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Spatial scaling in multiscale models: methods for coupling agent-based and finite-element models of wound healing.
Lee, Jia-Jye; Talman, Lee; Peirce, Shayn M; Holmes, Jeffrey W.
Afiliação
  • Lee JJ; Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.
  • Talman L; Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.
  • Peirce SM; Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, USA.
  • Holmes JW; Robert M. Berne Cardiovascular Research Center, University of Virginia, Charlottesville, VA, USA.
Biomech Model Mechanobiol ; 18(5): 1297-1309, 2019 Oct.
Article em En | MEDLINE | ID: mdl-30968216
Multiscale models that couple agent-based modeling (ABM) and finite-element modeling (FEM) allow the dynamic simulation of tissue remodeling and wound healing, with mechanical environment influencing cellular behaviors even as tissue remodeling modifies mechanics. One of the challenges in coupling ABM to FEM is that these two domains typically employ grid or element sizes that differ by several orders of magnitude. Here, we develop and demonstrate an interpolation-based method for mapping between ABM and FEM domains of different resolutions that is suitable for linear and nonlinear FEM meshes and balances accuracy with computational demands. We then explore the effects of refining the FEM mesh and the ABM grid in the setting of a fully coupled model. ABM grid refinement studies showed unexpected effects of grid size whenever cells were present at a high enough density for crowding to affect proliferation and migration. In contrast to an FE-only model, refining the FE mesh in the coupled model increased strain differences between adjacent finite elements. Allowing strain-dependent feedback on collagen turnover magnified the effects of regional heterogeneity, producing highly nonlinear spatial and temporal responses. Our results suggest that the choice of both ABM grid and FEM mesh density in coupled models must be guided by experimental data and accompanied by careful grid and mesh refinement studies in the individual domains as well as the fully coupled model.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Análise de Sistemas / Cicatrização / Análise de Elementos Finitos / Modelos Biológicos Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: Biomech Model Mechanobiol Assunto da revista: ENGENHARIA BIOMEDICA Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Alemanha

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Análise de Sistemas / Cicatrização / Análise de Elementos Finitos / Modelos Biológicos Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: Biomech Model Mechanobiol Assunto da revista: ENGENHARIA BIOMEDICA Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Alemanha