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GenArk: towards a million UCSC genome browsers.
Clawson, Hiram; Lee, Brian T; Raney, Brian J; Barber, Galt P; Casper, Jonathan; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S; Lee, Christopher M; Nassar, Luis R; Perez, Gerardo; Wick, Brittney; Schmelter, Daniel; Speir, Matthew L; Armstrong, Joel; Zweig, Ann S; Kuhn, Robert M; Kirilenko, Bogdan M; Hiller, Michael; Haussler, David; Kent, W James; Haeussler, Maximilian.
Afiliação
  • Clawson H; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA. hclawson@ucsc.edu.
  • Lee BT; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Raney BJ; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Barber GP; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Casper J; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Diekhans M; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Fischer C; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Gonzalez JN; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Hinrichs AS; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Lee CM; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Nassar LR; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Perez G; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Wick B; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Schmelter D; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Speir ML; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Armstrong J; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Zweig AS; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Kuhn RM; Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
  • Kirilenko BM; LOEWE Centre for Translational Biodiversity Genomics, Senckenberganlage 25, 60325, Frankfurt, Germany.
  • Hiller M; Senckenberg Research Institute, Senckenberganlage 25, 60325, Frankfurt, Germany.
  • Haussler D; Institute of Cell Biology and Neuroscience, Faculty of Biosciences, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438, Frankfurt, Germany.
  • Kent WJ; LOEWE Centre for Translational Biodiversity Genomics, Senckenberganlage 25, 60325, Frankfurt, Germany.
  • Haeussler M; Senckenberg Research Institute, Senckenberganlage 25, 60325, Frankfurt, Germany.
Genome Biol ; 24(1): 217, 2023 10 02.
Article em En | MEDLINE | ID: mdl-37784172
Interactive graphical genome browsers are essential tools in genomics, but they do not contain all the recent genome assemblies. We create Genome Archive (GenArk) collection of UCSC Genome Browsers from NCBI assemblies. Built on our established track hub system, this enables fast visualization of annotations. Assemblies come with gene models, repeat masks, BLAT, and in silico PCR. Users can add annotations via track hubs and custom tracks. We can bulk-import third-party resources, demonstrated with TOGA and Ensembl gene models for hundreds of assemblies.Three thousand two hundred sixty-nine GenArk assemblies are listed at https://hgdownload.soe.ucsc.edu/hubs/ and can be searched for on the Genome Browser gateway page.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Genoma Idioma: En Revista: Genome Biol Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Reino Unido
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Genoma Idioma: En Revista: Genome Biol Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos País de publicação: Reino Unido