Recalibration of mapping quality scores in Illumina short-read alignments improves SNP detection results in low-coverage sequencing data.

Cline, Eliot; Wisittipanit, Nuttachat; Boongoen, Tossapon; Chukeatirote, Ekachai; Struss, Darush; Eungwanichayapant, Anant

Cline, Eliot; Wisittipanit, Nuttachat; Boongoen, Tossapon; Chukeatirote, Ekachai; Struss, Darush; Eungwanichayapant, Anant.

Afiliação

Cline E; School of Science, Mae Fah Luang University, Amphur Muang, Chiang Rai, Thailand.
Wisittipanit N; Department of Biotechnology, East West Seed Company, San Sai, Chiang Mai, Thailand.
Boongoen T; School of Science, Mae Fah Luang University, Amphur Muang, Chiang Rai, Thailand.
Chukeatirote E; Center of Excellence in AI and Emerging Technologies, School of Information Technology, Mae Fah Luang University, Amphur Muang, Chiang Rai, Thailand.
Struss D; School of Science, Mae Fah Luang University, Amphur Muang, Chiang Rai, Thailand.
Eungwanichayapant A; Department of Biotechnology, East West Seed Company, San Sai, Chiang Mai, Thailand.

PeerJ ; 8: e10501, 2020.

Article em En | MEDLINE | ID: mdl-33354434

Palavras-chave

BAM; Genome simulation; Low coverage sequencing; Machine learning; Probability calibration; Variant calling

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Tipo de estudo: Diagnostic_studies / Prognostic_studies Idioma: En Revista: PeerJ Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Tailândia País de publicação: Estados Unidos

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