. High glucose decreases MPC1 acetylation level by increasing Sirt3-MPC1 binding. Furthermore, acetylation mimic mutation of MPC1 reduces it activity and abolishes its function in inhibition of colon cancer cell growth. These results reveal a novel post-translational regulation of MPC1 by Sirt3, which is important for its activity and colon cancer cell growth.


Assuntos
Proteínas de Transporte de Ânions/química , Glucose/química , Proteínas Mitocondriais/química , Modelos Químicos , Sirtuína 3/química , Acetilação , Sítios de Ligação , Simulação por Computador , Ativação Enzimática , Células HEK293 , Humanos , Proteínas de Transporte da Membrana Mitocondrial , Transportadores de Ácidos Monocarboxílicos , Ligação Proteica , Especificidade por Substrato
17.
Chembiochem ; 16(16): 2337-47, 2015 Nov 02.
Artigo em Inglês | MEDLINE | ID: mdl-26382620

RESUMO

Mitochondrial enzymes implicated in the pathophysiology of diabetes, cancer, and metabolic syndrome are highly regulated by acetylation. However, mitochondrial acetyltransferases have not been identified. Here, we show that acetylation and also other acylations are spontaneous processes that depend on pH value, acyl-CoA concentration and the chemical nature of the acyl residue. In the case of a peptide derived from carbamoyl phosphate synthetase 1, the rates of succinylation and glutarylation were up to 150 times than for acetylation. These results were confirmed by using the protein substrate cyclophilin A (CypA). Deacylation experiments revealed that SIRT3 exhibits deacetylase activity but is not able to remove any of the succinyl groups from CypA, whereas SIRT5 is an effective protein desuccinylase. Thus, the acylation landscape on lysine residues might largely depend on the enzymatic activity of specific sirtuins, and the availability and reactivity of acyl-CoA compounds.


Assuntos
Acil Coenzima A/metabolismo , Lisina/metabolismo , Peptídeos/metabolismo , Sirtuína 3/metabolismo , Acilação , Aminas/química , Aminas/metabolismo , Cristalografia por Raios X , Ciclofilina A/química , Ciclofilina A/metabolismo , Humanos , Cinética , Lisina/química , Mitocôndrias/metabolismo , Conformação Molecular , Peptídeos/química , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Sirtuína 3/química , Sirtuína 3/genética , Sirtuínas/química , Sirtuínas/genética , Sirtuínas/metabolismo , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Termodinâmica
18.
Eur J Pharm Sci ; 76: 27-32, 2015 Aug 30.
Artigo em Inglês | MEDLINE | ID: mdl-25936698

RESUMO

Sirtuins (SIRT1-SIRT7) are NAD dependent deacetylases and intriguing drug targets in for example neurodegenerative diseases and cancer. Virtual screening has been shown to be a fast and efficient method of discovering new sirtuin inhibitors. In this study, a new putative binding site on the zinc binding domain of sirtuins was utilized to screen the ZINC database virtually in order to discover new sirtuin inhibiting scaffolds. Altogether 26 compounds were tested in vitro and initially 15 inhibitors displayed >30% SIRT3 inhibition. However, the evaluation of raw data from in vitro assay revealed that many of the compounds had intrinsic property to interfere with the fluorescence signal at the assay wavelengths resulting in false positives. All compounds with over 30% SIRT3 inhibition were studied more closely for their behavior in the assay and eventually, three compounds were identified as novel sirtuin inhibitors. They displayed 32-40% SIRT3 and 21-60% SIRT2 inhibition. The inhibitors display two new scaffolds, the smaller of which can be considered as a promising fragment, which offers a base for structural optimization.


Assuntos
Desenho Assistido por Computador , Desenho de Fármacos , Inibidores de Histona Desacetilases/farmacologia , Simulação de Acoplamento Molecular , Sirtuína 2/antagonistas & inibidores , Sirtuína 3/antagonistas & inibidores , Regulação Alostérica , Artefatos , Sítios de Ligação , Domínio Catalítico , Inibidores de Histona Desacetilases/química , Inibidores de Histona Desacetilases/metabolismo , Ligação Proteica , Conformação Proteica , Sirtuína 2/química , Sirtuína 2/metabolismo , Sirtuína 3/química , Sirtuína 3/metabolismo , Espectrometria de Fluorescência , Relação Estrutura-Atividade
19.
Biochemistry ; 54(19): 3037-3050, 2015 May 19.
Artigo em Inglês | MEDLINE | ID: mdl-25897714

RESUMO

Acylation of lysine is an important protein modification regulating diverse biological processes. It was recently demonstrated that members of the human Sirtuin family are capable of catalyzing long chain deacylation, in addition to the well-known NAD(+)-dependent deacetylation activity [Feldman, J. L., Baeza, J., and Denu, J. M. (2013) J. Biol. Chem. 288, 31350-31356]. Here we provide a detailed kinetic and structural analysis that describes the interdependence of NAD(+)-binding and acyl-group selectivity for a diverse series of human Sirtuins, SIRT1-SIRT3 and SIRT6. Steady-state and rapid-quench kinetic analyses indicated that differences in NAD(+) saturation and susceptibility to nicotinamide inhibition reflect unique kinetic behavior displayed by each Sirtuin and depend on acyl substrate chain length. Though the rate of nucleophilic attack of the 2'-hydroxyl on the C1'-O-alkylimidate intermediate varies with acyl substrate chain length, this step remains rate-determining for SIRT2 and SIRT3; however, for SIRT6, this step is no longer rate-limiting for long chain substrates. Cocrystallization of SIRT2 with myristoylated peptide and NAD(+) yielded a co-complex structure with reaction product 2'-O-myristoyl-ADP-ribose, revealing a latent hydrophobic cavity to accommodate the long chain acyl group, and suggesting a general mechanism for long chain deacylation. Comparing two separately determined co-complex structures containing either a myristoylated peptide or 2'-O-myristoyl-ADP-ribose indicates there are conformational changes at the myristoyl-ribose linkage with minimal structural differences in the enzyme active site. During the deacylation reaction, the fatty acyl group is held in a relatively fixed position. We describe a kinetic and structural model to explain how various Sirtuins display unique acyl substrate preferences and how different reaction kinetics influence NAD(+) dependence. The biological implications are discussed.


Assuntos
Sirtuínas/química , Sirtuínas/metabolismo , Acilação , Catálise , Humanos , Cinética , NAD , Niacinamida/metabolismo , Ligação Proteica , Sirtuína 1/química , Sirtuína 1/metabolismo , Sirtuína 2/química , Sirtuína 2/metabolismo , Sirtuína 3/química , Sirtuína 3/metabolismo
20.
PLoS One ; 10(3): e0122297, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25811481

RESUMO

SIRT3 and SIRT5 have been shown to regulate mitochondrial fatty acid oxidation but the molecular mechanisms behind the regulation are lacking. Here, we demonstrate that SIRT3 and SIRT5 both target human very long-chain acyl-CoA dehydrogenase (VLCAD), a key fatty acid oxidation enzyme. SIRT3 deacetylates and SIRT5 desuccinylates K299 which serves to stabilize the essential FAD cofactor in the active site. Further, we show that VLCAD binds strongly to cardiolipin and isolated mitochondrial membranes via a domain near the C-terminus containing lysines K482, K492, and K507. Acetylation or succinylation of these residues eliminates binding of VLCAD to cardiolipin. SIRT3 deacetylates K507 while SIRT5 desuccinylates K482, K492, and K507. Sirtuin deacylation of recombinant VLCAD rescues membrane binding. Endogenous VLCAD from SIRT3 and SIRT5 knockout mouse liver shows reduced binding to cardiolipin. Thus, SIRT3 and SIRT5 promote fatty acid oxidation by converging upon VLCAD to promote its activity and membrane localization. Regulation of cardiolipin binding by reversible lysine acylation is a novel mechanism that is predicted to extrapolate to other metabolic proteins that localize to the inner mitochondrial membrane.


Assuntos
Acil-CoA Desidrogenase de Cadeia Longa/metabolismo , Cardiolipinas/metabolismo , Sirtuína 3/metabolismo , Sirtuínas/metabolismo , Acil-CoA Desidrogenase de Cadeia Longa/química , Acilação , Sequência de Aminoácidos , Animais , Sítios de Ligação , Cardiolipinas/química , Domínio Catalítico , Ativação Enzimática , Flavina-Adenina Dinucleotídeo/química , Flavina-Adenina Dinucleotídeo/metabolismo , Camundongos , Camundongos Knockout , Mitocôndrias Hepáticas/metabolismo , Membranas Mitocondriais/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Ligação Proteica , Conformação Proteica , Domínios e Motivos de Interação entre Proteínas , Alinhamento de Sequência , Sirtuína 3/química , Sirtuína 3/genética , Sirtuínas/química , Sirtuínas/genética
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