Extensive sampling and citizen science expand the distribution of the threatened freshwater turtle Ranacephala hogei (Mertens, 1967).

Ranacephala hogei is a South American freshwater turtle considered one of the 25 most endangered chelonian species in the world. Endemic to the Atlantic Forest hotspot of southeastern Brazil, the conservation status of R. hogei is subject to continuous assessment at various levels. However, the scarcity of data regarding this species, particularly its geographic range, challenges these evaluations. In an effort to address these gaps, we conducted a comprehensive long-term inventory using different methods to study this species. Our efforts resulted in a 144% increase in documented occurrence points, including a new hydrographic basin and protected areas. By combining historical and current records, we have observed the persistence of R. hogei in rural areas, even in locations where its extinction was previously predicted. Consequently, our data significantly contribute to supporting future conservation assessments.

A novel approach to urban turtle sampling: Assessing Hookless Fishing with clip and two conventional methods.

To address urban turtle sampling challenges, we presented Hookless fishing with clip, a cost-effective method for sampling this important group. Effectiveness, biases and potential advantages were analysed in comparison to two commonly used methods (funnel trap and hand capture). Fieldwork was conducted between August and November/2021 in four areas in Brazil, using the three methods simultaneously. A total of 195 turtles from four species (Phrynops geoffroanus, Hydromedusa tectifera, Trachemys dorbigni and T. scripta elegans) were captured. Funnel trap demonstrate a significantly higher capture than hand capture, while Hookless fishing showed no significant difference in captures compared to funnel trap. The highest catch per unit effort values were observed for the new method (0.37) and the funnel trap (0.34). Despite being widely used, funnel traps were the only method to exhibit male bias. Our findings revealed that Hookless fishing with clip exhibited remarkable capture efficiency, cost-effectiveness, and ease of transport and utilization; however, it requires operator presence. Nevertheless, the proposed method, both as the primary or auxiliary approach, appears efficient in enhancing captures and reducing costs and risks. This innovative method has the potential to assist researchers studying omnivorous and carnivores freshwater turtles in environments worldwide, especially in human settlements.

Diversity and biogeography of South American mud turtles elucidated by multilocus DNA sequencing (Testudines: Kinosternidae).

Kinosternon is the most speciose genus of extant turtles, with 22 currently recognized species, distributed across large parts of the Americas. Most species have small distributions, but K. leucostomum and K. scorpioides range from Mexico to South America. Previous studies have found discordance between mitochondrial and nuclear phylogenies in some kinosternid groups, with the current taxonomy following the nuclear-based results. Herein, based on extended molecular, geographic, and taxonomic sampling, we explore the phylogeographic structure and taxonomic limits for K. leucostomum and the K. scorpioides group and present a fossil-calibrated nuclear time tree for Kinosternon. Our results reveal contrasting differentiation patterns for the K. scorpioides group and K. leucostomum, despite overlapping distributions. Kinosternon leucostomum shows only shallow geographic divergence, whereas the K. scorpioides group is polyphyletic with up to 10 distinct taxa, some of them undescribed. We support the elevation of K. s. albogulare and K. s. cruentatum to species level. Given the deep divergence within the genus Kinosternon, we propose the recognition of three subgenera, Kinosternon, Cryptochelys and Thyrosternum, and the abandonment of the group-based classification, at least for the K. leucostomum and K. scorpioides groups. Our results show an initial split in Kinosternon that gave rise to two main radiations, one Nearctic and one mainly Neotropical. Most speciation events in Kinosternon occurred during the Quaternary and we hypothesize that they were mediated by both climatic and geological events. Additionally, our data imply that at least three South American colonizations occurred, two in the K. leucostomum group, and one in the K. scorpioides group. Additionally, we hypothesize that discordance between mitochondrial and nuclear phylogenetic signal is due to mitochondrial capture from an extinct kinosternine lineage.

Sexual dimorphism and morphometrics in two populations of the neotropical freshwater turtle Mesoclemmys vanderhaegei (Testudines, Chelidae) / Dimorfismo sexual e morfometria em duas populações do quelônio aquático neotropical Mesoclemmys vanderhaegei (Testudines, Chelidae)

As commonly observed in turtles, sexual size dimorphism (SSD) is pronounced in the Neotropical freshwater turtle Mesoclemmys vanderhaegei (Bour, 1973), a species in which females are usually larger than males. We studied SSD in two populations of M. vanderhaegei from the Brazilian Cerrado savannah, based on 245 specimens captured between November 2010 and August 2013. The carapace length of the largest male was 201 mm (9.15% shorter than that of the largest female, 220 mm). The mean sizes of males and females did not differ in the two populations. However, a comparison of eight selected morphological variables revealed that the size distribution pattern differed between the populations. Using model selection, seven out of 34 morphometric variables - from the head, plastron, bridge, and tail - were selected as the most suitable ones to distinguish between males and females. The pattern of SSD found in M. vanderhaegei is similar to that found in other chelonian species and may be the result of natural selection rather than ecological factors, since individuals of both sexes use the same habitats.

Como comumente observado em quelônios, dimorfismo sexual em tamanho (SSD) é pronunciado em Mesoclemmys vanderhaegei (Bour, 1973), uma espécie de quelônio Neotropical de água doce onde as fêmeas são geralmente maiores que os machos. Nós estudamos SSD em duas populações de M. vanderhaegei no Cerrado brasileiro, com base em 245 espécimes capturados entre novembro de 2010 e agosto de 2013. O comprimento da carapaça do maior macho foi de 201 mm (9,15% menor que o comprimento da maior fêmea, 220 mm). Os tamanhos médios de fêmeas e machos não diferiram nas duas populações. No entanto, uma comparação de oito variáveis morfológicas revelou que o padrão de distribuição de tamanhos diferiu entre as populações. Usando a seleção de modelos, sete das 34 variáveis morfométricas - incluindo medidas da cabeça, plastrão, ponte e cauda - foram selecionadas como as mais adequadas para distinguir fêmeas e machos. O padrão de SSD encontrado em M. vanderhaegei é similar ao encontrado em outras espécies de quelônios e pode ser o resultado de seleção natural ao invés de fatores ecológicos, uma vez que indivíduos de ambos os sexos usam os mesmos habitats.

"Ancient DNA" reveals that the scientific name for an extinct tortoise from Cape Verde refers to an extant South American species.

We examined the type material of the extinct tortoise species Geochelone atlantica López-Jurado, Mateo and García-Márquez, 1998 from Sal Island, Cape Verde, using aDNA approaches and AMS radiocarbon dating. High-quality mitochondrial genomes obtained from the three type specimens support that all type material belongs to the same individual. In phylogenetic analyses using mitochondrial genomes of all species groups and genera of extant and some recently extinct tortoises, the type material clusters within the extant South American red-footed tortoise Chelonoidis carbonarius (Spix, 1824). Our radiocarbon date indicates that the tortoise from which the type series of G. atlantica originates was still alive during 1962 and 1974. These results provide firm evidence that the type material of G. atlantica does not belong to the Quaternary tortoise bones excavated on Sal Island in the 1930s, as originally thought. Thus, the extinct tortoise species remains unstudied and lacks a scientific name, and the name G. atlantica has to be relegated into the synonymy of C. carbonarius. The circumstances that led to this confusion currently cannot be disentangled.

Ecology and genetic identification of freshwater turtles in Pakistan

The turtle population plays an important role in sustaining the water ecosystem by minimizing pollution from water. The identification and molecular investigation of freshwater fauna is essential for conservation of the species that are near to extinction. The quality of water, type of flora, fauna, and environmental condition are the major factors that directly affect the distribution of freshwater turtles. Two families including eight species of freshwater turtles are found in Pakistan. The Geoemydidae (Geoclemys hamiltonii, Hardella thurjii, Pangshura smithii, and Pangshura tecta) and Trionychidae (Chitra indica, Nilssonia gangetica, Nilssonia hurum, and Lissemys punctata andersoni). Studies on the species diversity and habitat of freshwater turtle have not been focused previously in the region. The present study was the first conducted to estimate the habitat and genetic diversity of freshwater turtles using 12S rRNA (ribosomal RNA) gene in Pakistan. A total of 26 samples were collected from various localities using hand net, cast net, gills net, steel hooks, thick chemical wire, using chicken intestine and small fishes. The collected turtle specimens were morpho-taxonomically categorized into two genera, Lissemys punctata andersoni (n=13, 50%) and Nilssonia gangetica (n=13, 50%). The collected species showed an aggressive and active behavior in captivity during summer. Genomic DNA was extracted from collected specimens and used in PCR reaction by using specific primers for the amplification of short fragments of 12S rRNA gene. Analysis of generated sequences confirmed the existence of L. p. andersoni in the region. The generated sequences of L. p. andersoni correspond to Clad A and showed a close resemblance among different species of the genus Lissemys. The climatic change such as temperature and rainfall have great effects on the occurrence of turtles. Habitat degradation occurred due to various factors such as draining wetlands, deforestation, converting clear water rivers to stagnant multi-purpose reservoirs and mortality on roads when turtles move around to feed. Current study concluded that the freshwater turtles L. p. andersoni and N. gangetica are interested in natural feeds. The analysis of 359 bp of 12S rRNA gene of the genus Lissemys turtles showed relationships of these turtles with cyclanorbines flap shell turtles, which agrees with previous reports. The African taxa are paraphyletic with respect to the Asian Lissemys. The ancestors of the extant genus cyclanorbines spread from North America to Asia [26]. It should be expected that each of the 3 taxa, L. p. andersoni, L. p. punctata and L. scutata represents a distinct genetic lineage. Present molecular investigation concluded that Clad A comprising L. p. punctata, L. scutata, L. cylonensis also include L. p. andersoni species. Clad B also contains one sequence from India, identified as L. p. andersoni. Their classification as conspecific evolutionary lineages are suggested by similar genetic divergences, the observation of mismatches between morphology (spotted vs. unspotted) and mitochondrial haplotypes in clades A and B. The clades A and B provides evidence for gene flow between the spotted subspecies L. p. andersoni and adjacent populations with unspotted flap shell turtles. This study is the first investigation about the habitat and of the endemic turtle species L. p. andersoni and N. gangetica in Pakistan. The genetic identification followed by phylogenetic analysis based on 12S rRNA partial genes revealed a closest similarity with the sequences generated for the same species from the neighboring countries. This study provided information to conduct further molecular studies that are essential to provide significant genetic data about turtle species.(AU)

Venous blood gas and biochemical analysis of wild captured green turtles (Chelonia mydas) and Kemp's ridley turtles (Lepidochelys kempii) from the Gulf of Mexico.

Blood was collected from wild captured green and Kemp's ridley turtles off the west coast of Florida, USA. Blood gases and biochemical values were analyzed using a point of care (POC) device in the field. Analytes include pH, partial pressure of carbon dioxide (pCO2), partial pressure of oxygen (pO2), total carbon dioxide (TCO2), bicarbonate (HCO3), base excess (BE), oxygen saturation (sO2), lactate, sodium (Na), potassium (K), chloride (Cl), total carbon dioxide (TCO2), anion gap, ionized calcium, glucose, blood urea nitrogen (BUN), creatinine (Crea), hematocrit (Hct), and hemoglobin (Hb). These are novel data for wild healthy Kemp's ridley turtles, and results for green turtles were generally consistent with past studies of green turtles with exceptions primarily in blood gas values. Ninety percent of the green turtles had fibropapillomatosis (FP), but none of the blood analytes were correlated with disease severity. Only BUN was correlated with weight of green turtles, and there was no correlation between blood parameters and weight of Kemp's ridley turtles. This study provides data that are useful in understanding the physiologic status of sea turtles specific to this region, allowing for comparisons to other populations, life stages, and disease states.

Scutation asymmetries in red-footed tortoise Chelonoidis carbonaria Spix, 1824 (Testudines: Testudinidae)

The ability of an individual to withstand random perturbations during its development is considered a good indicator of environmental and genetic stress. A common means of assessing developmental stability is through analysis of fluctuating asymmetry (FA) in bilateral traits. Tortoises, with their large, solid plastron, allow for measurement of body geometry. Their bilateral shell scutes are ideal candidates for asymmetries researches. With this issue in mind we assessed, as a preliminary study, levels of plastron scute asymmetry in a sample of 46 red-footed tortoise Chelonoidis carbonaria from Arauca, N Colombia. We found significative fluctuating asymmetry (FA) but no directional asymmetry, the former not increasing with carapace size and thus indicating that tortoise shells do not become increasingly asymmetrical with age, or in other words, signaling that FA is not being influenced by pholidosis (variability of scale cover mosaic according to the development of the scutes). Asymmetry in plastron shape, although not necessarily apparent at first glance, varied, with gender with males exhibiting higher levels of FA than females. Although we can not identify the potential sources of variation responsible for the observed patterns of developmental instability, we consider this detected form of asymmetry due to unfavorable environmental conditions.(AU)

New Genetic Insights About Hybridization and Population Structure of Hawksbill and Loggerhead Turtles From Brazil.

An extremely high incidence of hybridization among sea turtles is found along the Brazilian coast. This atypical phenomenon and its impact on sea turtle conservation can be elucidated through research focused on the evolutionary history of sea turtles. We assessed high-quality multilocus haplotypes of 143 samples of the 5 species of sea turtles that occur along the Brazilian coast to investigate the hybridization process and the population structure of hawksbill (Eretmochelys imbricata) and loggerhead turtles (Caretta caretta). The multilocus data were initially used to characterize interspecific hybrids. Introgression (F2 hybrids) was only confirmed in hatchlings of F1 hybrid females (hawksbill × loggerhead), indicating that introgression was either previously overestimated and F2 hybrids may not survive to adulthood, or the first-generation hybrid females nesting in Brazil were born as recent as few decades ago. Phylogenetic analyses using nuclear markers recovered the mtDNA-based Indo-Pacific and Atlantic lineages for hawksbill turtles, demonstrating a deep genetic divergence dating from the early Pliocene. In addition, loggerhead turtles that share a common feeding area and belong to distinct Indo-Pacific and Atlantic mtDNA clades present no clear genetic differentiation at the nuclear level. Finally, our results indicate that hawksbill and loggerhead rookeries along the Brazilian coast are likely connected by male-mediated gene flow.

Non-Avian Reptiles of the state of Rio de Janeiro, Brazil: status of knowledge and commented list

We assessed the current knowledge on non-avian reptile species composition in the state of Rio de Janeiro (RJ), southeastern Brazil. We used published data in indexed journals and verified voucher specimens housed in the herpetological collections of the Museu Nacional (UFRJ), and the Laboratory of Reptiles (ZUFRJ). We also confirmed vouchers from Instituto Vital Brazil (IVB) and from the Museum of Comparative Zoology (MCZ). We compiled a list containing 149 species of reptiles, distributed among Testudines (N = 15), Crocodylia (N = 1) and Squamata (N = 133; six amphisbaenians, 38 lizards and 89 snakes). Our results add 20 species to the previous list known for the state. Four species recorded are endemic to the state of Rio de Janeiro (Anolis neglectus, Glaucomastix littoralis, Leposternon scutigerum, and Liolaemus lutzae). We identified that 21 reptile species recorded in RJ state (nearly 15% of the total) are included in some threat category either in the IUCN, Brazilian (ICMBio) or state lists of endangered species. We also report that seven of the reptiles recorded are non-indigenous to the state: Cnemidophorus aff. lemniscatus (= Cnemidophorus cryptus), Anolis sagrei, Trachemys scripta, Trachemys dorbigni, Hemidactylus mabouia, Crotalus durissus terrificus, and Rhinoclemmys punctularia. The checklist presented here provides a comprehensive database for further research on the herpetofauna of the Brazilian Atlantic Forest.(AU)

Genomic analyses reveal two species of the matamata (Testudines: Chelidae: Chelus spp.) and clarify their phylogeography.

The matamata is one of the most charismatic turtles on earth, widely distributed in northern South America. Debates have occurred over whether or not there should be two subspecies or species recognized due to its geographic variation in morphology. Even though the matamata is universally known, its natural history, conservation status and biogeography are largely unexplored. In this study we examined the phylogeographic differentiation of the matamata based on three mitochondrial DNA fragments (2168 bp of the control region, cytochrome oxidase subunit I, and the cytochrome b gene), one nuclear genomic DNA fragment (1068 bp of the R35 intron) and 1661 Single Nucleotide Polymorphisms (SNPs). Our molecular and morphological analyses revealed the existence of two distinct, genetically deeply divergent evolutionary lineages of matamatas that separated in the late Miocene (approximately 12.7 million years ago), corresponding well to the time when the Orinoco Basin was established. As a result of our analyses, we describe the genetically and morphologically highly distinct matamata from the Orinoco and Río Negro Basins and the Essequibo drainage as a species new to science (Chelus orinocensis sp. nov.). Chelus fimbriata sensu stricto is distributed in the Amazon Basin and the Mahury drainage. Additionally, the analyses revealed that each species displays phylogeographic differentiation. For C. orinocensis, there is moderate mitochondrial differentiation between the Orinoco and the Río Negro. For C. fimbriata, there is more pronounced differentiation matching different river systems. One mitochondrial clade was identified from the Amazon, Ucayali, and Mahury Rivers, and another one from the Madeira and Jaci Paraná Rivers. The C. orinocensis in the Essequibo and Branco Rivers have haplotypes that constitute a third clade clustering with C. fimbriata. Phylogenetic analyses of the R35 intron and SNP data link the matamatas from the Essequibo and Branco with the new species, suggesting past gene flow and old mitochondrial introgression. Chelus orinocensis is collected for the pet trade in Colombia and Venezuela. However, neither the extent of the harvest nor its impact are known. Hence, it is crucial to gather more information and to assess its exploitation throughout its distribution range to obtain a better understanding of its conservation status and to design appropriate conservation and management procedures. RESUMEN: La matamata es una de las tortugas más carismáticas del mundo, ampliamente distribuida en el norte de Sudamérica. Debido a su variación morfológica geográfica, se debate sobre el reconocimiento de dos subespecies o especies. A pesar de que la matamata es universalmente conocida, su historia natural, estado de conservación y biogeografía han sido muy poco estudiados. En este estudio examinamos la diferenciación filogeográfica de las matamatas en base ​​a tres fragmentos de ADN mitocondrial (2168 pb de la región de control, la subunidad I del citocromo oxidasa y el gen del citocromo b), un fragmento de ADN genómico nuclear (1068 pb del intrón R35) y 1661 polimorfismos de nucleótido único (SNPs). Nuestros análisis moleculares y morfológicos revelaron la existencia de dos linajes evolutivos distintos de matamatas, genéticamente divergentes que se separaron en el Mioceno tardio (hace aproximadamente 12.7 millones de años), correspondiendo al tiempo en que se estableció la cuenca del Orinoco. Como resultado de nuestros análisis, describimos las genéticamente y morfológicamente distintas matamatas de las cuencas del Orinoco, Río Negro y Essequibo como una especie nueva para la ciencia (Chelus orinocensis sp. nov.). Chelus fimbriata sensu stricto se distribuye en la cuenca del Amazonas y en el drenaje del Mahury. Adicionalmente, los análisis revelaron que cada especie muestra diferenciación filogeográfica. Para C. orinocensis, hay una moderada diferenciación mitocondrial entre el Orinoco y el Río Negro. Para C. fimbriata, hay una diferenciación más pronunciada, concordando con los diferentes sistemas fluviales. Se identificó un clado de los ríos Amazonas, Ucayali y Mahury y otro de los ríos Madeira y Jaci Paraná. Las C. orinocensis de los ríos Essequibo y Branco tienen haplotipos que constituyen un tercer clado que se agrupa con C. fimbriata. Los análisis filogenéticos del intrón R35 y los datos de SNP asocian las matamatas de Essequibo y Branco con la nueva especie, sugiriendo flujo de genes pasado ​​e introgresión mitocondrial antigua. Chelus orinocensis se colecta para el comercio de mascotas en Colombia y Venezuela. Sin embargo, ni se conoce el alcance de las colectas ni su impacto. Por lo tanto, es crucial recopilar más información y evaluar su explotación en todo su rango de distribución, comprender mejor su estado de conservación y para diseñar acciones apropiadas de conservación y manejo.

Non-Avian Reptiles of the state of Rio de Janeiro, Brazil: status of knowledge and commented list

We assessed the current knowledge on non-avian reptile species composition in the state of Rio de Janeiro (RJ), southeastern Brazil. We used published data in indexed journals and verified voucher specimens housed in the herpetological collections of the Museu Nacional (UFRJ), and the Laboratory of Reptiles (ZUFRJ). We also confirmed vouchers from Instituto Vital Brazil (IVB) and from the Museum of Comparative Zoology (MCZ). We compiled a list containing 149 species of reptiles, distributed among Testudines (N = 15), Crocodylia (N = 1) and Squamata (N = 133; six amphisbaenians, 38 lizards and 89 snakes). Our results add 20 species to the previous list known for the state. Four species recorded are endemic to the state of Rio de Janeiro (Anolis neglectus, Glaucomastix littoralis, Leposternon scutigerum, and Liolaemus lutzae). We identified that 21 reptile species recorded in RJ state (nearly 15% of the total) are included in some threat category either in the IUCN, Brazilian (ICMBio) or state lists of endangered species. We also report that seven of the reptiles recorded are non-indigenous to the state: Cnemidophorus aff. lemniscatus (= Cnemidophorus cryptus), Anolis sagrei, Trachemys scripta, Trachemys dorbigni, Hemidactylus mabouia, Crotalus durissus terrificus, and Rhinoclemmys punctularia. The checklist presented here provides a comprehensive database for further research on the herpetofauna of the Brazilian Atlantic Forest.

Scutation asymmetries in red-footed tortoise Chelonoidis carbonaria Spix, 1824 (Testudines: Testudinidae)

The ability of an individual to withstand random perturbations during its development is considered a good indicator of environmental and genetic stress. A common means of assessing developmental stability is through analysis of fluctuating asymmetry (FA) in bilateral traits. Tortoises, with their large, solid plastron, allow for measurement of body geometry. Their bilateral shell scutes are ideal candidates for asymmetries researches. With this issue in mind we assessed, as a preliminary study, levels of plastron scute asymmetry in a sample of 46 red-footed tortoise Chelonoidis carbonaria from Arauca, N Colombia. We found significative fluctuating asymmetry (FA) but no directional asymmetry, the former not increasing with carapace size and thus indicating that tortoise shells do not become increasingly asymmetrical with age, or in other words, signaling that FA is not being influenced by pholidosis (variability of scale cover mosaic according to the development of the scutes). Asymmetry in plastron shape, although not necessarily apparent at first glance, varied, with gender with males exhibiting higher levels of FA than females. Although we can not identify the potential sources of variation responsible for the observed patterns of developmental instability, we consider this detected form of asymmetry due to unfavorable environmental conditions.

Identifying genetic lineages through shape: An example in a cosmopolitan marine turtle species using geometric morphometrics.

The green turtle (Chelonia mydas) is a globally distributed marine species whose evolutionary history has been molded by geological events and oceanographic and climate changes. Divergence between Atlantic and Pacific clades has been associated with the uplift of the Panama Isthmus, and inside the Pacific region, a biogeographic barrier located west of Hawaii has restricted the gene flow between Central/Eastern and Western Pacific populations. We investigated the carapace shape of C. mydas from individuals of Atlantic, Eastern Pacific, and Western Pacific genetic lineages using geometric morphometrics to evaluate congruence between external morphology and species' phylogeography. Furthermore, we assessed the variation of carapace shape according to foraging grounds. Three morphologically distinctive groups were observed which aligned with predictions based on the species' lineages, suggesting a substantial genetic influence on carapace shape. Based on the relationship between this trait and genetic lineages, we propose the existence of at least three distinct morphotypes of C. mydas. Well-defined groups in some foraging grounds (Galapagos, Costa Rica and New Zealand) may suggest that ecological or environmental conditions in these sites could also be influencing carapace shape in C. mydas. Geometric morphometrics is a suitable tool to differentiate genetic lineages in this cosmopolitan marine species. Consequently, this study opens new possibilities to explore and test ecological and evolutionary hypotheses in species with wide morphological variation and broad geographic distribution range.

Climatic niche evolution in turtles is characterized by phylogenetic conservatism for both aquatic and terrestrial species.

Understanding how the climatic niche of species evolved has been a topic of high interest in current theoretical and applied macroecological studies. However, little is known regarding how species traits might influence climatic niche evolution. Here, we evaluated patterns of climatic niche evolution in turtles (tortoises and freshwater turtles) and whether species habitat (terrestrial or aquatic) influences these patterns. We used phylogenetic, climatic and distribution data for 261 species to estimate their climatic niches. Then, we compared whether niche overlap between sister species was higher than between random species pairs and evaluated whether niche optima and rates varied between aquatic and terrestrial species. Sister species had higher values of niche overlap than random species pairs, suggesting phylogenetic climatic niche conservatism in turtles. The climatic niche evolution of the group followed an Ornstein-Uhlenbeck model with different optimum values for aquatic and terrestrial species, but we did not find consistent evidence of differences in their rates of climatic niche evolution. We conclude that phylogenetic climatic niche conservatism occurs among turtle species. Furthermore, terrestrial and aquatic species occupy different climatic niches but these seem to have evolved at similar evolutionary rates, reinforcing the importance of habitat in understanding species climatic niches and their evolution.

Red-headed Amazon River Turtles in Venezuela and Colombia: population separation and connection along the famous route of Alexander von Humboldt.

Podocnemis erythrocephala, the Red-headed Amazon River Turtle, is distributed in the Amazon and Orinoco basins where it predominantly inhabits blackwater and has never been found in whitewater. The only permanent river connection between the habitats in the different river basins features considerable whitewater proportions and, therefore, is hypothesised to be a dispersal barrier for this turtle species. By using variable neutral nuclear and mitochondrial markers (microsatellite loci and control region sequences), the present study assessed the genetic structure, genetic diversity, gene flow and historical biogeography of P. erythrocephala populations in Venezuela and Colombia in the Brazo Casiquiare (Amazon basin) and in the Ríos Atabapo and Inírida (Orinoco basin). The results clearly indicate a pronounced genetic differentiation between the Amazon basin populations and the Orinoco basin populations suggesting that a vicariant event separated the ancestors of the Orinoco basin populations. Several identified private mitochondrial DNA haplotypes and microsatellite alleles as well as a high genetic diversity observed in the Orinoco basin populations suggest that the Orinoco basin represents a historical blackwater refugium of P. erythrocephala. Analyses of past demographic processes revealed old bottlenecks and recent expansion. Historical and contemporary non-directional gene flow between the populations in the different river basins were identified and are supposed to have taken place via ephemeral inter-basin blackwater connections that might have formed at various locations, one of them being located on the famous travelling route of Alexander von Humboldt. The P. erythrocephala populations in the Ríos Atabapo and Inírida should together be considered as an evolutionarily significant unit, and each of them should be classified as an independent management unit for conservation.

Physical mapping of repetitive DNA suggests 2n reduction in Amazon turtles Podocnemis (Testudines: Podocnemididae).

Cytogenetic studies show that there is great karyotypic diversity in order Testudines (2n = 26-68), and that this may be mainly attributed to the presence/absence of microchromosomes. Members of the Podocnemididae family have the smallest diploid numbers of this order (2n = 26-28), which may be a derived condition of the group. Diverse studies suggest that repetitive-DNA-rich sites generally act as hotspots for double-strand breaks and chromosomal reorganization. In this context, we used fluorescent in situ hybridization (FISH) to map telomeric sequences (TTAGGG)n, 45S rDNA, and the genes encoding histones H1 and H3 in two species of genus Podocnemis. We also observed conservation of the 45S rDNA and H1 histone sequences (probable case of conserved synteny), but multiple conserved and non-conserved clusters of H3 genes, which colocalized with the interstitial telomeric sequences in the Podocnemis genome. Our results suggest that fusions have occurred between macro and microchromosomes or between microchromosomes, leading to the observed reduction in diploid number in the family Podocnemididae.

Amphiorchis stacyi n. sp. (Digenea: Spirorchiidae) in the heart of a green turtle from Florida, USA and the literature review of Amphiorchis (Price, 1934).

The present paper reports the occurrence of the seventh species in the genus Amphiorchis (Digenea: Spirorchiidae) collected from the heart of a green turtle found in Florida, USA. A taxonomic key to the species of Amphiorchis and a literature review for the genus are presented.

Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles.

Despite their complex evolutionary history and the rich fossil record, the higher level phylogeny and historical biogeography of living turtles have not been investigated in a comprehensive and statistical framework. To tackle these issues, we assembled a large molecular dataset, maximizing both taxonomic and gene sampling. As different models provide alternative biogeographical scenarios, we have explicitly tested such hypotheses in order to reconstruct a robust biogeographical history of Testudines. We scanned publicly available databases for nucleotide sequences and composed a dataset comprising 13 loci for 294 living species of Testudines, which accounts for all living genera and 85% of their extant species diversity. Phylogenetic relationships and species divergence times were estimated using a thorough evaluation of fossil information as calibration priors. We then carried out the analysis of historical biogeography of Testudines in a fully statistical framework. Our study recovered the first large-scale phylogeny of turtles with well-supported relationships following the topology proposed by phylogenomic works. Our dating result consistently indicated that the origin of the main clades, Pleurodira and Cryptodira, occurred in the early Jurassic. The phylogenetic and historical biogeographical inferences permitted us to clarify how geological events affected the evolutionary dynamics of crown turtles. For instance, our analyses support the hypothesis that the breakup of Pangaea would have driven the divergence between the cryptodiran and pleurodiran lineages. The reticulated pattern in the ancestral distribution of the cryptodiran lineage suggests a complex biogeographic history for the clade, which was supposedly related to the complex paleogeographic history of Laurasia. On the other hand, the biogeographical history of Pleurodira indicated a tight correlation with the paleogeography of the Gondwanan landmasses.

Morphological variation in the Brazilian Radiated Swamp Turtle Acanthochelys radiolata (Mikan, 1820) (Testudines: Chelidae).

The freshwater turtle Acanthochelys radiolata (Mikan, 1820) is endemic to the Atlantic Forest domain in Brazil and few studies have been done on the morphology, geographic variation and taxonomy of this species. In this paper we record the morphological variation, as well as sexual dimorphism and ontogenetic changes in A. radiolata throughout its distribution range. We analyzed 118 morphological characters from 41 specimens, both quantitative and qualitative, and performed statistical analyses to evaluate size and shape variation within our sample. Morphological analysis revealed that A. radiolata is a polymorphic species, especially regarding color and shape. Two color patterns were recognized for the carapace and three for the plastron. Diagnostic characteristics of the species, such as the rounded tubercles on the neck and the shallow dorsal sulcus between the 2nd and 4th vertebral scutes, varied considerably. Acanthochelys radiolata also showed a high level of ontogenetic variation characterized by a change on the color pattern of plastron and limbs starting from the 4th month of life. Sexual size dimorphism was observed for the first time on nine morphometric variables and females showed larger sizes than males. Based on these results we conclude that A. radiolata represents one single polymorphic species distributed in the lowlands of the Brazilian Atlantic Forest from the state of Alagoas to the state of Rio de Janeiro and the south of Minas Gerais state.