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PhaSepDB: a database of liquid-liquid phase separation related proteins.
You, Kaiqiang; Huang, Qi; Yu, Chunyu; Shen, Boyan; Sevilla, Cristoffer; Shi, Minglei; Hermjakob, Henning; Chen, Yang; Li, Tingting.
Afiliação
  • You K; Department of Biomedical Informatics, Peking University Health Science Center, Beijing 100191, China.
  • Huang Q; Department of Biomedical Informatics, Peking University Health Science Center, Beijing 100191, China.
  • Yu C; Department of Biomedical Informatics, Peking University Health Science Center, Beijing 100191, China.
  • Shen B; Department of Biomedical Informatics, Peking University Health Science Center, Beijing 100191, China.
  • Sevilla C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
  • Shi M; MOE Key Laboratory of Bioinformatics, Bioinformatics Division and Center for Synthetic & Systems Biology, BNRist, Department of Automation, Tsinghua University, Beijing 100084, China.
  • Hermjakob H; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
  • Chen Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Life Omics, Beijing 102206, China.
  • Li T; MOE Key Laboratory of Bioinformatics, Bioinformatics Division and Center for Synthetic & Systems Biology, BNRist, Department of Automation, Tsinghua University, Beijing 100084, China.
Nucleic Acids Res ; 48(D1): D354-D359, 2020 01 08.
Article em En | MEDLINE | ID: mdl-31584089
It's widely appreciated that liquid-liquid phase separation (LLPS) underlies the formation of membraneless organelles, which function to concentrate proteins and nucleic acids. In the past few decades, major efforts have been devoted to identify the phase separation associated proteins and elucidate their functions. To better utilize the knowledge dispersed in published literature, we developed PhaSepDB (http://db.phasep.pro/), a manually curated database of phase separation associated proteins. Currently, PhaSepDB includes 2914 non-redundant proteins localized in different organelles curated from published literature and database. PhaSepDB provides protein summary, publication reference and sequence features of phase separation associated proteins. The sequence features which reflect the LLPS behavior are also available for other human protein candidates. The online database provides a convenient interface for the research community to easily browse, search and download phase separation associated proteins. As a centralized resource, we believe PhaSepDB will facilitate the future study of phase separation.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Organelas / Proteínas / Bases de Dados de Proteínas Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2020 Tipo de documento: Article País de afiliação: China País de publicação: Reino Unido

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Organelas / Proteínas / Bases de Dados de Proteínas Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2020 Tipo de documento: Article País de afiliação: China País de publicação: Reino Unido