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1.
J Agric Food Chem ; 72(26): 14557-14569, 2024 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-38957088

RESUMO

This study aimed to investigate the mechanisms by which dark septate endophytes (DSE) regulate salt tolerance and the accumulation of bioactive constituents in licorice. First, the salt stress tolerance and resynthesis with the plant effect of isolated DSE from wild licorice were tested. Second, the performance of licorice inoculated with DSE, which had the best salt-tolerant and growth-promoting effects, was examined under salt stress. All isolated DSE showed salt tolerance and promoted plant growth, withCurvularia lunata D43 being the most effective. Under salt stress, C. lunata D43 could promote growth, increase antioxidant enzyme activities, enhance glycyrrhizic acid accumulation, improve key enzyme activities in the glycyrrhizic acid synthesis pathway, and induce the expression of the key enzyme gene and salt tolerance gene of licorice. The structural equation model demonstrated that DSE alleviate the negative effects of salt stress through direct and indirect pathways. Variations in key enzyme activities, gene expression, and bioactive constituent concentration can be attributed to the effects of DSE. These results contribute to revealing the value of DSE for cultivating medicinal plants in saline soils.


Assuntos
Endófitos , Glycyrrhiza , Ácido Glicirrízico , Estresse Salino , Ácido Glicirrízico/metabolismo , Glycyrrhiza/química , Glycyrrhiza/metabolismo , Glycyrrhiza/microbiologia , Endófitos/metabolismo , Endófitos/genética , Tolerância ao Sal , Ascomicetos/metabolismo , Ascomicetos/crescimento & desenvolvimento , Proteínas de Plantas/metabolismo , Proteínas de Plantas/genética , Regulação da Expressão Gênica de Plantas
2.
BMC Plant Biol ; 24(1): 622, 2024 Jun 29.
Artigo em Inglês | MEDLINE | ID: mdl-38951756

RESUMO

Hybrid genotypes can provide significant yield gains over conventional inbred varieties due to heterosis or hybrid vigor. However, hybrids can also display unintended negative attributes or phenotypes such as extreme pathogen susceptibility. The necrotrophic pathogen Pyrenophora teres f. maculata (Ptm) causes spot form net blotch, which has caused significant yield losses to barley worldwide. Here, we report on a non-transgressive hybrid susceptibility locus in barley identified between the three parental lines CI5791, Tifang and Golden Promise that are resistant to Ptm isolate 13IM.3. However, F2 progeny from CI5791 × Tifang and CI5791 × Golden Promise crosses exhibited extreme susceptibility. The susceptible phenotype segregated in a ratio of 1 resistant:1 susceptible representing a genetic segregation ratio of 1 parental (res):2 heterozygous (sus):1 parental (res) suggesting a single hybrid susceptibility locus. Genetic mapping using a total of 715 CI5791 × Tifang F2 individuals (1430 recombinant gametes) and 149 targeted SNPs delimited the hybrid susceptibility locus designated Susceptibility to Pyrenophora teres 2 (Spt2) to an ~ 198 kb region on chromosome 5H of the Morex V3 reference assembly. This single locus was independently mapped with 83 CI5791 × Golden Promise F2 individuals (166 recombinant gametes) and 180 genome wide SNPs that colocalized to the same Spt2 locus. The CI5791 genome was sequenced using PacBio Continuous Long Read technology and comparative analysis between CI5791 and the publicly available Golden Promise genome assembly determined that the delimited region contained a single high confidence Spt2 candidate gene predicted to encode a pentatricopeptide repeat-containing protein.


Assuntos
Ascomicetos , Mapeamento Cromossômico , Hordeum , Doenças das Plantas , Hordeum/genética , Hordeum/microbiologia , Doenças das Plantas/microbiologia , Doenças das Plantas/genética , Ascomicetos/fisiologia , Resistência à Doença/genética , Fenótipo , Polimorfismo de Nucleotídeo Único , Hibridização Genética , Vigor Híbrido/genética , Genótipo
3.
Mol Plant Pathol ; 25(7): e13489, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38956897

RESUMO

A cell death pathway, ferroptosis, occurs in conidial cells and is critical for formation and function of the infection structure, the appressorium, in the rice blast fungus Magnaporthe oryzae. In this study, we identified an orthologous lysophosphatidic acid acyltransferase (Lpaat) acting at upstream of phosphatidylethanolamines (PEs) biosynthesis and which is required for such fungal ferroptosis and pathogenicity. Two PE species, DOPE and SLPE, that depend on Lpaat function for production were sufficient for induction of lipid peroxidation and the consequent ferroptosis, thus positively regulating fungal pathogenicity. On the other hand, both DOPE and SLPE positively regulated autophagy. Loss of the LPAAT gene led to a decrease in the lipidated form of the autophagy protein Atg8, which is probably responsible for the autophagy defect of the lpaatΔ mutant. GFP-Lpaat was mostly localized on the membrane of lipid droplets (LDs) that were stained by the fluorescent dye monodansylpentane (MDH), suggesting that LDs serve as a source of lipids for membrane PE biosynthesis and probably as a membrane source of autophagosome. Overall, our results reveal novel intracellular membrane-bound organelle dynamics based on Lpaat-mediated lipid metabolism, providing a temporal and spatial link of ferroptosis and autophagy.


Assuntos
Autofagia , Ferroptose , Oryza , Fosfatidiletanolaminas , Doenças das Plantas , Fosfatidiletanolaminas/metabolismo , Oryza/microbiologia , Oryza/metabolismo , Doenças das Plantas/microbiologia , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Aciltransferases/metabolismo , Aciltransferases/genética , Ascomicetos/patogenicidade , Ascomicetos/metabolismo
4.
Commun Biol ; 7(1): 812, 2024 Jul 04.
Artigo em Inglês | MEDLINE | ID: mdl-38965407

RESUMO

Wheat blast caused by Pyricularia oryzae pathotype Triticum is now becoming a very serious threat to global food security. Here, we report an essential pathogenicity factor of the wheat blast fungus that is recognized and may be targeted by a rice resistance gene. Map-based cloning of Pwt2 showed that its functional allele is the ACE1 secondary metabolite gene cluster of the wheat blast fungus required for its efficient penetration of wheat cell walls. ACE1 is required for the strong aggressiveness of Triticum, Eleusine, and Lolium pathotypes on their respective hosts, but not for that of Oryza and Setaria pathotypes on rice and foxtail millet, respectively. All ACE1 alleles found in wheat blast population are recognized by a rice resistance gene, Pi33, when introduced into rice blast isolates. ACE1 mutations for evading the recognition by Pi33 do not affect the aggressiveness of the rice blast fungus on rice but inevitably impair the aggressiveness of the wheat blast fungus on wheat. These results suggest that a blast resistance gene already defeated in rice may be revived as a durable resistance gene in wheat by targeting an Achilles heel of the wheat blast fungus.


Assuntos
Família Multigênica , Oryza , Doenças das Plantas , Triticum , Triticum/microbiologia , Doenças das Plantas/microbiologia , Oryza/microbiologia , Ascomicetos/genética , Ascomicetos/patogenicidade , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Resistência à Doença/genética , Fatores de Virulência/genética , Fatores de Virulência/metabolismo , Metabolismo Secundário/genética
5.
BMC Microbiol ; 24(1): 243, 2024 Jul 04.
Artigo em Inglês | MEDLINE | ID: mdl-38965478

RESUMO

BACKGROUND: Lichens, traditionally considered as a simple partnership primarily between mycobiont and photobiont, are, in reality, complex holobionts comprised of a multitude of microorganisms. Lichen mycobiome represents fungal community residing within lichen thalli. While it is acknowledged that factors like the host lichen species and environmental conditions influence the structure of the lichen mycobiome, the existing research remains insufficient. To investigate which factor, host genus or location, has a greater impact on the lichen mycobiome, we conducted a comparative analysis of mycobiomes within Parmelia and Peltigera collected from both Turkey and South Korea, using high-throughput sequencing based on internal transcribed spacer region amplification. RESULTS: Overall, the lichen mycobiome was dominated by Capnodiales (Dothideomycetes), regardless of host or location. At the order level, the taxonomic composition was not significantly different according to lichen genus host or geographical distance. Hierarchical clustering of the top 100 abundant ASVs did not clearly indicate whether the lichen mycobiome was more influenced by host genus or location. Analyses of community similarity and partitioning variables revealed that the structure of the lichen mycobiome is more significantly influenced by location than by host genus. When analyzing the core mycobiome by host genus, the Peltigera mycobiome contained more ASV members than the Parmelia mycobiome. These two core mycobiomes also share common fungal strains, including basidiomycete yeast. Additionally, we used chi-squared tests to identify host genus-specialists and location-specialists. CONCLUSIONS: By comparing lichen mycobiomes of the same genera across different countries, our study advances our comprehension of these microbial communities. Our study elucidates that, although host species play a contributory role, geographic distance exerts a more pronounced impact on the structure of lichen mycobiome. We have made foundational contributions to understanding the lichen mycobiome occupying ecologically crucial niches. We anticipate that broader global-scale investigations into the fungal community structures will provide more detailed insights into fungal residents within lichens.


Assuntos
DNA Fúngico , Líquens , Micobioma , República da Coreia , Turquia , Líquens/microbiologia , Líquens/classificação , DNA Fúngico/genética , Ascomicetos/classificação , Ascomicetos/isolamento & purificação , Ascomicetos/genética , Sequenciamento de Nucleotídeos em Larga Escala , Filogenia , Fungos/classificação , Fungos/isolamento & purificação , Fungos/genética , Parmeliaceae/genética
6.
Sci Rep ; 14(1): 15601, 2024 Jul 06.
Artigo em Inglês | MEDLINE | ID: mdl-38971913

RESUMO

The electrical potential of the mycelia of a cord-forming wood decay fungus, Pholiota brunnescens, was monitored for over 100 days on a plain agar plate during the colonization onto a wood bait. Causality analyses of the electrical potential at different locations of the mycelium revealed a clear and stable causal relationship with the directional flow of the electrical potential from the hyphae at the bait location to other parts of the mycelium. However, this causality disappeared after 60 days of incubation, coinciding with the onset of slow electrical oscillation at the bait location, which occurred over one week per oscillation cycle. We speculated that the hyphae that initially colonized the bait may act as a temporary activity center, which generates electrical signals to other parts of the mycelium, thereby facilitating the colonization of the entire mycelial body to the bait. The week-long electrical oscillation represents the longest oscillation period ever recorded in fungi and warrants further investigation to elucidate its function and stability in response to environmental stimuli.


Assuntos
Micélio , Micélio/fisiologia , Hifas/fisiologia , Ascomicetos/fisiologia , Madeira/microbiologia
7.
Arch Virol ; 169(8): 165, 2024 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-38990253

RESUMO

Monilinia fructicola is one of the most devastating fungal diseases of rosaceous fruit crops, both in the field and postharvest, causing significant yield losses. Here, we report the discovery of a novel positive single-stranded RNA virus, Monilinia fructicola hypovirus 3 (MfHV3), in a strain (hf-1) of the phytopathogenic fungus Monilinia fructicola. The complete genome of MfHV3 is 9259 nucleotides (nt) in length and contains a single large open reading frame (ORF) from nt position 462 to 8411. This ORF encodes a polyprotein with three conserved domains, namely UDP-glycosyltransferase, RNA-dependent RNA polymerase (RdRp), and DEAD-like helicase. The MfHV3 polyprotein shares the highest similarity with Colletotrichum camelliae hypovirus 1. Phylogenetic analysis indicated that MfHV3 clustered with members of the genus Betahypovirus within the family Hypoviridae. Taken together, the results of genomic organization comparisons, amino acid sequence alignments, and phylogenetic analysis convincingly show that MfHV3 is a new member of the genus Betahypovirus, family Hypoviridae.


Assuntos
Ascomicetos , Micovírus , Genoma Viral , Fases de Leitura Aberta , Filogenia , Doenças das Plantas , Ascomicetos/virologia , Ascomicetos/genética , Micovírus/genética , Micovírus/classificação , Micovírus/isolamento & purificação , Doenças das Plantas/microbiologia , Doenças das Plantas/virologia , RNA Viral/genética , Proteínas Virais/genética , Sequenciamento Completo do Genoma , Vírus de RNA/genética , Vírus de RNA/classificação , Vírus de RNA/isolamento & purificação , RNA Polimerase Dependente de RNA/genética , Sequência de Aminoácidos
8.
Science ; 385(6705): 194-200, 2024 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-38991070

RESUMO

Millions of hibernating bats across North America have died from white-nose syndrome (WNS), an emerging disease caused by a psychrophilic (cold-loving) fungus, Pseudogymnoascus destructans, that invades their skin. Mechanisms of P. destructans invasion of bat epidermis remain obscure. Guided by our in vivo observations, we modeled hibernation with a newly generated little brown bat (Myotis lucifugus) keratinocyte cell line. We uncovered the stealth intracellular lifestyle of P. destructans, which inhibits apoptosis of keratinocytes and spreads through the cells by two epidermal growth factor receptor (EGFR)-dependent mechanisms: active penetration during torpor and induced endocytosis during arousal. Melanin of endocytosed P. destructans blocks endolysosomal maturation, facilitating P. destructans survival and germination after return to torpor. Blockade of EGFR aborts P. destructans entry into keratinocytes.


Assuntos
Nível de Alerta , Ascomicetos , Quirópteros , Receptores ErbB , Hibernação , Queratinócitos , Animais , Apoptose , Ascomicetos/fisiologia , Ascomicetos/patogenicidade , Linhagem Celular , Quirópteros/microbiologia , Quirópteros/fisiologia , Endocitose , Receptores ErbB/metabolismo , Queratinócitos/microbiologia , Melaninas/metabolismo
9.
Science ; 385(6705): 142-143, 2024 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-38991085

RESUMO

A fungus uses different cell entry strategies, depending on its host's hibernation status.


Assuntos
Ascomicetos , Quirópteros , Hibernação , Interações Hospedeiro-Patógeno , Animais , Quirópteros/microbiologia , Quirópteros/fisiologia , Ascomicetos/patogenicidade
10.
BMC Plant Biol ; 24(1): 682, 2024 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-39020304

RESUMO

BACKGROUND: Septoria tritici blotch (STB) is considered to be one of the most destructive foliar wheat diseases and is caused by Zymoseptoria tritici. The yield losses are severe and in Northwestern Europe can reach up to 50%. The efficacy of fungicides is diminishing due to changes in the genetic structure of the pathogen. Therefore, resistance breeding is the most effective strategy of disease management. Recently, genome-wide association studies (GWAS) have become more popular due to their robustness in dissecting complex traits, including STB resistance in wheat. This was made possible by the use of large mapping populations and new sequencing technologies. High-resolution mapping benefits from historical recombination and greater allele numbers in GWAS. RESULTS: In our study, 217 wheat genotypes of diverse origin were phenotyped against five Z. tritici isolates (IPO323, IPO88004, IPO92004, IPO86036 and St1-03) and genotyped on the DArTseq platform. In polytunnel tests two disease parameters were evaluated: the percentage of leaf area covered by necrotic lesions (NEC) and the percentage of leaf area covered by lesions bearing pycnidia (PYC). The disease escape parameters heading date (Hd) and plant height (Ht) were also measured. Pearson's correlation showed a positive effect between disease parameters, providing additional information. The Structure analysis indicated four subpopulations which included from 28 (subpopulation 2) to 79 genotypes (subpopulation 3). All of the subpopulations showed a relatively high degree of admixture, which ranged from 60% of genotypes with less than 80% of proportions of the genome attributed to assigned subpopulation for group 2 to 85% for group 4. Haplotype-based GWAS analysis allowed us to identify 27 haploblocks (HBs) significantly associated with analysed traits with a p-value above the genome-wide significance threshold (5%, which was -log10(p) > 3.64) and spread across the wheat genome. The explained phenotypic variation of identified significant HBs ranged from 0.2% to 21.5%. The results of the analysis showed that four haplotypes (HTs) associated with disease parameters cause a reduction in the level of leaf coverage by necrosis and pycnidia, namely: Chr3A_HB98_HT2, Chr5B_HB47_HT1, Chr7B_HB36_HT1 and Chr5D_HB10_HT3. CONCLUSIONS: GWAS analysis enabled us to identify four significant chromosomal regions associated with a reduction in STB disease parameters. The list of valuable HBs and wheat varieties possessing them provides promising material for further molecular analysis of resistance loci and development of breeding programmes.


Assuntos
Ascomicetos , Resistência à Doença , Estudo de Associação Genômica Ampla , Genótipo , Haplótipos , Doenças das Plantas , Triticum , Triticum/genética , Triticum/microbiologia , Ascomicetos/fisiologia , Doenças das Plantas/microbiologia , Doenças das Plantas/genética , Resistência à Doença/genética , Mapeamento Cromossômico , Fenótipo , Genoma de Planta
11.
Food Microbiol ; 123: 104590, 2024 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-39038895

RESUMO

Apple ring rot, one of the most common apple postharvest diseases during storage, is caused by Botryosphaeria dothidea. Presently, the disease management is primarily dependent on chemical fungicide application. Here we demonstrated an endophyte bacterium Bacillus tequilensis QNF2, isolated from Chinese leek (Allium tuberosum) roots considerably suppressed B. dothidea mycelial growth, with the highest suppression of 73.56 % and 99.5 % in the PDA and PDB medium, respectively in vitro confront experiments. In in vivo experiments, B. tequilensis QNF2 exhibited a control efficacy of 88.52 % and 100 % on ring rot disease on postharvest apple fruits inoculated with B. dothidea disc and dipped into B. dothidea culture, respectively. In addition, B. tequilensis QNF2 volatile organic compounds (VOCs) also manifested markedly inhibition against B. dothidea mycelial growth and the ring rot on postharvest apple fruits. Moreover, B. tequilensis QNF2 severely damaged the mycelial morphology of B. dothidea. Finally, B. tequilensis QNF2 significantly repressed the expression of six pathogenicity-related genes, such as adh, aldh, aldh3, galm, pdc1, pdc2, involved in glycolysis/gluconeogenesis of B. dothidea. The findings of the study proved that B. tequilensis QNF2 was a promising alternative for controlling apple ring rot of postharvest apple fruit.


Assuntos
Ascomicetos , Bacillus , Endófitos , Frutas , Malus , Doenças das Plantas , Malus/microbiologia , Doenças das Plantas/microbiologia , Ascomicetos/crescimento & desenvolvimento , Ascomicetos/efeitos dos fármacos , Ascomicetos/genética , Ascomicetos/fisiologia , Bacillus/genética , Bacillus/fisiologia , Bacillus/isolamento & purificação , Endófitos/genética , Endófitos/metabolismo , Endófitos/isolamento & purificação , Endófitos/classificação , Endófitos/fisiologia , Frutas/microbiologia , Compostos Orgânicos Voláteis/farmacologia , Compostos Orgânicos Voláteis/metabolismo , Compostos Orgânicos Voláteis/análise , Antibiose , Micélio/crescimento & desenvolvimento , Micélio/efeitos dos fármacos
12.
J Agric Food Chem ; 72(29): 16359-16367, 2024 Jul 24.
Artigo em Inglês | MEDLINE | ID: mdl-39011851

RESUMO

In our screening program for natural products that are effective in controlling plant diseases, we found that the culture filtrate of Paraconiothyrium sporulosum SFC20160907-M11 effectively suppressed the development of tomato late blight disease caused by Phytophthora infestans. Using a bioassay-guided fractionation of antioomycete activity, 12 active compounds (1-12) were obtained from an ethyl acetate extract of the culture filtrate. Chemical structures of five new compounds 1-5 were determined by the extensive analyses of nuclear magnetic resonance (NMR), high resolution mass spectrometry (HRMS), and circular dichroism (CD) data. Interestingly, mycosporulonol (1) and botrallin (8) completely inhibited the growth of P. infestans at concentrations of 8 and 16 µg/mL, respectively. Furthermore, the spray treatment of 1 and 8 (500 µg/mL) successfully protected tomato seedlings against P. infestans with disease control values of 92%. Taken together, these results suggest that the culture filtrates of P. sporulosum SFC20160907-M11 and their bioactive metabolites can be used as new antioomycete agents for Phytophthora late blight control.


Assuntos
Ascomicetos , Fungicidas Industriais , Phytophthora infestans , Doenças das Plantas , Solanum lycopersicum , Solanum lycopersicum/microbiologia , Solanum lycopersicum/química , Doenças das Plantas/microbiologia , Phytophthora infestans/efeitos dos fármacos , Phytophthora infestans/crescimento & desenvolvimento , Ascomicetos/química , Ascomicetos/metabolismo , Fungicidas Industriais/farmacologia , Fungicidas Industriais/química , Estrutura Molecular , Espectroscopia de Ressonância Magnética
13.
Mol Plant Pathol ; 25(7): e13493, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-39034619

RESUMO

The cell wall is the first barrier against external adversity and plays roles in maintaining normal physiological functions of fungi. Previously, we reported a nucleosome assembly protein, MoNap1, in Magnaporthe oryzae that plays a role in cell wall integrity (CWI), stress response, and pathogenicity. Moreover, MoNap1 negatively regulates the expression of MoSMI1 encoded by MGG_03970. Here, we demonstrated that deletion of MoSMI1 resulted in a significant defect in appressorium function, CWI, cell morphology, and pathogenicity. Further investigation revealed that MoSmi1 interacted with MoOsm1 and MoMps1 and affected the phosphorylation levels of MoOsm1, MoMps1, and MoPmk1, suggesting that MoSmi1 regulates biological functions by mediating mitogen-activated protein kinase (MAPK) signalling pathway in M. oryzae. In addition, transcriptome data revealed that MoSmi1 regulates many infection-related processes in M. oryzae, such as membrane-related pathway and oxidation reduction process. In conclusion, our study demonstrated that MoSmi1 regulates CWI by mediating the MAPK pathway to affect development and pathogenicity of M. oryzae.


Assuntos
Proteínas Fúngicas , Proteínas Quinases Ativadas por Mitógeno , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Proteínas Quinases Ativadas por Mitógeno/metabolismo , Proteínas Quinases Ativadas por Mitógeno/genética , Virulência/genética , Regulação Fúngica da Expressão Gênica , Doenças das Plantas/microbiologia , Parede Celular/metabolismo , Sistema de Sinalização das MAP Quinases , Oryza/microbiologia , Fosforilação , Magnaporthe/patogenicidade , Magnaporthe/genética , Ascomicetos
14.
Molecules ; 29(13)2024 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-38999100

RESUMO

Plant diseases caused by pathogenic fungi seriously affect the yield and quality of crops, cause huge economic losses, and pose a considerable threat to global food security. Phenylpyrrole analogues were designed and synthesized based on alkaloid lycogalic acid. All target compounds were characterized by 1H NMR, 13C NMR, and HRMS. Their antifungal activities against seven kinds of phytopathogenic fungi were evaluated. The results revealed that most compounds had broad-spectrum fungicidal activities at 50 µg/mL; 14 compounds displayed more than 60% fungicidal activities against Rhizoctonia cerealis and Sclerotinia sclerotiorum, and in particular, the fungicidal activities of compounds 8g and 8h against Rhizoctonia cerealis were more than 90%, which could be further developed as lead agents for water-soluble fungicides. The molecular docking results indicate that compounds 8g and 8h can interact with 14α-demethylase (RcCYP51) through hydrogen bonding with strong affinity.


Assuntos
Alcaloides , Antifúngicos , Desenho de Fármacos , Simulação de Acoplamento Molecular , Pirróis , Rhizoctonia , Antifúngicos/farmacologia , Antifúngicos/síntese química , Antifúngicos/química , Pirróis/química , Pirróis/farmacologia , Pirróis/síntese química , Alcaloides/química , Alcaloides/farmacologia , Alcaloides/síntese química , Rhizoctonia/efeitos dos fármacos , Relação Estrutura-Atividade , Testes de Sensibilidade Microbiana , Estrutura Molecular , Ascomicetos/efeitos dos fármacos
15.
Int J Mol Sci ; 25(13)2024 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-39000053

RESUMO

Sclerotinia sclerotiorum (Ss) is one of the most devastating fungal pathogens, causing huge yield loss in multiple economically important crops including oilseed rape. Plant resistance to Ss pertains to quantitative disease resistance (QDR) controlled by multiple minor genes. Genome-wide identification of genes involved in QDR to Ss is yet to be conducted. In this study, we integrated several assays including genome-wide association study (GWAS), multi-omics co-localization, and machine learning prediction to identify, on a genome-wide scale, genes involved in the oilseed rape QDR to Ss. Employing GWAS and multi-omics co-localization, we identified seven resistance-associated loci (RALs) associated with oilseed rape resistance to Ss. Furthermore, we developed a machine learning algorithm and named it Integrative Multi-Omics Analysis and Machine Learning for Target Gene Prediction (iMAP), which integrates multi-omics data to rapidly predict disease resistance-related genes within a broad chromosomal region. Through iMAP based on the identified RALs, we revealed multiple calcium signaling genes related to the QDR to Ss. Population-level analysis of selective sweeps and haplotypes of variants confirmed the positive selection of the predicted calcium signaling genes during evolution. Overall, this study has developed an algorithm that integrates multi-omics data and machine learning methods, providing a powerful tool for predicting target genes associated with specific traits. Furthermore, it makes a basis for further understanding the role and mechanisms of calcium signaling genes in the QDR to Ss.


Assuntos
Ascomicetos , Brassica napus , Sinalização do Cálcio , Resistência à Doença , Estudo de Associação Genômica Ampla , Aprendizado de Máquina , Doenças das Plantas , Ascomicetos/patogenicidade , Resistência à Doença/genética , Doenças das Plantas/microbiologia , Doenças das Plantas/genética , Brassica napus/genética , Brassica napus/microbiologia , Brassica napus/imunologia , Sinalização do Cálcio/genética , Polimorfismo de Nucleotídeo Único , Locos de Características Quantitativas , Genômica/métodos , Multiômica
16.
Nat Commun ; 15(1): 5728, 2024 Jul 08.
Artigo em Inglês | MEDLINE | ID: mdl-38977688

RESUMO

Copy number variation (CNV) can drive rapid evolution in changing environments. In microbial pathogens, such adaptation is a key factor underpinning epidemics and colonization of new niches. However, the genomic determinants of such adaptation remain poorly understood. Here, we systematically investigate CNVs in a large genome sequencing dataset spanning a worldwide collection of 1104 genomes from the major wheat pathogen Zymoseptoria tritici. We found overall strong purifying selection acting on most CNVs. Genomic defense mechanisms likely accelerated gene loss over episodes of continental colonization. Local adaptation along climatic gradients was likely facilitated by CNVs affecting secondary metabolite production and gene loss in general. One of the strongest loci for climatic adaptation is a highly conserved gene of the NAD-dependent Sirtuin family. The Sirtuin CNV locus localizes to an ~68-kb Starship mobile element unique to the species carrying genes highly expressed during plant infection. The element has likely lost the ability to transpose, demonstrating how the ongoing domestication of cargo-carrying selfish elements can contribute to selectable variation within populations. Our work highlights how standing variation in gene copy numbers at the global scale can be a major factor driving climatic and metabolic adaptation in microbial species.


Assuntos
Ascomicetos , Variações do Número de Cópias de DNA , Genoma Fúngico , Triticum , Triticum/genética , Triticum/microbiologia , Variações do Número de Cópias de DNA/genética , Ascomicetos/genética , Genoma Fúngico/genética , Doenças das Plantas/microbiologia , Doenças das Plantas/genética , Adaptação Fisiológica/genética , Sequências Repetitivas Dispersas/genética , Elementos de DNA Transponíveis/genética
17.
Sci Rep ; 14(1): 15665, 2024 Jul 08.
Artigo em Inglês | MEDLINE | ID: mdl-38977720

RESUMO

Rice brown spot is an important disease of rice worldwide that inflicts substantial yield losses. The antimicrobial potential of methanol, acetone and dimethyl sulfoxide (DMSO) extracts of different medicinal plants, viz., Syzygium aromaticum, Saussurea costus, Acorus calamus, Bergenia ciliate, Geranium pratense, Mentha longifolia, Inula racemosa, Podophyllum hexandrum, Heracleum candicans and Picrorhiza kurroa, against the brown spot pathogen Bipolaris oryzae in vitro was evaluated via mycelial growth inhibition and spore germination inhibition assays. Among the plant extracts tested, 100% mycelial inhibition was observed for the methanol extract of Syzygium aromaticum at all three concentrations (2000 ppm, 3000 ppm and 4000 ppm), followed by the methanol extract of Inula racemosa (90.33%) at 4000 ppm. A maximum conidial germination inhibition of 83.54% was exhibited by the Heracleum candicans leaf extract. Phytochemical profiling of Syzygium aromaticum and Inula racemosa through liquid chromatography and mass spectrometry (HR-LCMS) revealed the presence of several compounds, such as eugenol, ursolic acid, quercetin, chlorogenic acid, and noscapine. A molecular docking approach was used to identify key inhibitory molecules against B. oryzae. Among the compounds detected in S. aromaticum and Inula racemosa, ursolic acid and noscapine were found to have the greatest binding affinity for the Big Mitogen Activated Protein Kinase (BMK-1) enzyme present in B. oryzae. In conclusion, S. aromaticum and Inula racemosa are potent compounds that could serve as lead compounds for drug discovery in the future.


Assuntos
Antifúngicos , Simulação de Acoplamento Molecular , Extratos Vegetais , Extratos Vegetais/farmacologia , Extratos Vegetais/química , Antifúngicos/farmacologia , Antifúngicos/química , Ascomicetos/efeitos dos fármacos , Plantas Medicinais/química , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/química , Doenças das Plantas/microbiologia , Oryza/microbiologia
18.
Nat Commun ; 15(1): 5795, 2024 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-38987250

RESUMO

Animals protect themself from microbial attacks by robust skins or a cuticle as in Caenorhabditis elegans. Nematode-trapping fungi, like Arthrobotrys flagrans, overcome the cuticle barrier and colonize the nematode body. While lytic enzymes are important for infection, small-secreted proteins (SSPs) without enzymatic activity, emerge as crucial virulence factors. Here, we characterized NipA (nematode induced protein) which A. flagrans secretes at the penetration site. In the absence of NipA, A. flagrans required more time to penetrate C. elegans. Heterologous expression of the fungal protein in the epidermis of C. elegans led to blister formation. NipA contains 13 cysteines, 12 of which are likely to form disulfide bridges, and the remaining cysteine was crucial for blister formation. We hypothesize that NipA interferes with cuticle integrity to facilitate fungal entry. Genome-wide expression analyses of C. elegans expressing NipA revealed mis-regulation of genes associated with extracellular matrix (ECM) maintenance and innate immunity.


Assuntos
Ascomicetos , Caenorhabditis elegans , Cisteína , Proteínas Fúngicas , Fatores de Virulência , Animais , Caenorhabditis elegans/microbiologia , Fatores de Virulência/metabolismo , Fatores de Virulência/genética , Cisteína/metabolismo , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Ascomicetos/patogenicidade , Ascomicetos/genética , Ascomicetos/metabolismo , Imunidade Inata , Matriz Extracelular/metabolismo , Proteínas de Caenorhabditis elegans/metabolismo , Proteínas de Caenorhabditis elegans/genética , Epiderme/metabolismo , Epiderme/microbiologia
19.
Cell Commun Signal ; 22(1): 362, 2024 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-39010102

RESUMO

Dihydroorotase (DHOase) is the third enzyme in the six enzymatic reaction steps of the endogenous pyrimidine nucleotide de novo biosynthesis pathway, which is a metabolic pathway conserved in both bacteria and eukaryotes. However, research on the biological function of DHOase in plant pathogenic fungi is very limited. In this study, we identified and named MoPyr4, a homologous protein of Saccharomyces cerevisiae DHOase Ura4, in the rice blast fungus Magnaporthe oryzae and investigated its ability to regulate fungal growth, pathogenicity, and autophagy. Deletion of MoPYR4 led to defects in growth, conidiation, appressorium formation, the transfer and degradation of glycogen and lipid droplets, appressorium turgor accumulation, and invasive hypha expansion in M. oryzae, which eventually resulted in weakened fungal pathogenicity. Long-term replenishment of exogenous uridine-5'-phosphate (UMP) can effectively restore the phenotype and virulence of the ΔMopyr4 mutant. Further study revealed that MoPyr4 also participated in the regulation of the Pmk1-MAPK signaling pathway, co-localized with peroxisomes for the oxidative stress response, and was involved in the regulation of the Osm1-MAPK signaling pathway in response to hyperosmotic stress. In addition, MoPyr4 interacted with MoAtg5, the core protein involved in autophagy, and positively regulated autophagic degradation. Taken together, our results suggested that MoPyr4 for UMP biosynthesis was crucial for the development and pathogenicity of M. oryzae. We also revealed that MoPyr4 played an essential role in the external stress response and pathogenic mechanism through participation in the Pmk1-MAPK signaling pathway, peroxisome-related oxidative stress response mechanism, the Osm1-MAPK signaling pathway and the autophagy pathway.


Assuntos
Autofagia , Proteínas Fúngicas , Oryza , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Oryza/microbiologia , Virulência/genética , Peroxissomos/metabolismo , Doenças das Plantas/microbiologia , Ascomicetos/patogenicidade , Ascomicetos/genética , Ascomicetos/enzimologia , Sistema de Sinalização das MAP Quinases , Estresse Oxidativo
20.
Proc Natl Acad Sci U S A ; 121(28): e2402872121, 2024 Jul 09.
Artigo em Inglês | MEDLINE | ID: mdl-38968126

RESUMO

Bioengineering of plant immune receptors has emerged as a key strategy for generating novel disease resistance traits to counteract the expanding threat of plant pathogens to global food security. However, current approaches are limited by rapid evolution of plant pathogens in the field and may lack durability when deployed. Here, we show that the rice nucleotide-binding, leucine-rich repeat (NLR) immune receptor Pik-1 can be engineered to respond to a conserved family of effectors from the multihost blast fungus pathogen Magnaporthe oryzae. We switched the effector binding and response profile of the Pik NLR from its cognate rice blast effector AVR-Pik to the host-determining factor pathogenicity toward weeping lovegrass 2 (Pwl2) by installing a putative host target, OsHIPP43, in place of the native integrated heavy metal-associated domain (generating Pikm-1OsHIPP43). This chimeric receptor also responded to other PWL alleles from diverse blast isolates. The crystal structure of the Pwl2/OsHIPP43 complex revealed a multifaceted, robust interface that cannot be easily disrupted by mutagenesis, and may therefore provide durable, broad resistance to blast isolates carrying PWL effectors in the field. Our findings highlight how the host targets of pathogen effectors can be used to bioengineer recognition specificities that have more robust properties compared to naturally evolved disease resistance genes.


Assuntos
Proteínas Fúngicas , Proteínas NLR , Oryza , Doenças das Plantas , Proteínas de Plantas , Oryza/microbiologia , Oryza/imunologia , Doenças das Plantas/microbiologia , Doenças das Plantas/imunologia , Proteínas NLR/metabolismo , Proteínas de Plantas/metabolismo , Proteínas de Plantas/imunologia , Proteínas de Plantas/genética , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/imunologia , Interações Hospedeiro-Patógeno/imunologia , Resistência à Doença/imunologia , Imunidade Vegetal , Bioengenharia/métodos , Magnaporthe/imunologia , Magnaporthe/genética , Magnaporthe/metabolismo , Ligação Proteica , Receptores Imunológicos/metabolismo , Ascomicetos
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