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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples.
de Vries, Jutte J C; Brown, Julianne R; Fischer, Nicole; Sidorov, Igor A; Morfopoulou, Sofia; Huang, Jiabin; Munnink, Bas B Oude; Sayiner, Arzu; Bulgurcu, Alihan; Rodriguez, Christophe; Gricourt, Guillaume; Keyaerts, Els; Beller, Leen; Bachofen, Claudia; Kubacki, Jakub; Samuel, Cordey; Florian, Laubscher; Dennis, Schmitz; Beer, Martin; Hoeper, Dirk; Huber, Michael; Kufner, Verena; Zaheri, Maryam; Lebrand, Aitana; Papa, Anna; van Boheemen, Sander; Kroes, Aloys C M; Breuer, Judith; Lopez-Labrador, F Xavier; Claas, Eric C J.
Afiliação
  • de Vries JJC; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: jjcdevries@lumc.nl.
  • Brown JR; Microbiology, Virology and Infection Prevention & Control, Great Ormond Street Hospital for Children NHS Foundation Trust, London, United Kingdom. Electronic address: julianne.brown@gosh.nhs.uk.
  • Fischer N; University Medical Center Hamburg-Eppendorf, UKE Institute for Medical Microbiology, Virology and Hygiene, Germany. Electronic address: nfischer@uke.de.
  • Sidorov IA; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: I.A.Sidorov@lumc.nl.
  • Morfopoulou S; Division of Infection and Immunity, University College London, London, United Kingdom. Electronic address: sofia.morfopoulou.10@ucl.ac.uk.
  • Huang J; University Medical Center Hamburg-Eppendorf, UKE Institute for Medical Microbiology, Virology and Hygiene, Germany. Electronic address: j.huang@uke.de.
  • Munnink BBO; Viroscience, Erasmus Medical Center, Rotterdam, the Netherlands. Electronic address: b.oudemunnink@erasmusmc.nl.
  • Sayiner A; Dokuz Eylul University, Medical Faculty, Izmir, Turkey. Electronic address: arzu.sayiner@deu.edu.tr.
  • Bulgurcu A; Hospital Henri Mondor, Paris, France.
  • Rodriguez C; Hospital Henri Mondor, Paris, France. Electronic address: christophe.rodriguez@aphp.fr.
  • Gricourt G; Hospital Henri Mondor, Paris, France. Electronic address: guillaume.gricourt@aphp.fr.
  • Keyaerts E; Laboratory of Clinical and Epidemiological Virology (Rega Institute), KU Leuven, Belgium. Electronic address: els.keyaerts@kuleuven.be.
  • Beller L; Laboratory of Clinical and Epidemiological Virology (Rega Institute), KU Leuven, Belgium. Electronic address: leen.beller@kuleuven.be.
  • Bachofen C; Institute of Virology, University of Zurich, Switzerland. Electronic address: claudia.bachofen@uzh.ch.
  • Kubacki J; Institute of Virology, University of Zurich, Switzerland. Electronic address: jakub.kubacki@uzh.ch.
  • Samuel C; Laboratory of Virology, University Hospitals of Geneva, Geneva, Switzerland. Electronic address: Samuel.Cordey@hcuge.ch.
  • Florian L; Laboratory of Virology, University Hospitals of Geneva, Geneva, Switzerland. Electronic address: Florian.Laubscher@hcuge.ch.
  • Dennis S; RIVM National Institute for Public Health and Environment, Bilthoven, the Netherlands. Electronic address: Dennis.Schmitz@RIVM.nl.
  • Beer M; Friedrich-Loeffler-Institute, Institute of Diagnostic Virology, Greifswald, Germany. Electronic address: martin.beer@fli.de.
  • Hoeper D; Friedrich-Loeffler-Institute, Institute of Diagnostic Virology, Greifswald, Germany. Electronic address: dirk.hoeper@fli.de.
  • Huber M; Institute of Medical Virology, University of Zurich, Switzerland. Electronic address: huber.michael@virology.uzh.ch.
  • Kufner V; Institute of Medical Virology, University of Zurich, Switzerland. Electronic address: kufner.verena@virology.uzh.ch.
  • Zaheri M; Institute of Medical Virology, University of Zurich, Switzerland. Electronic address: zaheri.maryam@virology.uzh.ch.
  • Lebrand A; Swiss Institute of Bioinformatics, Geneva, Switzerland. Electronic address: aitana.lebrand@sib.swiss.
  • Papa A; Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Greece. Electronic address: annap@auth.gr.
  • van Boheemen S; Viroscience, Erasmus Medical Center, Rotterdam, the Netherlands. Electronic address: s.vanboheemen@erasmusmc.nl.
  • Kroes ACM; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: A.C.M.Kroes@lumc.nl.
  • Breuer J; Microbiology, Virology and Infection Prevention & Control, Great Ormond Street Hospital for Children NHS Foundation Trust, London, United Kingdom; Division of Infection and Immunity, University College London, London, United Kingdom. Electronic address: breuej@gosh.nhs.uk.
  • Lopez-Labrador FX; Virology Laboratory, Genomics and Health Area, Center for Public Health Research (FISABIO-Public Health), Generalitat Valenciana and Microbiology & Ecology Department, University of Valencia, Spain; CIBERESP, Instituto de Salud Carlos III, Spain. Electronic address: F.Xavier.Lopez@uv.es.
  • Claas ECJ; Clinical Microbiological Laboratory, Department of Medical Microbiology, Leiden University Medical Center, Leiden, the Netherlands. Electronic address: E.C.J.Claas@lumc.nl.
J Clin Virol ; 141: 104908, 2021 08.
Article em En | MEDLINE | ID: mdl-34273858
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Vírus / Biologia Computacional Tipo de estudo: Diagnostic_studies / Guideline / Prognostic_studies Limite: Humans Idioma: En Revista: J Clin Virol Assunto da revista: VIROLOGIA Ano de publicação: 2021 Tipo de documento: Article País de publicação: Holanda
Texto completo
Adicionar na Minha BVS
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Vírus / Biologia Computacional Tipo de estudo: Diagnostic_studies / Guideline / Prognostic_studies Limite: Humans Idioma: En Revista: J Clin Virol Assunto da revista: VIROLOGIA Ano de publicação: 2021 Tipo de documento: Article País de publicação: Holanda