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Dynamics of Ligand Binding to a Rigid Glycosidase*.
Ben Bdira, Fredj; Waudby, Christopher A; Volkov, Alexander N; Schröder, Sybrin P; Ab, Eiso; Codée, Jeroen D C; Overkleeft, Hermen S; Aerts, Johannes M F G; van Ingen, Hugo; Ubbink, Marcellus.
Afiliação
  • Ben Bdira F; Department of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
  • Waudby CA; Institute of Structural and Molecular Biology, University College London and Birkbeck College, London, WC1E 6BT, UK.
  • Volkov AN; VIB-VUB Center for Structural Biology, Pleinlaan 2, 1050, Brussels, Belgium.
  • Schröder SP; Jean Jeener NMR Centre, VUB, Pleinlaan 2, 1050, Brussels, Belgium.
  • Ab E; Department of Bio-organic Synthesis, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
  • Codée JDC; ZoBio BV, BioPartner 2 building, J.H. Oortweg 19, 2333 CH, Leiden, The Netherlands.
  • Overkleeft HS; Department of Bio-organic Synthesis, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
  • Aerts JMFG; Department of Bio-organic Synthesis, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
  • van Ingen H; Department of Medical Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
  • Ubbink M; Department of Macromolecular Biochemistry, Leiden Institute of Chemistry, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Angew Chem Int Ed Engl ; 59(46): 20508-20514, 2020 11 09.
Article em En | MEDLINE | ID: mdl-32533782
The single-domain GH11 glycosidase from Bacillus circulans (BCX) is involved in the degradation of hemicellulose, which is one of the most abundant renewable biomaterials in nature. We demonstrate that BCX in solution undergoes minimal structural changes during turnover. NMR spectroscopy results show that the rigid protein matrix provides a frame for fast substrate binding in multiple conformations, accompanied by slow conversion, which is attributed to an enzyme-induced substrate distortion. A model is proposed in which the rigid enzyme takes advantage of substrate flexibility to induce a conformation that facilitates the acyl formation step of the hydrolysis reaction.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Glicosídeo Hidrolases Idioma: En Revista: Angew Chem Int Ed Engl Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Holanda País de publicação: Alemanha

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Glicosídeo Hidrolases Idioma: En Revista: Angew Chem Int Ed Engl Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Holanda País de publicação: Alemanha