SFannotation: A Simple and Fast Protein Function Annotation System
Genomics & Informatics
; : 76-78, 2014.
Article
em En
| WPRIM
| ID: wpr-41691
Biblioteca responsável:
WPRO
ABSTRACT
Owing to the generation of vast amounts of sequencing data by using cost-effective, high-throughput sequencing technologies with improved computational approaches, many putative proteins have been discovered after assembly and structural annotation. Putative proteins are typically annotated using a functional annotation system that uses extant databases, but the expansive size of these databases often causes a bottleneck for rapid functional annotation. We developed SFannotation, a simple and fast functional annotation system that rapidly annotates putative proteins against four extant databases, Swiss-Prot, TIGRFAMs, Pfam, and the non-redundant sequence database, by using a best-hit approach with BLASTP and HMMSEARCH.
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Texto completo:
1
Base de dados:
WPRIM
Assunto principal:
Biologia Computacional
/
Bases de Dados de Proteínas
/
Anotação de Sequência Molecular
Idioma:
En
Revista:
Genomics & Informatics
Ano de publicação:
2014
Tipo de documento:
Article