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Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria.
Idowu Bolade Olawoye; Paul Eniola Oluniyi; Edyth Parker; Judith Uche Oguzie; Jessica Nnenna Uwanibe; Tolulope Adeyemi Kayode; Fehintola Victoria Ajogbasile; Testimony Jesupamilerin Olumade; Philomena Eromon; Priscilla Abechi; Tope Sobajo; Chinedu Ugwu; George Uwem; Femi Ayoade; Kazeem Akano; Oluwasemilogo Oluwasekunolami Akinlo; Julie Oreoluwa Akin-John; Nicholas Oyejide; Olubukola Ayo-Ale; Benjamin Adegboyega; Grace Chizaramu Chukwu; Ayomide Adeleke; Grace Opemipo Ezekiel; Farida Brimmo; Olanrewaju Odunyemi Fayemi; Iyanuoluwa Fred-Akintunwa; Ibrahim F. Yusuf; Testimony Oluwatise Ipaye; Oluwagboadurami John; Ahmed Iluoreh Muhammad; Deborah Chisom Nwodo; Olusola Akinola Ogunsanya; Johnson Okolie; Abolade Esther Omoniyi; Iyobosa Beatrice Omwanghe; Oludayo Oluwaseyi Ope-ewe; Shobi Otitoola; Kemi Adedotun-Suleiman; Courage Philip; Mudasiru Femi Saibu; Ayotunde Elijah Sijuwola; Christabel Anamuma Terkuma; Augustine Abu; Johnson Adekunle Adeniji; Moses Olubusuyi Adewunmi; Olufemi Oluwapelumi Adeyemi; Rahaman Ahmed; Anthony Ahumibe; Anthony Nnennaya Ajayi; Olusola Akanbi; Olatunji Akande; Monilade Akinola; Afolabi Akinpelu; George Akpede; Ekanem Anieno; Antjony E. Atage; Oyeronke Ayansola; Marycelin Baba; Olajumoke Babatunde; Bamidele Soji Oderinde; Ebo Benevolence; Osiemi Blessing; Mienye Bob-Manuel; Andrew Bock-Oruma; Aire Chris; Chimaobi Chukwu; Funmi Daramola; Adomeh Donatus; Rosemay Duruihuoma; Yerumoh Edna; Matthew Ekeh; Erim Ndoma; Richard Ewah; Akinwumi Fajola; Enoch Olowatosin Fakayode; Adeola Fowotade; Galadima Gadzama; Daniel Igwe; Odia Ikponmwosa; Rafiu Olasunkanmi Isamotu; Agbukor Jacqueline; Aiyepada John; Julie Johnson Ekpo; Ibrahim Kida; Nwando Mba; Airende Micheal; Mirabeau Youtchou Tatfeng; Worbianueri Beatrice Moore-Igwe; Anietie Moses; Okonofua Naregose; Nsikak-Abasi Ntia; Ifeanyi Nwafor; Elizabeth Odeh; Ephraim Ogbaini; Kingsley Chiedozie Ojide; Sylvanus Okogbenin; Peter Okokhere; Sylvanus Okoro; Azuka Okwuraiwe; Olisa Olasunkanmi; Oluseyi Olayinka; Adesuyi Omoare; Ewean Chukwuma Omoruyi; Hannah E. Omunakwe; Emeka Onwe Ogah; Chika Onwuamah; Venatious Onyia; Akhilomen Patience; Ebhodaghe Paulson; Omiunu Racheal; Esumeh Rita; Giwa Rosemary; Joseph Shaibu; Joseph Shaibu; Ehikhametalor Solomon; Ngozi Ugwu; Collins Nwachi Ugwu; Kingsley Ukwuaja; Zara Wudiri; Nnaemeka Ndodo; Brittany Petros; Bronwyn Mcannis; Cyril Oshomah; Femi Oladiji; Katherine J. Siddle; Rosemary Audu; Babatunde Lawal Salako; Stephen Schaffner; Danny Park; Ifedayo Adetifa; Chikwe Ihekweazu; Oyewale Tomori; Anise Nkenjop Happi; Onikepe Folarin; Kristian G. Andersen; Pardis C. Sabeti; Christian Tientcha Happi.
Afiliação
  • Idowu Bolade Olawoye; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Paul Eniola Oluniyi; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Edyth Parker; The Scripps Research Institute
  • Judith Uche Oguzie; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Jessica Nnenna Uwanibe; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Tolulope Adeyemi Kayode; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Fehintola Victoria Ajogbasile; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Testimony Jesupamilerin Olumade; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Philomena Eromon; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Priscilla Abechi; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Tope Sobajo; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Chinedu Ugwu; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • George Uwem; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Femi Ayoade; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Kazeem Akano; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Oluwasemilogo Oluwasekunolami Akinlo; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Julie Oreoluwa Akin-John; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Nicholas Oyejide; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Olubukola Ayo-Ale; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Benjamin Adegboyega; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Grace Chizaramu Chukwu; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Ayomide Adeleke; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Grace Opemipo Ezekiel; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Farida Brimmo; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Olanrewaju Odunyemi Fayemi; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Iyanuoluwa Fred-Akintunwa; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Ibrahim F. Yusuf; Clinical Health manager,SPDC, Port Harcourt
  • Testimony Oluwatise Ipaye; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Oluwagboadurami John; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Ahmed Iluoreh Muhammad; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Deborah Chisom Nwodo; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Olusola Akinola Ogunsanya; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Johnson Okolie; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Abolade Esther Omoniyi; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Iyobosa Beatrice Omwanghe; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Oludayo Oluwaseyi Ope-ewe; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Shobi Otitoola; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Kemi Adedotun-Suleiman; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Courage Philip; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Mudasiru Femi Saibu; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Ayotunde Elijah Sijuwola; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Christabel Anamuma Terkuma; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Augustine Abu; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Johnson Adekunle Adeniji; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Moses Olubusuyi Adewunmi; Department of Virology, College of Medicine, University of Ibadan, Ibadan, Nigeria
  • Olufemi Oluwapelumi Adeyemi; Department of Medical Microbiology and Parasitology. Faculty of Basic Clinical Sciences. College of Health Sciences. University of Ilorin. Ilorin Nigeria
  • Rahaman Ahmed; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Anthony Ahumibe; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Anthony Nnennaya Ajayi; Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Olusola Akanbi; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Olatunji Akande; Biorepository Clinical Virology Laboratory
  • Monilade Akinola; WHO Polio Laboratory, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri
  • Afolabi Akinpelu; Nigeria Centre for Disease Control, Abuja, Nigeria
  • George Akpede; Irrua Specialist Teaching Hospital
  • Ekanem Anieno; Irrua Specialist Teaching Hospital
  • Antjony E. Atage; Molecular Laboratory, Regional Centre for Biotechnology and Bioresources Research, University of Port Harcourt
  • Oyeronke Ayansola; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Marycelin Baba; Dept. of Immunology, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri
  • Olajumoke Babatunde; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Bamidele Soji Oderinde; Dept. of Microbiology, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri
  • Ebo Benevolence; Irrua Specialist Teaching Hospital
  • Osiemi Blessing; Irrua Specialist Teaching Hospital
  • Mienye Bob-Manuel; Satellite Molecular Laboratory, Rivers State University Teaching Hospital, Port Harcourt
  • Andrew Bock-Oruma; Family Physician, SPDC, Port Harcourt
  • Aire Chris; Irrua Specialist Teaching Hospital
  • Chimaobi Chukwu; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Funmi Daramola; Clinical Health, SPDC, Port Harcourt
  • Adomeh Donatus; Irrua Specialist Teaching Hospital
  • Rosemay Duruihuoma; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Yerumoh Edna; Irrua Specialist Teaching Hospital
  • Matthew Ekeh; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Erim Ndoma; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Richard Ewah; Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Akinwumi Fajola; Regional community health, SPDC, Port Harcourt
  • Enoch Olowatosin Fakayode; Department of Public Health. Ministry of Health. Ilorin. Kwara State. Nigeria
  • Adeola Fowotade; Medical Microbiology and Parasitology Department, College of Medicine, University of Ibadan, Ibadan, Nigeria
  • Galadima Gadzama; Dept. of Medical Microbiology, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri
  • Daniel Igwe; Medical Microbiology Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Odia Ikponmwosa; Irrua Specialist Teaching Hospital
  • Rafiu Olasunkanmi Isamotu; Ministry of Health, Osun State, Nigeria
  • Agbukor Jacqueline; Irrua Specialist Teaching Hospital
  • Aiyepada John; Irrua Specialist Teaching Hospital
  • Julie Johnson Ekpo; Department of Medical Microbiology and Parasitology, University of Uyo, Akwa Ibom State
  • Ibrahim Kida; Dept. of Immunology, University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri
  • Nwando Mba; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Airende Micheal; Irrua Specialist Teaching Hospital
  • Mirabeau Youtchou Tatfeng; Department of Medical Laboratory Science, Niger Delta University, Bayelsa State, Nigeria
  • Worbianueri Beatrice Moore-Igwe; Rivers State University, Port Harcourt
  • Anietie Moses; Department of Medical Microbiology and Parasitology, University of Uyo, Akwa Ibom State
  • Okonofua Naregose; Irrua Specialist Teaching Hospital
  • Nsikak-Abasi Ntia; Occupational Health, SPDC, Port Harcourt
  • Ifeanyi Nwafor; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Elizabeth Odeh; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Ephraim Ogbaini; Irrua Specialist Teaching Hospital
  • Kingsley Chiedozie Ojide; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Sylvanus Okogbenin; Irrua Specialist Teaching Hospital
  • Peter Okokhere; Irrua Specialist Teaching Hospital
  • Sylvanus Okoro; Medical Microbiology Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Azuka Okwuraiwe; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Olisa Olasunkanmi; Biorepository Clinical Virology Laboratory
  • Oluseyi Olayinka; Department of Virology, College of Medicine, University of Ibadan, Ibadan, Nigeria
  • Adesuyi Omoare; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Ewean Chukwuma Omoruyi; Medical Microbiology and Parasitology Department, College of Medicine, University of Ibadan, Ibadan, Nigeria
  • Hannah E. Omunakwe; Satellite Molecular Laboratory, Rivers State University Teaching Hospital, Port Harcourt
  • Emeka Onwe Ogah; Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Chika Onwuamah; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Venatious Onyia; Virology Laboratory, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Akhilomen Patience; Irrua Specialist Teaching Hospital
  • Ebhodaghe Paulson; Irrua Specialist Teaching Hospital
  • Omiunu Racheal; Irrua Specialist Teaching Hospital
  • Esumeh Rita; Irrua Specialist Teaching Hospital
  • Giwa Rosemary; Irrua Specialist Teaching Hospital
  • Joseph Shaibu; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Joseph Shaibu; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Ehikhametalor Solomon; Irrua Specialist Teaching Hospital
  • Ngozi Ugwu; Haematology Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Collins Nwachi Ugwu; Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Kingsley Ukwuaja; Internal Medicine Department, Alex Ekwueme Federal University Teaching Hospital, Abakaliki, Nigeria
  • Zara Wudiri; Dept. of Community Medicine , University of Maiduguri Teaching Hospital, P.M.B. 1414, Maiduguri
  • Nnaemeka Ndodo; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Brittany Petros; Broad Institute of Harvard and MIT, Cambridge, MA, USA
  • Bronwyn Mcannis; Broad Institute of Harvard and MIT, Cambridge, MA, USA
  • Cyril Oshomah; Irrua Specialist Teaching Hospital
  • Femi Oladiji; Department of Epidemiology and Community Health, Faculty of Clinical Sciences. College of Health Sciences. University of Ilorin. Ilorin. Nigeria
  • Katherine J. Siddle; Broad Institute of Harvard and MIT, Cambridge, MA, USA
  • Rosemary Audu; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Babatunde Lawal Salako; The Nigerian Institute of Medical Research, Yaba, Lagos, Nigeria
  • Stephen Schaffner; Broad Institute of Harvard and MIT, Cambridge, MA, USA
  • Danny Park; Broad Institute of Harvard and MIT, Cambridge, MA, USA
  • Ifedayo Adetifa; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Chikwe Ihekweazu; Nigeria Centre for Disease Control, Abuja, Nigeria
  • Oyewale Tomori; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Anise Nkenjop Happi; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Onikepe Folarin; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
  • Kristian G. Andersen; The Scripps Research Institute
  • Pardis C. Sabeti; Broad Institute of Harvard and MIT, Cambridge, MA, USA
  • Christian Tientcha Happi; African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University
Preprint em En | PREPRINT-MEDRXIV | ID: ppmedrxiv-22280269
ABSTRACT
Identifying the dissemination patterns and impacts of a virus of economic or health importance during a pandemic is crucial, as it informs the public on policies for containment in order to reduce the spread of the virus. In this study, we integrated genomic and travel data to investigate the emergence and spread of the B.1.1.318 and B.1.525 variants of interest in Nigeria and the wider Africa region. By integrating travel data and phylogeographic reconstructions, we find that these two variants that arose during the second wave emerged from within Africa, with the B.1.525 from Nigeria, and then spread to other parts of the world. Our results show how regional connectivity in downsampled regions like Africa can often influence virus transmissions between neighbouring countries. Our findings demonstrate the power of genomic analysis when combined with mobility and epidemiological data to identify the drivers of transmission in the region, generating actionable information for public health decision makers in the region.
Licença
cc_by_nc_nd
Texto completo: 1 Coleções: 09-preprints Base de dados: PREPRINT-MEDRXIV Idioma: En Ano de publicação: 2022 Tipo de documento: Preprint
Texto completo: 1 Coleções: 09-preprints Base de dados: PREPRINT-MEDRXIV Idioma: En Ano de publicação: 2022 Tipo de documento: Preprint
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