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Triton X-114 Fractionated Subcellular Proteome of Leptospira interrogans Shows Selective Enrichment of Pathogenic and Outer Membrane Proteins in the Detergent Fraction.
Thoduvayil, Sikha; Dhandapani, Gunasekaran; Brahma, Rahul; Devasahayam Arokia Balaya, Rex; Mangalaparthi, Kiran K; Patel, Krishna; Kumar, Manish; Tennyson, Jebasingh; Satheeshkumar, P K; Kulkarni, Mahesh J; Pinto, Sneha M; Prasad, T S Keshava; Madanan, Madathiparambil G.
Afiliação
  • Thoduvayil S; Indian Council of Medical Research, Regional Medical Research Centre Port Blair, Dollygunj, Port Blair, 744103, India.
  • Dhandapani G; Department of Pathology, Jawaharlal Institute of Postgraduate Medical Education and Research, Puducherry, 605006, India.
  • Brahma R; Indian Council of Medical Research, Regional Medical Research Centre Port Blair, Dollygunj, Port Blair, 744103, India.
  • Devasahayam Arokia Balaya R; Department of Chemical Sciences, Ariel University, Ariel, 70400, Israel.
  • Mangalaparthi KK; Indian Council of Medical Research, Regional Medical Research Centre Port Blair, Dollygunj, Port Blair, 744103, India.
  • Patel K; Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangaluru, 575018, India.
  • Kumar M; Institute of Bioinformatics, International Technology Park, Bengaluru, 560066, India.
  • Tennyson J; NIMHANS-IOB Proteomics and Bioinformatics Laboratory, Neurobiology Research Centre, National Institute of Mental Health and Neurosciences, Bengaluru, 560029, India.
  • Satheeshkumar PK; Institute of Bioinformatics, International Technology Park, Bengaluru, 560066, India.
  • Kulkarni MJ; Amrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam, 690525, India.
  • Pinto SM; Institute of Bioinformatics, International Technology Park, Bengaluru, 560066, India.
  • Prasad TSK; Manipal Academy of Higher Education, Manipal, 576104, India.
  • Madanan MG; School of Biological Sciences, Madurai Kamaraj University, Madurai, 625021, India.
Proteomics ; 20(19-20): e2000170, 2020 10.
Article em En | MEDLINE | ID: mdl-32846045
The Triton X-114-based solubilization and temperature-dependent phase separation of proteins is used for subcellular fractionation where, aqueous, detergent, and pellet fractions represents cytoplasmic, outer membrane (OM), and inner membrane proteins, respectively. Mass spectrometry-based proteomic analysis of Triton X-114 fractions of proteomic analysis of Leptospira interrogans identified 2957 unique proteins distributed across the fractions. The results are compared with bioinformatics predictions on their subcellular localization and pathogenic nature. Analysis of the distribution of proteins across the Triton X-114 fractions with the predicted characteristics is performed based on "number" of unique type of proteins, and "quantity" which represents the amount of unique protein. The highest number of predicted outer membrane proteins (OMPs) and pathogenic proteins are found in aqueous and pellet fractions, whereas detergent fraction representing the OM has the highest quantity of OMPs and pathogenic proteins though lower in number than the aqueous and pellet fractions. This leaves the possibility of an upsurge in pathogenic proteins and OMPs on the OM under pathogenic conditions suggesting their potential use to combat leptospirosis. Further, the Triton X-114 subcellular fractions are more correlated to enrichment of pathogenic proteins predicted by MP3 software than predicted localization.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Octoxinol / Proteômica / Leptospira interrogans Tipo de estudo: Prognostic_studies Idioma: En Revista: Proteomics Assunto da revista: BIOQUIMICA Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Índia País de publicação: Alemanha

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Octoxinol / Proteômica / Leptospira interrogans Tipo de estudo: Prognostic_studies Idioma: En Revista: Proteomics Assunto da revista: BIOQUIMICA Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Índia País de publicação: Alemanha