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A local platform for user-friendly FAIR data management and reproducible analytics.
Wieser, Florian; Stryeck, Sarah; Lang, Konrad; Hahn, Christoph; Thallinger, Gerhard G; Feichtinger, Julia; Hack, Philipp; Stepponat, Manfred; Merchant, Nirav; Lindstaedt, Stefanie; Oberdorfer, Gustav.
Afiliação
  • Wieser F; Institute of Biochemistry, Graz University of Technology, 8010, Graz, Austria.
  • Stryeck S; Institute for Interactive Systems and Data Science, Graz University of Technology, 8010, Graz, Austria; Know-Center GmbH, 8010, Graz, Austria.
  • Lang K; Institute for Interactive Systems and Data Science, Graz University of Technology, 8010, Graz, Austria; Know-Center GmbH, 8010, Graz, Austria.
  • Hahn C; Institute of Biology, University of Graz, 8010, Graz, Austria.
  • Thallinger GG; Institute of Biomedical Informatics, Graz University of Technology, 8010, Graz, Austria; BioTechMed-Graz, Austria.
  • Feichtinger J; Division of Cell Biology, Histology and Embryology, Gottfried Schatz Research Center, Medical University of Graz, 8010, Graz, Austria; BioTechMed-Graz, Austria.
  • Hack P; Central Information Technology, Graz University of Technology, 8010, Graz, Austria.
  • Stepponat M; Central Information Technology, Graz University of Technology, 8010, Graz, Austria.
  • Merchant N; Data Science Institute, University of Arizona, BSRL 200 A, Tucson, AZ, 85721, United States.
  • Lindstaedt S; Institute for Interactive Systems and Data Science, Graz University of Technology, 8010, Graz, Austria; Know-Center GmbH, 8010, Graz, Austria. Electronic address: slind@know-center.at.
  • Oberdorfer G; Institute of Biochemistry, Graz University of Technology, 8010, Graz, Austria; BioTechMed-Graz, Austria. Electronic address: gustav.oberdorfer@tugraz.at.
J Biotechnol ; 341: 43-50, 2021 Nov 20.
Article em En | MEDLINE | ID: mdl-34400238
ABSTRACT
Collaborative research is common practice in modern life sciences. For most projects several researchers from multiple universities collaborate on a specific topic. Frequently, these research projects produce a wealth of data that requires central and secure storage, which should also allow for easy sharing among project participants. Only under best circumstances, this comes with minimal technical overhead for the researchers. Moreover, the need for data to be analyzed in a reproducible way often poses a challenge for researchers without a data science background and thus represents an overly time-consuming process. Here, we report on the integration of CyVerse Austria (CAT), a new cyberinfrastructure for a local community of life science researchers, and provide two examples how it can be used to facilitate FAIR data management and reproducible analytics for teaching and research. In particular, we describe in detail how CAT can be used (i) as a teaching platform with a defined software environment and data management/sharing possibilities, and (ii) to build a data analysis pipeline using the Docker technology tailored to the needs and interests of the researcher.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Gerenciamento de Dados País/Região como assunto: Europa Idioma: En Revista: J Biotechnol Assunto da revista: BIOTECNOLOGIA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Áustria

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Gerenciamento de Dados País/Região como assunto: Europa Idioma: En Revista: J Biotechnol Assunto da revista: BIOTECNOLOGIA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Áustria