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Chromosome-scale genomes of commercial timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis).
Sahu, Sunil Kumar; Liu, Min; Chen, Yewen; Gui, Jinshan; Fang, Dongming; Chen, Xiaoli; Yang, Ting; He, Chengzhong; Cheng, Le; Yang, Jinlong; Sahu, Durgesh Nandini; Li, Linzhou; Wang, Hongli; Mu, Weixue; Wei, Jinpu; Liu, Jie; Zhao, Yuxian; Zhang, Shouzhou; Lisby, Michael; Liu, Xin; Xu, Xun; Li, Laigeng; Wang, Sibo; Liu, Huan.
Afiliação
  • Sahu SK; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Liu M; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Chen Y; BGI Life Science Joint Research Center, Northeast Forestry University, Harbin, 150400, China.
  • Gui J; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Fang D; State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, 311300, Hangzhou, China.
  • Chen X; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Yang T; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • He C; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Cheng L; Southwest Forestry University, Kunming, Yunnan, 650224, China.
  • Yang J; BGI Research, Kunming, Yunnan, 650106, China.
  • Sahu DN; BGI Research, Kunming, Yunnan, 650106, China.
  • Li L; College of Forensic Science, Xi'an Jiaotong University, Xi'an, China.
  • Wang H; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Mu W; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Wei J; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Liu J; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Zhao Y; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Zhang S; Forestry Bureau of Ruili, Yunnan Dehong, Ruili, 678600, China.
  • Lisby M; Chinese Academy of Forestry, Beijing, China.
  • Liu X; Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen, Chinese Academy of Sciences, Shenzhen, 518004, China.
  • Xu X; Department of Biology, University of Copenhagen, Copenhagen, Denmark.
  • Li L; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Wang S; State Key Laboratory of Agricultural Genomics, Key Laboratory of Genomics, Ministry of Agriculture, BGI Research, Shenzhen, 518083, China.
  • Liu H; Guangdong Provincial Key Laboratory of Genome Read and Write, BGI Research, Shenzhen, 518083, China.
Sci Data ; 10(1): 512, 2023 08 03.
Article em En | MEDLINE | ID: mdl-37537171
Wood is the most important natural and endlessly renewable source of energy. Despite the ecological and economic importance of wood, many aspects of its formation have not yet been investigated. We performed chromosome-scale genome assemblies of three timber trees (Ochroma pyramidale, Mesua ferrea, and Tectona grandis) which exhibit different wood properties such as wood density, hardness, growth rate, and fiber cell wall thickness. The combination of 10X, stLFR, Hi-Fi sequencing and HiC data led us to assemble high-quality genomes evident by scaffold N50 length of 55.97 Mb (O. pyramidale), 22.37 Mb (M. ferrea) and 14.55 Mb (T. grandis) with >97% BUSCO completeness of the assemblies. A total of 35774, 24027, and 44813 protein-coding genes were identified in M. ferrea, T. grandis and O. pyramidale, respectively. The data generated in this study is anticipated to serve as a valuable genetic resource and will promote comparative genomic analyses, and it is of practical importance in gaining a further understanding of the wood properties in non-model woody species.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genoma de Planta / Bombacaceae Idioma: En Revista: Sci Data Ano de publicação: 2023 Tipo de documento: Article País de afiliação: China País de publicação: Reino Unido

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genoma de Planta / Bombacaceae Idioma: En Revista: Sci Data Ano de publicação: 2023 Tipo de documento: Article País de afiliação: China País de publicação: Reino Unido