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1.
Biosens Bioelectron ; 178: 113049, 2021 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-33540323

RESUMO

Prompt diagnosis, patient isolation, and contact tracing are key measures to contain the coronavirus disease 2019 (COVID-19). Molecular tests are the current gold standard for COVID-19 detection, but are carried out at central laboratories, delaying treatment and control decisions. Here we describe a portable assay system for rapid, onsite COVID-19 diagnosis. Termed CODA (CRISPR Optical Detection of Anisotropy), the method combined isothermal nucleic acid amplification, activation of CRISPR/Cas12a, and signal generation in a single assay, eliminating extra manual steps. Importantly, signal detection was based on the ratiometric measurement of fluorescent anisotropy, which allowed CODA to achieve a high signal-to-noise ratio. For point-of-care operation, we built a compact, standalone CODA device integrating optoelectronics, an embedded heater, and a microcontroller for data processing. The developed system completed SARS-CoV-2 RNA detection within 20 min of sample loading; the limit of detection reached 3 copy/µL. When applied to clinical samples (10 confirmed COVID-19 patients; 10 controls), the rapid CODA test accurately classified COVID-19 status, in concordance with gold-standard clinical diagnostics.


Assuntos
Técnicas Biossensoriais/métodos , Teste de Ácido Nucleico para COVID-19/métodos , COVID-19/diagnóstico , Polarização de Fluorescência/métodos , SARS-CoV-2/genética , SARS-CoV-2/isolamento & purificação , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19/virologia , Teste de Ácido Nucleico para COVID-19/instrumentação , Teste de Ácido Nucleico para COVID-19/estatística & dados numéricos , Sistemas CRISPR-Cas , Desenho de Equipamento , Polarização de Fluorescência/instrumentação , Polarização de Fluorescência/estatística & dados numéricos , Humanos , Técnicas de Diagnóstico Molecular/instrumentação , Técnicas de Diagnóstico Molecular/métodos , Técnicas de Diagnóstico Molecular/estatística & dados numéricos , Técnicas de Amplificação de Ácido Nucleico/instrumentação , Técnicas de Amplificação de Ácido Nucleico/métodos , Técnicas de Amplificação de Ácido Nucleico/estatística & dados numéricos , Pandemias , Sistemas Automatizados de Assistência Junto ao Leito/estatística & dados numéricos , Processamento de Sinais Assistido por Computador , Razão Sinal-Ruído
2.
Biosens Bioelectron ; 178: 113041, 2021 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-33545551

RESUMO

The outbreak of COVID-19 caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been challenging human health worldwide. Loop-mediated isothermal amplification (LAMP) has been promptly applied to the detection of SARS-CoV-2 owing to its high amplification efficacy and less requirement of the thermal cycler. However, the vast majority of these LAMP-based assays depend on the non-specific detection of LAMP products, which can not discern the undesirable amplificons, likely to yield unreliable results. Herein, a sequence-specific LAMP assay was reported to detect SARS-CoV-2 using proofreading enzyme-mediated probe cleavage (named Proofman), which could realize real-time and visual detection without uncapping. This assay, introducing a proofreading enzyme and the fluorogenic probe to reverse-transcription LAMP (RT-Proofman-LAMP), can specifically detect the SARS-CoV-2 RNA with a detection limit of 100 copies. In addition to the real-time analysis, the assay is capable of endpoint visualization under a transilluminator within 50 min, providing a convenient reporting manner under the setting of point-of-care testing (POCT). In combination with different fluorophores, the one-pot multiplex assay was successfully achieved to detect multiple targets of SARS-CoV-2 and inner control simultaneously. In summary, the development of RT-Proofman-LAMP offers a versatile and highly-specific method for fast field screening and laboratory testing of SARS-CoV-2, making it a promising platform in COVID-19 diagnosis.


Assuntos
Teste de Ácido Nucleico para COVID-19/métodos , COVID-19/diagnóstico , COVID-19/virologia , Técnicas de Diagnóstico Molecular/métodos , Técnicas de Amplificação de Ácido Nucleico/métodos , SARS-CoV-2/genética , SARS-CoV-2/isolamento & purificação , Técnicas Biossensoriais/métodos , Técnicas Biossensoriais/estatística & dados numéricos , Teste de Ácido Nucleico para COVID-19/estatística & dados numéricos , Humanos , Limite de Detecção , Técnicas de Diagnóstico Molecular/estatística & dados numéricos , Reação em Cadeia da Polimerase Multiplex/métodos , Reação em Cadeia da Polimerase Multiplex/estatística & dados numéricos , Técnicas de Amplificação de Ácido Nucleico/estatística & dados numéricos , Pandemias , Sistemas Automatizados de Assistência Junto ao Leito/estatística & dados numéricos , RNA Viral/análise , RNA Viral/genética , Sensibilidade e Especificidade
3.
Biosens Bioelectron ; 178: 113008, 2021 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-33515984

RESUMO

The association of mortality with the early humoral response to SARS-CoV-2 infection within the first few days after onset of symptoms (DAOS) has not been thoroughly investigated partly due to a lack of sufficiently sensitive antibody testing methods. Here we report two sensitive and automated testing-on-a-probe (TOP) biosensor assays for SARS-CoV-2 viral specific total antibodies (TAb) and surrogate neutralizing antibodies (SNAb), which are suitable for clinical use. The TOP assays employ an RBD-coated quartz probe using a Cy5-Streptavidin-polysacharide conjugate to improve sensitivity and minimize interference. Disposable cartridges containing pre-dispensed reagents require no liquid manipulation or fluidics during testing. The TOP-TAb assay exhibited higher sensitivity in the 0-7 DAOS window than a widely used FDA-EUA assay. The rapid and automated TOP-SNAb correlated well with two well-established SARS-CoV-2 virus neutralization tests. The clinical utility of the TOP assays was demonstrated by evaluating early antibody responses in 120 SARS-CoV-2 RT-PCR positive adult hospitalized patients. Higher TAb and SNAb positivity rates and more robust antibody responses at patient's initial hospital presentation were seen in inpatients who survived COVID-19 than those who died in the hospital. Survival analysis using the Cox Proportional Hazards Model showed that patients who had negative TAb and/or SNAb at initial hospital presentation were at a higher risk of in-hospital mortality. Furthermore, TAb and SNAb levels at presentation were inversely associated with SARS-CoV-2 viral load based on concurrent RT-PCR testing. Overall, the sensitive and automated TAb and SNAb assays allow the detection of early SARS-CoV-2 antibodies which associate with mortality.


Assuntos
Anticorpos Antivirais/sangue , Técnicas Biossensoriais/instrumentação , Teste Sorológico para COVID-19/instrumentação , COVID-19/imunologia , COVID-19/mortalidade , SARS-CoV-2/imunologia , Adulto , Idoso , Idoso de 80 Anos ou mais , Anticorpos Neutralizantes/sangue , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19/virologia , Teste de Ácido Nucleico para COVID-19/estatística & dados numéricos , Teste Sorológico para COVID-19/estatística & dados numéricos , Estudos de Coortes , Desenho de Equipamento , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Testes de Neutralização/estatística & dados numéricos , Cidade de Nova Iorque/epidemiologia , Pandemias , Modelos de Riscos Proporcionais , Estudos Retrospectivos , Fatores de Risco , SARS-CoV-2/genética , SARS-CoV-2/isolamento & purificação , Sensibilidade e Especificidade , Adulto Jovem
4.
Biosens Bioelectron ; 176: 112942, 2021 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-33401144

RESUMO

2019 novel coronavirus (2019-nCoV) with strong contagion in the crowd, has ravaged worldwide and severely impacts the human health and epidemic prevention system, by producing a series of significant stress reactions in the body to induce further cytokine storm. Transcription factors (TFs) served as essential DNA binding proteins play an integral role in regulating cytokine storm, and the detection of it in the human coronavirus environment provides especially valuable approaches to diagnosis and treatment of 2019-nCoV and development of antiviral drugs. In this work, an entropy-driven electrochemiluminescence (ECL) biosensor was constructed for ultra-sensitive bioassay of NF-κB p50. The strategy primarily capitalizing the splendid double-stranded DNA (dsDNA) binding properties of transcription factors, employing GOAu-Ru composite material as ECL emitter, utilizing entropy-driven reactions for signal amplification method, offered a repeatable proposal for TFs detection. In the absence of TFs, the released DNA1 further went in the entropy-driven reaction, contributing to an "ECL off" state. However, in the presence of TFs, the dsDNA avoided being digested, which blocked DNA1 for participating in the entropy-driven reaction, and the system exhibited an "ECL on" state. Most importantly, the ECL bioanalytical method denoted broad application prospects for NF-κB p50 detection with a lower detection limit (9.1 pM).


Assuntos
Técnicas Biossensoriais/métodos , COVID-19/imunologia , Síndrome da Liberação de Citocina/imunologia , Subunidade p50 de NF-kappa B/análise , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19/complicações , Síndrome da Liberação de Citocina/etiologia , Técnicas Eletroquímicas/métodos , Técnicas Eletroquímicas/estatística & dados numéricos , Entropia , Humanos , Limite de Detecção , Medições Luminescentes/métodos , Medições Luminescentes/estatística & dados numéricos , Pandemias , SARS-CoV-2 , Sensibilidade e Especificidade
5.
Biosens Bioelectron ; 178: 113015, 2021 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-33493896

RESUMO

Dependable, specific and rapid diagnostic methods for severe acute respiratory syndrome ß-coronavirus (SARS-CoV-2) detection are needed to promote public health interventions for coronavirus disease 2019 (COVID-19). Herein, we have established an entropy-driven amplified electrochemiluminescence (ECL) strategy to detect the RNA-dependent RNA polymerase (RdRp) gene of SARS-CoV-2 known as RdRp-COVID which as the target for SARS-CoV-2 plays an essential role in the diagnosis of COVID-19. For the construction of the sensors, DNA tetrahedron (DT) is modified on the surface of the electrode to furnish robust and programmable scaffolds materials, upon which target DNA-participated entropy-driven amplified reaction is efficiently conducted to link the Ru (bpy)32+ modified S3 to the linear ssDNA at the vertex of the tetrahedron and eventually present an "ECL on" state. The rigid tetrahedral structure of the DT probe enhances the ECL intensity and avoids the cross-reactivity between single-stranded DNA, thus increasing the sensitivity of the assays. The enzyme-free entropy-driven reaction prevents the use of expensive enzyme reagents and facilitates the realization of large-scale screening of SARS-CoV-2 patients. Our DT-based ECL sensor has demonstrated significant specificity and high sensitivity for SARS-CoV-2 with a limit of detection (LOD) down to 2.67 fM. Additionally, our operational method has achieved the detection of RdRp-COVID in human serum samples, which supplies a reliable and feasible sensing platform for the clinical bioanalysis.


Assuntos
Técnicas Biossensoriais/instrumentação , Teste de Ácido Nucleico para COVID-19/instrumentação , COVID-19/diagnóstico , COVID-19/virologia , RNA-Polimerase RNA-Dependente de Coronavírus/genética , SARS-CoV-2/genética , SARS-CoV-2/isolamento & purificação , Técnicas Biossensoriais/estatística & dados numéricos , Teste de Ácido Nucleico para COVID-19/estatística & dados numéricos , RNA-Polimerase RNA-Dependente de Coronavírus/sangue , DNA/química , Técnicas Eletroquímicas , Entropia , Genes Virais , Humanos , Limite de Detecção , Luminescência , Conformação de Ácido Nucleico , Pandemias , Sensibilidade e Especificidade
6.
Biosens Bioelectron ; 172: 112724, 2021 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-33142197

RESUMO

The uneven morphology and the trapped charges at the surface of the traditionally used supporting substrate-based 2D biosensors produces a scattering effect, which leads to a irregular signals from individually fabricated devices. Though suspended 2D channel material has the potential to overcome scattering effects from the substrates but achieving reliability and selectivity, have been limiting the using of this biosensor technology. Here, we have demonstrated nanogap electrodes fabrication by using the self-assembly technique, which provides suspension to the 2D-MoS2. These nano-spacing electrodes not only give suspension but also provide robustness strength to the atomic layer, which remains freestanding after coating of the Hafnium oxide (HfO2) as well as linkers and antibodies. For evaluating the electrical characteristics of suspended MoS2 FET, gating potential was applied through an electrolyte on the suspended MoS2 transistor. This helped in achieved a lower subthreshold swing 70 mV/dec and ON/OFF ratio 107. Later, pH detection was conducted at room temperature, which showed an impressive sensitivity of ~880 by changing 1 unit of pH. We have also successfully shown Escherichia coli (E. coli) bacteria sensing from the suspended MoS2 transistor by functionalizing dielectric layer with E. coli antibodies. The reported biosensor has shown the ~9% of conductance changes with a lower concentration of E. coli (10 CFU/mL; colony-forming unit per mL) as well as maintain the constant sensitivity in three fabricated devices. The obtained enhancement in the sensitivity of devices and its effect on biomolecules detection can be extened to other biomolecules and this type of architecture has the potential to detect COVID-19 viruses based biomolecules.


Assuntos
Técnicas Biossensoriais/métodos , Teste para COVID-19/métodos , Dissulfetos , Molibdênio , Nanoestruturas/química , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19/diagnóstico , COVID-19/virologia , Teste para COVID-19/estatística & dados numéricos , Materiais Revestidos Biocompatíveis/química , Escherichia coli/química , Escherichia coli/isolamento & purificação , Humanos , Concentração de Íons de Hidrogênio , Microeletrodos , Microtecnologia , Reprodutibilidade dos Testes , SARS-CoV-2/química , SARS-CoV-2/isolamento & purificação , Sensibilidade e Especificidade , Eletricidade Estática , Volatilização
7.
Sensors (Basel) ; 20(23)2020 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-33256085

RESUMO

Timely detection and diagnosis are essentially needed to guide outbreak measures and infection control. It is vital to improve healthcare quality in public places, markets, schools and airports and provide useful insights into the technological environment and help researchers acknowledge the choices and gaps available in this field. In this narrative review, the detection of coronavirus disease 2019 (COVID-19) technologies is summarized and discussed with a comparison between them from several aspects to arrive at an accurate decision on the feasibility of applying the best of these techniques in the biosensors that operate using laser detection technology. The collection of data in this analysis was done by using six reliable academic databases, namely, Science Direct, IEEE Xplore, Scopus, Web of Science, Google Scholar and PubMed. This review includes an analysis review of three highlights: evaluating the hazard of pandemic COVID-19 transmission styles and comparing them with Severe Acute Respiratory Syndrome (SARS) and Middle East Respiratory Syndrome (MERS) to identify the main causes of the virus spreading, a critical analysis to diagnose coronavirus disease 2019 (COVID-19) based on artificial intelligence using CT scans and CXR images and types of biosensors. Finally, we select the best methods that can potentially stop the propagation of the coronavirus pandemic.


Assuntos
Técnicas Biossensoriais/métodos , Teste para COVID-19/métodos , COVID-19/diagnóstico , Animais , Inteligência Artificial , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19/transmissão , COVID-19/virologia , Teste para COVID-19/estatística & dados numéricos , Microbiologia Ambiental , Monitoramento Ambiental , Humanos , Pandemias , SARS-CoV-2/isolamento & purificação , Tomografia Computadorizada por Raios X/estatística & dados numéricos
8.
Biosens Bioelectron ; 166: 112437, 2020 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-32692666

RESUMO

The ongoing global pandemic (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has become a huge public health issue. Hence, we devised a multiplex reverse transcription loop-mediated isothermal amplification (mRT-LAMP) coupled with a nanoparticle-based lateral flow biosensor (LFB) assay (mRT-LAMP-LFB) for diagnosing COVID-19. Using two LAMP primer sets, the ORF1ab (opening reading frame 1a/b) and N (nucleoprotein) genes of SARS-CoV-2 were simultaneously amplified in a single-tube reaction, and detected with the diagnosis results easily interpreted by LFB. In presence of FITC (fluorescein)-/digoxin- and biotin-labeled primers, mRT-LAMP produced numerous FITC-/digoxin- and biotin-attached duplex amplicons, which were determined by LFB through immunoreactions (FITC/digoxin on the duplex and anti-FITC/digoxin on the test line of LFB) and biotin/treptavidin interaction (biotin on the duplex and strptavidin on the polymerase nanoparticle). The accumulation of nanoparticles leaded a characteristic crimson band, enabling multiplex analysis of ORF1ab and N gene without instrumentation. The limit of detection (LoD) of COVID-19 mRT-LAMP-LFB was 12 copies (for each detection target) per reaction, and no cross-reactivity was generated from non-SARS-CoV-2 templates. The analytical sensitivity of SARS-CoV-2 was 100% (33/33 oropharynx swab samples collected from COVID-19 patients), and the assay's specificity was also 100% (96/96 oropharynx swab samples collected from non-COVID-19 patients). The total diagnostic test can be completed within 1 h from sample collection to result interpretation. In sum, the COVID-19 mRT-LAMP-LFB assay is a promising tool for diagnosing SARS-CoV-2 infections in frontline public health field and clinical laboratories, especially from resource-poor regions.


Assuntos
Betacoronavirus/genética , Betacoronavirus/isolamento & purificação , Técnicas Biossensoriais , Técnicas de Laboratório Clínico , Infecções por Coronavirus/diagnóstico , Infecções por Coronavirus/virologia , Pandemias , Pneumonia Viral/diagnóstico , Pneumonia Viral/virologia , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/métodos , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19 , Teste para COVID-19 , China/epidemiologia , Técnicas de Laboratório Clínico/instrumentação , Técnicas de Laboratório Clínico/métodos , Técnicas de Laboratório Clínico/estatística & dados numéricos , Infecções por Coronavirus/epidemiologia , Desenho de Equipamento , Estudos de Viabilidade , Humanos , Limite de Detecção , Técnicas de Diagnóstico Molecular , Reação em Cadeia da Polimerase Multiplex/métodos , Reação em Cadeia da Polimerase Multiplex/estatística & dados numéricos , Nanopartículas , Nanotecnologia , Técnicas de Amplificação de Ácido Nucleico , Pneumonia Viral/epidemiologia , RNA Viral/análise , RNA Viral/genética , SARS-CoV-2 , Sensibilidade e Especificidade
9.
Biosens Bioelectron ; 164: 112316, 2020 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-32553350

RESUMO

Recent research suggests that SARS-CoV-2-infected individuals can be highly infectious while asymptomatic or pre-symptomatic, and that an infected person may infect 5.6 other individuals on average. This situation highlights the need for rapid, sensitive SARS-CoV-2 diagnostic assays capable of high-throughput operation that can preferably utilize existing equipment to facilitate broad, large-scale screening efforts. We have developed a CRISPR-based assay that can meet all these criteria. This assay utilizes a custom CRISPR Cas12a/gRNA complex and a fluorescent probe to detect target amplicons produced by standard RT-PCR or isothermal recombinase polymerase amplification (RPA), to allow sensitive detection at sites not equipped with real-time PCR systems required for qPCR diagnostics. We found this approach allowed sensitive and robust detection of SARS-CoV-2 positive samples, with a sample-to-answer time of ~50 min, and a limit of detection of 2 copies per sample. CRISPR assay diagnostic results obtained nasal swab samples of individuals with suspected COVID-19 cases were comparable to paired results from a CDC-approved quantitative RT-PCR (RT-qPCR) assay performed in a state testing lab, and superior to those produced by same assay in a clinical lab, where the RT-qPCR assay exhibited multiple invalid or inconclusive results. Our assay also demonstrated greater analytical sensitivity and more robust diagnostic performance than other recently reported CRISPR-based assays. Based on these findings, we believe that a CRISPR-based fluorescent application has potential to improve current COVID-19 screening efforts.


Assuntos
Betacoronavirus/isolamento & purificação , Sistemas CRISPR-Cas , Infecções por Coronavirus/diagnóstico , Pneumonia Viral/diagnóstico , Sequência de Bases , Betacoronavirus/genética , Técnicas Biossensoriais/métodos , Técnicas Biossensoriais/estatística & dados numéricos , COVID-19 , Infecções por Coronavirus/virologia , Corantes Fluorescentes , Genes Virais , Sequenciamento de Nucleotídeos em Larga Escala/métodos , Sequenciamento de Nucleotídeos em Larga Escala/estatística & dados numéricos , Humanos , Técnicas de Amplificação de Ácido Nucleico/métodos , Técnicas de Amplificação de Ácido Nucleico/estatística & dados numéricos , Pandemias , Pneumonia Viral/virologia , Valor Preditivo dos Testes , RNA Viral/análise , RNA Viral/genética , Reprodutibilidade dos Testes , Reação em Cadeia da Polimerase Via Transcriptase Reversa/métodos , Reação em Cadeia da Polimerase Via Transcriptase Reversa/estatística & dados numéricos , SARS-CoV-2 , Sensibilidade e Especificidade
10.
Nat Commun ; 11(1): 975, 2020 02 20.
Artigo em Inglês | MEDLINE | ID: mdl-32080202

RESUMO

The reliable detection of environmental molecules in the presence of noise is an important cellular function, yet the underlying computational mechanisms are not well understood. We introduce a model of two interacting sensors which allows for the principled exploration of signal statistics, cooperation strategies and the role of energy consumption in optimal sensing, quantified through the mutual information between the signal and the sensors. Here we report that in general the optimal sensing strategy depends both on the noise level and the statistics of the signals. For joint, correlated signals, energy consuming (nonequilibrium), asymmetric couplings result in maximum information gain in the low-noise, high-signal-correlation limit. Surprisingly we also find that energy consumption is not always required for optimal sensing. We generalise our model to incorporate time integration of the sensor state by a population of readout molecules, and demonstrate that sensor interaction and energy consumption remain important for optimal sensing.


Assuntos
Técnicas Biossensoriais/métodos , Fenômenos Biofísicos , Técnicas Biossensoriais/estatística & dados numéricos , Bioestatística , Células/metabolismo , Células Quimiorreceptoras/metabolismo , Metabolismo Energético , Regulação da Expressão Gênica , Modelos Biológicos , Transdução de Sinais , Razão Sinal-Ruído
11.
ACS Synth Biol ; 9(3): 576-589, 2020 03 20.
Artigo em Inglês | MEDLINE | ID: mdl-32023410

RESUMO

Whole cell biosensors are genetic systems that link the presence of a chemical, or other stimulus, to a user-defined gene expression output for applications in sensing and control. However, the gene expression level of biosensor regulatory components required for optimal performance is nonintuitive, and classical iterative approaches do not efficiently explore multidimensional experimental space. To overcome these challenges, we used a design of experiments (DoE) methodology to efficiently map gene expression levels and provide biosensors with enhanced performance. This methodology was applied to two biosensors that respond to catabolic breakdown products of lignin biomass, protocatechuic acid and ferulic acid. Utilizing DoE we systematically modified biosensor dose-response behavior by increasing the maximum signal output (up to 30-fold increase), improving dynamic range (>500-fold), expanding the sensing range (∼4-orders of magnitude), increasing sensitivity (by >1500-fold), and modulated the slope of the curve to afford biosensors designs with both digital and analogue dose-response behavior. This DoE method shows promise for the optimization of regulatory systems and metabolic pathways constructed from novel, poorly characterized parts.


Assuntos
Técnicas Biossensoriais/métodos , Modelos Estatísticos , Técnicas Biossensoriais/estatística & dados numéricos , Ácidos Cumáricos/metabolismo , Relação Dose-Resposta a Droga , Escherichia coli/genética , Dosagem de Genes , Expressão Gênica , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Hidroxibenzoatos/metabolismo , Lignina/metabolismo , Regiões Promotoras Genéticas , Sensibilidade e Especificidade
12.
Bull Math Biol ; 82(2): 25, 2020 01 28.
Artigo em Inglês | MEDLINE | ID: mdl-31993762

RESUMO

Biological sensors must often predict their input while operating under metabolic constraints. However, determining whether or not a particular sensor is evolved or designed to be accurate and efficient is challenging. This arises partly from the functional constraints being at cross purposes and partly since quantifying the prediction performance of even in silico sensors can require prohibitively long simulations, especially when highly complex environments drive sensors out of equilibrium. To circumvent these difficulties, we develop new expressions for the prediction accuracy and thermodynamic costs of the broad class of conditionally Markovian sensors subject to complex, correlated (unifilar hidden semi-Markov) environmental inputs in nonequilibrium steady state. Predictive metrics include the instantaneous memory and the total predictable information (the mutual information between present sensor state and input future), while dissipation metrics include power extracted from the environment and the nonpredictive information rate. Success in deriving these formulae relies on identifying the environment's causal states, the input's minimal sufficient statistics for prediction. Using these formulae, we study large random channels and the simplest nontrivial biological sensor model-that of a Hill molecule, characterized by the number of ligands that bind simultaneously-the sensor's cooperativity. We find that the seemingly impoverished Hill molecule can capture an order of magnitude more predictable information than large random channels.


Assuntos
Modelos Biológicos , Técnicas Biossensoriais/estatística & dados numéricos , Biologia Computacional , Simulação por Computador , Canais Iônicos/metabolismo , Cinética , Cadeias de Markov , Conceitos Matemáticos , Biologia Sintética , Biologia de Sistemas , Termodinâmica
13.
Diabetes Res Clin Pract ; 159: 107989, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-31866529
14.
PLoS One ; 14(9): e0222144, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31553730

RESUMO

Dengue virus (DENV) nonstructural 1 (NS1) protein is a specific and sensitive biomarker for the diagnosis of dengue. In this study, an efficient electrochemical biosensor that uses chemically modified affinity peptides was developed for the detection of dengue virus NS1. A series of amino acid-substituted synthetic peptides was rationally designed, chemically synthesized and covalently immobilized to a gold sensor surface. The sensor performance was monitored via square wave voltammetry (SWV) and electrochemical impedance spectroscopy (EIS). Potential affinity peptides specific for NS1 were chosen according to the dynamic current decrease in SWV experiments. Using circular dichroism, the molar ellipticity of peptides (DGV BP1-BP5) was determined, indicating that they had a mostly similar in random coil structure, not totally identical. Using SWV, DGV BP1 was selected as a promising recognition peptide and limit of detection for NS1 was found to be 1.49 µg/mL by the 3-sigma rule. DGV BP1 showed good specificity and stability for NS1, with low signal interference. The validation of the sensor to detect NS1 proteins was confirmed with four dengue virus culture broth (from serotype 1 to 4) as proof-of-concept. The detection performance of our sensor incorporating DGV BP1 peptides showed a statistically significant difference. These results indicate that this strategy can potentially be used to detect the dengue virus antigen, NS1, and to diagnosis dengue fever within a miniaturized portable device in point-of-care testing.


Assuntos
Técnicas Biossensoriais/métodos , Vírus da Dengue/isolamento & purificação , Dengue/diagnóstico , Dengue/virologia , Proteínas não Estruturais Virais/análise , Substituição de Aminoácidos , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/estatística & dados numéricos , Vírus da Dengue/química , Espectroscopia Dielétrica , Glicoproteínas/análise , Humanos , Proteínas Imobilizadas/síntese química , Proteínas Imobilizadas/química , Limite de Detecção , Peptídeos/síntese química , Peptídeos/química
15.
Math Biosci Eng ; 16(5): 4873-4884, 2019 05 29.
Artigo em Inglês | MEDLINE | ID: mdl-31499694

RESUMO

The measurement of biological fluid uptake into a scaffold sensor has been modeled by measuring the response of induced high-frequency temperature pulses. For this, a heat transport equation is used, developed from Extended Thermodynamics, also equivalent to Cattaneo's equation, as well as an effective thermal conductivity. The effective thermal conductivity is experimentally validated against data measurements of a carbon nanotube porous nanocomposite, embedded with silica nanoparticles. This nanocomposite serves also as the case study for the scaffold sensor. The uptake of the biological fluid in this scaffold sensor is equivalent to a change in the effective thermal conductivity, monitored by an increase of the interstitial volume fraction. By imposing a high-frequency temperature oscillation, the temperature response at the other end of the porous medium is calculated. Depending on the ratio of the relaxation time and the thermal diffusion time, the temperature response can be of oscillatory nature or of an exponential growth to an asymptotic limit. It is observed that an observed phase lag in the temperature response indicates a change in the effective thermal conductivity and thus is a criterion denoting the amount of uptake.


Assuntos
Líquidos Corporais/metabolismo , Nanocompostos , Transporte Biológico , Técnicas Biossensoriais/métodos , Técnicas Biossensoriais/estatística & dados numéricos , Temperatura Alta , Humanos , Conceitos Matemáticos , Modelos Biológicos , Nanocompostos/química , Nanocompostos/estatística & dados numéricos , Nanotubos de Carbono/química , Nanotubos de Carbono/estatística & dados numéricos , Porosidade , Dióxido de Silício/química , Condutividade Térmica , Termodinâmica
16.
Am J Hum Biol ; 31(6): e23298, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-31334897

RESUMO

OBJECTIVES: A handheld biosensor for measuring salivary α-amylase (sAA) was developed for convenient on-site measurement. Previous studies reported some discrepancies in sAA levels measured with a biosensor and a standard assay. This study aimed to compare sAA levels measured with three different methods and the factors affecting its levels. METHODS: Thirty-eight participants collected saliva two times for three measurements. First, the collector strip was placed under the tongue for 2 minutes, then the strip was used to measure sAA level on-site immediately (intraoral biosensor; method 1). Then, a participant pooled the saliva for 4 minutes and collected the saliva into the tube which was aliquoted to measure in a laboratory with a handheld biosensor (extraoral biosensor; method 2) and with a standard enzyme kinetic assay (EKA; method 3). Additional experiments were carried out to compare the levels of sAA measured with differences in pooling time and positioning of the collector strip. RESULTS: A high correlation of sAA levels between an extraoral and an EKA measurement (r = 0.989) was observed, while sAA levels measured with an intraoral method showed a significant but weaker correlation with either an EKA (r = 0.475) or an extraoral method (r = 0.436). Saliva pooling time and positioning of the collector strip significantly affected sAA levels. CONCLUSIONS: A handheld biosensor is valid to measure sAA levels extraorally. For an intraoral measurement, pooling time and positioning of the collector strip need to be taken into account.


Assuntos
Bioensaio/métodos , Técnicas Biossensoriais/métodos , Saliva/química , alfa-Amilases Salivares/metabolismo , Adulto , Bioensaio/estatística & dados numéricos , Técnicas Biossensoriais/estatística & dados numéricos , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Adulto Jovem
17.
Analyst ; 144(17): 5223-5231, 2019 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-31360940

RESUMO

Reagent sensors in diagnostic assays are used in medical laboratories to obtain patient results. However, interference during the analysis of blood samples is a constant problem with reagent sensors and leads to inaccurate results. Interference in blood analysis is frequently caused by hemolysis and icterus. This study analyzed the effects of interferents on reagent sensors and devised a method to improve the measurement accuracy using an interference index detection (IID) system to minimize the interference effect. The IID system can be easily applied using only two wells and an optical component for sample measurement. After applying the IID system, the interference rates from bilirubin and hemoglobin improved dramatically. A comparison of results obtained for clinical samples showed that the IID system had a positive effect on the accuracy.


Assuntos
Técnicas Biossensoriais/métodos , Análise Química do Sangue/métodos , Confiabilidade dos Dados , Hemólise , Icterícia , Bilirrubina/sangue , Bilirrubina/química , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/estatística & dados numéricos , Análise Química do Sangue/instrumentação , Análise Química do Sangue/estatística & dados numéricos , Nitrogênio da Ureia Sanguínea , Cloretos/sangue , Hemoglobinas/análise , Hemoglobinas/química , Humanos , Análise de Regressão , gama-Glutamiltransferase/sangue
18.
PLoS One ; 14(4): e0214878, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30958871

RESUMO

Data analysis for flow-based in-vitro receptomics array, like a tongue-on-a-chip, is complicated by the relatively large variability within and between arrays, transfected DNA types, spots, and cells within spots. Simply averaging responses of spots of the same type would lead to high variances and low statistical power. This paper presents an approach based on linear mixed models, allowing a quantitative and robust comparison of complex samples and indicating which receptors are responsible for any differences. These models are easily extended to take into account additional effects such as the build-up of cell stress and to combine data from replicated experiments. The increased analytical power this brings to receptomics research is discussed.


Assuntos
Dispositivos Lab-On-A-Chip/estatística & dados numéricos , Técnicas Analíticas Microfluídicas/estatística & dados numéricos , Receptores Acoplados a Proteínas G/metabolismo , Técnicas Biossensoriais/estatística & dados numéricos , Humanos , Modelos Lineares , Modelos Estatísticos , Receptores Acoplados a Proteínas G/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Papilas Gustativas/metabolismo
19.
PLoS One ; 14(1): e0210288, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30605486

RESUMO

BACKGROUND: Obesity among children is an alarming issue due to an increased incidence over the last years with devastating physiological and psychological consequences. Current available medical diagnostic tools use invasive methods to evaluate and monitor the lipid profile, glycaemia or liver status for determining the overweight/ obesity complications. The standard methods proposed for the assay of IL6 and leptin from saliva cannot detect these two biomarkers in children saliva; the levels of IL6 and leptin in children's saliva are lower than the limit of determination of the standard methods. Therefore, we proposed a method based on utilization of stochastic sensors, able to simultaneously perform a qualitative and quantitative determination of these two biomarkers within minutes, in the range able to cover healthy and obese children. METHODS: Children from the urban area monitored for annual standard analyses and health status assessment at National Institute of Endocrinology C.I. Parhon within University of Medicine and Pharmacy "Carol Davila", Bucharest, Romania were included in the study. In the same day, for all participants of the study, blood analyses were performed and saliva samples were collected for the determination of the IL-6 and leptin levels. FINDINGS/ RESULTS: The children diagnosed with overweight/ obesity presented not significantly different blood lipid profile and glycaemia comparing to the control group. Only few cases of the children presented high levels of cholesterol, low level of HDL-cholesterol, a slightly increased level of triglycerides and transaminases. No correlation with the body mass index could be established with the blood analyses results. In case of the overweight/obese children, the salivary level of the proinflammatory citokynes IL-6 (41ng/mL±21) and leptin (40.4ng/mL±28.8), were significantly increased comparing to normal weight children (IL-6 8.1±4.6, leptin 9.58±3.1). Moreover, the saliva level of the IL-6 was positively correlated with the body mass index. Salivary leptin level was highly variable in case of obese children, 6 patients presenting similar levels with the control group. CONCLUSIONS: Increased levels of salivary IL-6 and leptin sustain a systemic inflammation status despite normal range of standard blood analyses. The results were positively correlated in case of IL-6 with the body mass index the general accepted method used for the assessment of the obesity or overweight degree The determination of these markers in saliva samples by a stochastic method proved the utility within the medical examination for a better evaluation of the health status in obesity. The method has some advantages like: easy collection of the biological sample, fast determination of low concentrations and could be promising in case of no associated oral cavity infections or inflammations which could interfere the results.


Assuntos
Interleucina-6/metabolismo , Leptina/metabolismo , Obesidade Infantil/metabolismo , Saliva/metabolismo , Adolescente , Biomarcadores/análise , Biomarcadores/metabolismo , Técnicas Biossensoriais/instrumentação , Técnicas Biossensoriais/métodos , Técnicas Biossensoriais/estatística & dados numéricos , Glicemia/metabolismo , Índice de Massa Corporal , Estudos de Casos e Controles , Criança , Pré-Escolar , Colesterol/sangue , HDL-Colesterol/sangue , Feminino , Humanos , Mediadores da Inflamação/análise , Mediadores da Inflamação/metabolismo , Interleucina-6/análise , Leptina/análise , Masculino , Obesidade Infantil/sangue , Obesidade Infantil/patologia , Romênia , Saliva/química , Processos Estocásticos , Triglicerídeos/sangue
20.
Vet J ; 239: 21-29, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-30197105

RESUMO

Precision medicine can be defined as the prevention, investigation and treatment of diseases taking individual variability into account. There are multiple ways in which the field of precision medicine may be advanced; however, recent innovations in the fields of electronics and microfabrication techniques have led to an increased interest in the use of implantable biosensors in precision medicine. Implantable biosensors are an important class of biosensors because of their ability to provide continuous data on the levels of a target analyte; this enables trends and changes in analyte levels over time to be monitored without any need for intervention from either the patient or clinician. As such, implantable biosensors have great potential in the diagnosis, monitoring, management and treatment of a variety of disease conditions. In this review, we describe precision medicine and the role implantable biosensors may have in this field, along with challenges in their clinical implementation due to the host immune responses they elicit within the body.


Assuntos
Técnicas Biossensoriais/veterinária , Medicina de Precisão/veterinária , Próteses e Implantes/veterinária , Medicina Veterinária/métodos , Animais , Técnicas Biossensoriais/estatística & dados numéricos , Medicina de Precisão/instrumentação , Medicina de Precisão/métodos , Próteses e Implantes/estatística & dados numéricos , Medicina Veterinária/instrumentação
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