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Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability.
Meyer, Raïssa; Appeltans, Ward; Duncan, William D; Dimitrova, Mariya; Gan, Yi-Ming; Stjernegaard Jeppesen, Thomas; Mungall, Christopher; Paul, Deborah L; Provoost, Pieter; Robertson, Tim; Schriml, Lynn; Suominen, Saara; Walls, Ramona; Sweetlove, Maxime; Ung, Visotheary; Van de Putte, Anton; Wallis, Elycia; Wieczorek, John; Buttigieg, Pier Luigi.
Afiliação
  • Meyer R; Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Reserach, Bremerhaven, Germany Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Reserach Bremerhaven Germany.
  • Appeltans W; Max Planck Institute for Marine Microbiology, Bremen, Germany Max Planck Institute for Marine Microbiology Bremen Germany.
  • Duncan WD; University of Bremen, Faculty of Geosciences, Bremen, Germany University of Bremen, Faculty of Geosciences Bremen Germany.
  • Dimitrova M; Intergovernmental Oceanographic Commission of UNESCO, Ocean Biodiversity Information System (OBIS), Oostende, Belgium Intergovernmental Oceanographic Commission of UNESCO, Ocean Biodiversity Information System (OBIS) Oostende Belgium.
  • Gan YM; University of Florida, Gainesville, United States of America University of Florida Gainesville United States of America.
  • Stjernegaard Jeppesen T; Bulgarian Academy of Sciences, Sofia, Bulgaria Bulgarian Academy of Sciences Sofia Bulgaria.
  • Mungall C; Pensoft Publishers, Sofia, Bulgaria Pensoft Publishers Sofia Bulgaria.
  • Paul DL; Royal Belgian Institute of Natural Sciences, Brussels, Belgium Royal Belgian Institute of Natural Sciences Brussels Belgium.
  • Provoost P; Global Biodiversity Information Facility (GBIF), Copenhagen, Denmark Global Biodiversity Information Facility (GBIF) Copenhagen Denmark.
  • Robertson T; Lawrence Berkeley National Laboratory, National Microbiome Data Collaborative (NMDC), Berkeley, United States of America Lawrence Berkeley National Laboratory, National Microbiome Data Collaborative (NMDC) Berkeley United States of America.
  • Schriml L; University of Illinois, Illinois Natural History Survey, Species File Group, Champaign-Urbana, United States of America University of Illinois, Illinois Natural History Survey, Species File Group Champaign-Urbana United States of America.
  • Suominen S; Intergovernmental Oceanographic Commission of UNESCO, Ocean Biodiversity Information System (OBIS), Oostende, Belgium Intergovernmental Oceanographic Commission of UNESCO, Ocean Biodiversity Information System (OBIS) Oostende Belgium.
  • Walls R; Global Biodiversity Information Facility (GBIF), Copenhagen, Denmark Global Biodiversity Information Facility (GBIF) Copenhagen Denmark.
  • Sweetlove M; Department of Epidemiology and Public Health, University of Maryland School of Medicine, Baltimore, MD, USA, Baltimore, United States of America Department of Epidemiology and Public Health, University of Maryland School of Medicine, Baltimore, MD, USA Baltimore United States of America.
  • Ung V; Intergovernmental Oceanographic Commission of UNESCO, Ocean Biodiversity Information System (OBIS), Oostende, Belgium Intergovernmental Oceanographic Commission of UNESCO, Ocean Biodiversity Information System (OBIS) Oostende Belgium.
  • Van de Putte A; Critical Path Institute, Tucson, United States of America Critical Path Institute Tucson United States of America.
  • Wallis E; Royal Belgian Institute of Natural Sciences, Brussels, Belgium Royal Belgian Institute of Natural Sciences Brussels Belgium.
  • Wieczorek J; UMR 7205 CNRS-MNHN-SU-EPHE-UA, Paris, France UMR 7205 CNRS-MNHN-SU-EPHE-UA Paris France.
  • Buttigieg PL; Royal Belgian Institute of Natural Sciences, Université Libre de Bruxelles, Brussels, Belgium Royal Belgian Institute of Natural Sciences, Université Libre de Bruxelles Brussels Belgium.
Biodivers Data J ; 11: e112420, 2023.
Article em En | MEDLINE | ID: mdl-37829294
The standardization of data, encompassing both primary and contextual information (metadata), plays a pivotal role in facilitating data (re-)use, integration, and knowledge generation. However, the biodiversity and omics communities, converging on omics biodiversity data, have historically developed and adopted their own distinct standards, hindering effective (meta)data integration and collaboration. In response to this challenge, the Task Group (TG) for Sustainable DwC-MIxS Interoperability was established. Convening experts from the Biodiversity Information Standards (TDWG) and the Genomic Standards Consortium (GSC) alongside external stakeholders, the TG aimed to promote sustainable interoperability between the Minimum Information about any (x) Sequence (MIxS) and Darwin Core (DwC) specifications. To achieve this goal, the TG utilized the Simple Standard for Sharing Ontology Mappings (SSSOM) to create a comprehensive mapping of DwC keys to MIxS keys. This mapping, combined with the development of the MIxS-DwC extension, enables the incorporation of MIxS core terms into DwC-compliant metadata records, facilitating seamless data exchange between MIxS and DwC user communities. Through the implementation of this translation layer, data produced in either MIxS- or DwC-compliant formats can now be efficiently brokered, breaking down silos and fostering closer collaboration between the biodiversity and omics communities. To ensure its sustainability and lasting impact, TDWG and GSC have both signed a Memorandum of Understanding (MoU) on creating a continuous model to synchronize their standards. These achievements mark a significant step forward in enhancing data sharing and utilization across domains, thereby unlocking new opportunities for scientific discovery and advancement.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Biodivers Data J Ano de publicação: 2023 Tipo de documento: Article País de publicação: Bulgária

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Biodivers Data J Ano de publicação: 2023 Tipo de documento: Article País de publicação: Bulgária