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CyVerse: Cyberinfrastructure for open science.
Swetnam, Tyson L; Antin, Parker B; Bartelme, Ryan; Bucksch, Alexander; Camhy, David; Chism, Greg; Choi, Illyoung; Cooksey, Amanda M; Cosi, Michele; Cowen, Cindy; Culshaw-Maurer, Michael; Davey, Robert; Davey, Sean; Devisetty, Upendra; Edgin, Tony; Edmonds, Andy; Fedorov, Dmitry; Frady, Jeremy; Fonner, John; Gillan, Jeffrey K; Hossain, Iqbal; Joyce, Blake; Lang, Konrad; Lee, Tina; Littin, Shelley; McEwen, Ian; Merchant, Nirav; Micklos, David; Nelson, Andrew; Ramsey, Ashley; Roberts, Sarah; Sarando, Paul; Skidmore, Edwin; Song, Jawon; Sprinkle, Mary Margaret; Srinivasan, Sriram; Stanzione, Dan; Strootman, Jonathan D; Stryeck, Sarah; Tuteja, Reetu; Vaughn, Matthew; Wali, Mojib; Wall, Mariah; Walls, Ramona; Wang, Liya; Wickizer, Todd; Williams, Jason; Wregglesworth, John; Lyons, Eric.
Afiliação
  • Swetnam TL; The University of Arizona, Tucson, Arizona, United States of America.
  • Antin PB; The University of Arizona, Tucson, Arizona, United States of America.
  • Bartelme R; The University of Arizona, Tucson, Arizona, United States of America.
  • Bucksch A; Pivot Bio, Berkeley, California, United States of America.
  • Camhy D; The University of Arizona, Tucson, Arizona, United States of America.
  • Chism G; Graz University of Technology, Graz, Austria.
  • Choi I; The University of Arizona, Tucson, Arizona, United States of America.
  • Cooksey AM; The University of Arizona, Tucson, Arizona, United States of America.
  • Cosi M; The University of Arizona, Tucson, Arizona, United States of America.
  • Cowen C; The University of Arizona, Tucson, Arizona, United States of America.
  • Culshaw-Maurer M; The University of Arizona, Tucson, Arizona, United States of America.
  • Davey R; The University of Arizona, Tucson, Arizona, United States of America.
  • Davey S; The Carpentries, Oakland, California, United States of America.
  • Devisetty U; The Carpentries, Oakland, California, United States of America.
  • Edgin T; Earlham Institute, Norwich, United Kingdom.
  • Edmonds A; The University of Arizona, Tucson, Arizona, United States of America.
  • Fedorov D; The University of Arizona, Tucson, Arizona, United States of America.
  • Frady J; Greenlight Biosciences, Durham North Carolina, United States of America.
  • Fonner J; The University of Arizona, Tucson, Arizona, United States of America.
  • Gillan JK; The University of Arizona, Tucson, Arizona, United States of America.
  • Hossain I; ViQI Inc. Santa Barbara, California, United States of America.
  • Joyce B; The University of Arizona, Tucson, Arizona, United States of America.
  • Lang K; Texas Advanced Computing Center, Austin Texas, United States of America.
  • Lee T; The University of Arizona, Tucson, Arizona, United States of America.
  • Littin S; The University of Arizona, Tucson, Arizona, United States of America.
  • McEwen I; The University of Arizona, Tucson, Arizona, United States of America.
  • Merchant N; Know Center GmbH, Graz, Austria.
  • Micklos D; The University of Arizona, Tucson, Arizona, United States of America.
  • Nelson A; The University of Arizona, Tucson, Arizona, United States of America.
  • Ramsey A; The University of Arizona, Tucson, Arizona, United States of America.
  • Roberts S; The University of Arizona, Tucson, Arizona, United States of America.
  • Sarando P; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America.
  • Skidmore E; Boyce Thompson Institute, Ithaca, New York, United States of America.
  • Song J; The University of Arizona, Tucson, Arizona, United States of America.
  • Sprinkle MM; The University of Arizona, Tucson, Arizona, United States of America.
  • Srinivasan S; The University of Arizona, Tucson, Arizona, United States of America.
  • Stanzione D; The University of Arizona, Tucson, Arizona, United States of America.
  • Strootman JD; Texas Advanced Computing Center, Austin Texas, United States of America.
  • Stryeck S; The University of Arizona, Tucson, Arizona, United States of America.
  • Tuteja R; The University of Arizona, Tucson, Arizona, United States of America.
  • Vaughn M; Texas Advanced Computing Center, Austin Texas, United States of America.
  • Wali M; The University of Arizona, Tucson, Arizona, United States of America.
  • Wall M; Graz University of Technology, Graz, Austria.
  • Walls R; Know Center GmbH, Graz, Austria.
  • Wang L; The University of Arizona, Tucson, Arizona, United States of America.
  • Wickizer T; Greenlight Biosciences, Durham North Carolina, United States of America.
  • Williams J; Texas Advanced Computing Center, Austin Texas, United States of America.
  • Wregglesworth J; Graz University of Technology, Graz, Austria.
  • Lyons E; The University of Arizona, Tucson, Arizona, United States of America.
PLoS Comput Biol ; 20(2): e1011270, 2024 Feb.
Article em En | MEDLINE | ID: mdl-38324613
ABSTRACT
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life sciences, has played a crucial role in advancing data-driven research since the 2010s. As the technology landscape evolved with the emergence of cloud computing platforms, machine learning and artificial intelligence (AI) applications, CyVerse has enabled access by providing interfaces, Software as a Service (SaaS), and cloud-native Infrastructure as Code (IaC) to leverage new technologies. CyVerse services enable researchers to integrate institutional and private computational resources, custom software, perform analyses, and publish data in accordance with open science principles. Over the past 13 years, CyVerse has registered more than 124,000 verified accounts from 160 countries and was used for over 1,600 peer-reviewed publications. Since 2011, 45,000 students and researchers have been trained to use CyVerse. The platform has been replicated and deployed in three countries outside the US, with additional private deployments on commercial clouds for US government agencies and multinational corporations. In this manuscript, we present a strategic blueprint for creating and managing SaaS cyberinfrastructure and IaC as free and open-source software.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Inteligência Artificial Limite: Humans Idioma: En Revista: PLoS Comput Biol Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Inteligência Artificial Limite: Humans Idioma: En Revista: PLoS Comput Biol Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Estados Unidos