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1.
Nucleic Acids Res ; 50(5): 2603-2620, 2022 03 21.
Artículo en Inglés | MEDLINE | ID: mdl-35188560

RESUMEN

The Spt4-Spt5 complex is conserved and essential RNA polymerase elongation factor. To investigate the role of the Spt4-Spt5 complex in non-coding transcription during development, we used the unicellular model Paramecium tetraurelia. In this organism harboring both germline and somatic nuclei, massive transcription of the entire germline genome takes place during meiosis. This phenomenon starts a series of events mediated by different classes of non-coding RNAs that control developmentally programmed DNA elimination. We focused our study on Spt4, a small zinc-finger protein encoded in P. tetraurelia by two genes expressed constitutively and two genes expressed during meiosis. SPT4 genes are not essential in vegetative growth, but they are indispensable for sexual reproduction, even though genes from both expression families show functional redundancy. Silencing of the SPT4 genes resulted in the absence of double-stranded ncRNAs and reduced levels of scnRNAs - 25 nt-long sRNAs produced from these double-stranded precursors in the germline nucleus. Moreover, we observed that the presence of a germline-specific Spt4-Spt5m complex is necessary for transfer of the scnRNA-binding PIWI protein between the germline and somatic nucleus. Our study establishes that Spt4, together with Spt5m, is essential for expression of the germline genome and necessary for developmental genome rearrangements.


Asunto(s)
Genoma de Protozoos , Paramecium tetraurelia , Meiosis , Paramecium tetraurelia/citología , Paramecium tetraurelia/genética , Paramecium tetraurelia/crecimiento & desarrollo , ARN no Traducido/genética , Factores de Transcripción/metabolismo , Transcripción Genética
2.
J Sci Food Agric ; 103(12): 6080-6094, 2023 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-37144348

RESUMEN

BACKGROUND: The present study aimed to demonstrate the superiority of bioethanol yield and its quality from sorghum using the granular starch degrading enzyme Stargen™ 002 over simultaneous saccharification and fermentation, and separate hydrolysis and fermentation using Zymomonas mobilis CCM 3881 and Ethanol Red® yeast. RESULTS: Bacteria were found to produce ethanol at higher yield than the yeast in all fermentations. The highest ethanol yield was obtained with Z. mobilis during 48 h of simultaneous saccharification and fermentation (83.85% theoretical yield) and fermentation with Stargen™ 002 (81.27% theoretical yield). Pre-liquefaction in fermentation with Stargen™ 002 did not improve ethanol yields for both Z. mobilis and Saccharomyces cerevisiae. Chromatographic analysis showed twice less total volatile compounds in distillates obtained after bacterial (3.29-5.54 g L-1 ) than after yeast (7.84-9.75 g L-1 ) fermentations. Distillates obtained after bacterial fermentation were characterized by high level of aldehydes (up to 65% of total volatiles) and distillates obtained after yeast fermentation of higher alcohols (up to 95% of total volatiles). The process of fermentation using granular starch hydrolyzing enzyme cocktail Stargen™ 002 resulted in low amounts of all volatile compounds in distillates obtained after bacterial fermentation, but the highest amounts in distillates obtained after yeast fermentation. CONCLUSION: The present study emphasizes the great potential of bioethanol production from sorghum with Z. mobilis using granular starch hydrolyzing enzyme Stargen™ 002, which leads to reduced water and energy consumption, especially when energy sources are strongly related to global climate change. © 2023 Society of Chemical Industry.


Asunto(s)
Sorghum , Zymomonas , Saccharomyces cerevisiae , Etanol , Fermentación , Almidón
3.
Cytokine ; 150: 155780, 2022 02.
Artículo en Inglés | MEDLINE | ID: mdl-34896730

RESUMEN

OBJECTIVE: Paroxysmal nocturnal hemoglobinuria (PNH) is a clonal non-malignant disease in which hematopoietic cell apoptosis may play an important pathophysiological role. Previous studies of the content of phosphatidylinositol (3,4,5)-trisphosphate (PI(3,4,5)P3) indicated the possibility of remote transmission of anti-apoptotic signals between pathological and normal hematopoietic progenitors. METHODS: The study determined the plasma levels of beta chemokines and cytokines in N = 19 patients with PNH and 31 healthy controls. The research material was peripheral blood plasma (EDTA) stored at -80 °C until the test. Beta chemokine and cytokine concentrations were tested in duplicate with Bio-Plex Pro Human Cytokine Assay (Bio-Rad, Hercules, CA, USA) using a Luminex 200 flow cytometer and xPONENT software (Luminex Corporation, Austin, TX, USA). In peripheral blood CD34+ cells we tested the proportions of PI(3,4,5)P3+ and Annexin binding apoptotic phenotype using FC and phosflow. RESULTS: Compared to the control group, the PNH group showed a significant increase in the plasma concentration of some beta chemokines and cytokines, including MIP-1alpha/CCL3, eotaxin/CCL11, MCP1/CCL2, IL4 and G-CSF. In the group of PNH patients, a significant decrease in the concentration of some cytokines was also observed: RANTES/CCL5, MIP-1beta/CCL4, PDGF-BB and IL9. At the same time, the plasma concentrations of the chemokine IP-10/CXCL10 and the cytokines IFN-gamma, TNF, IL6 and IL10 showed no significant deviations from the values for the control group. Anti-apoptotic phenotype and phosphatidylinositol (3,4,5)-trisphosphate content in PNH clone of CD34+ cells were associated with the level of CCL3 and negatively associated with CCL5, CCL4, PDGF-BB and IL9. CONCLUSIONS: This data suggest the existence of apoptotic and PI(3,4,5)P3 imbalance in PNH CD34+ cells driven by anti-apoptotic cytokine biosignature in PNH. Plasma cytokines and intracellular enzymes that regulate the phosphoinositide pathways may become a therapeutic target in PNH.


Asunto(s)
Hemoglobinuria Paroxística , Antiinflamatorios , Quimiocinas , Quimiocinas CC , Citocinas , Hemoglobinuria Paroxística/genética , Hemoglobinuria Paroxística/patología , Humanos
4.
Molecules ; 25(2)2020 Jan 13.
Artículo en Inglés | MEDLINE | ID: mdl-31941126

RESUMEN

The bioremediation of areas contaminated with hydrocarbon compounds and heavy metals is challenging due to the synergistic toxic effects of these contaminants. On the other hand, the phenomenon of the induction of microbial secretion of exopolysaccharides (EPS) under the influence of heavy metals may contribute to affect the interaction between hydrophobic hydrocarbons and microbial cells, thus increasing the bioavailability of hydrophobic organic pollutants. The purpose of this study was to analyze the impact of heavy metals on the changes in the metapopulation structure of an environmental consortium, with particular emphasis on the number of copies of orthologous genes involved in exopolysaccharide synthesis pathways and the biodegradation of hydrocarbons. The results of the experiment confirmed that the presence of heavy metals at concentrations of 50 mg·L-1 and 150 mg·L-1 resulted in a decrease in the metabolic activity of the microbial consortium and its biodiversity. Despite this, an increase in the biological degradation rate of polycyclic aromatic hydrocarbons was noted of 17.9% and 16.9%, respectively. An assessment of the estimated number of genes crucial for EPS synthesis and biodegradation of polycyclic aromatic hydrocarbons confirmed the relationship between the activation of EPS synthesis pathways and polyaromatic hydrocarbon biodegradation pathways. It was established that microorganisms that belong to the Burkholderiales order are characterized by a high representation of the analyzed orthologs and high application potential in areas contaminated with heavy metals and hydrocarbons.


Asunto(s)
Biodiversidad , Burkholderia/metabolismo , Metales Pesados/farmacología , Consorcios Microbianos , Hidrocarburos Policíclicos Aromáticos/metabolismo , Biodegradación Ambiental , Metales Pesados/metabolismo
5.
Pol Merkur Lekarski ; 48(284): 97-99, 2020 Apr 22.
Artículo en Polaco | MEDLINE | ID: mdl-32352939

RESUMEN

Ventricular arrhythmias, including tachycardia and ventricular fibrillation are often a dangerous consequence other co-existing conditions in the phase of their destabilization. Causal and symptomatic treatment diseases such as: ischemic heart disease, cardiac insufficiency, hyperthyroidism, or cancer, can be effectively stabilized without necessity for the implantation of cardioverter-defibrillator (ICD). CASE REPORT: The 62-year-old patient was admitted to the cardiology department after a second episode of unconsciousness last week due to recurrent VT. Despite many diagnostic difficulties, the possibility of effective conservative treatment has been demonstrated.


Asunto(s)
Desfibriladores Implantables , Taquicardia Ventricular , Muerte Súbita Cardíaca , Cardioversión Eléctrica , Humanos , Persona de Mediana Edad , Resultado del Tratamiento , Fibrilación Ventricular
6.
Int J Immunogenet ; 46(4): 217-231, 2019 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-31210416

RESUMEN

Natural killer (NK) cells make vital contributions to the immune system and the reproductive system. Notably, NK cells of donor origin can recognize and kill residual leukaemic cells and cure malignant patients in hematopoietic stem cell (HSC) transplant setting. NK cell function is regulated by KIRs that recognize cognate HLA class I molecules on target cells, depending on their amino acid residues. In review, we addressed the question of binding capacity and avidity of HLA class I molecules to different killer cell immunoglobulin-like receptors (KIRs) depending on all interacting amino acid residues both on HLA and KIR side. We searched PubMed database and analysed available HLA:KIR crystallographic data for amino acid residues in HLA molecules, those physically involved in binding KIRs (termed here the "entire KIR interface"). Within entire KIR interface, we selected five functional sequence motifs (14-19, 66-76, 77-84, 88-92 and 142-151) and classified them according to the conservation of their amino acid sequences among 8,942 HLA class I molecules. Although some conserved amino acid motifs were shared by different groups of KIR ligands, the HLA motif combinations were exclusive for the ligand groups. In 135 common HLA class I molecules with known HLA:KIR recognition, we found 54 combinations of five motifs in each of the KIR-binding interfaces (C1, C2, Bw4, A3/11) and conserved non-KIR-binding interfaces. Based on the entire KIR interface, this analysis allowed to classify 8,942 HLA class I molecules into KIR specificity groups. This functional and evolutionary classification of entire KIR interfaces provides a tool for unambiguously predicting HLA:KIR interactions for common and those HLA molecules that have not yet been functionally tested. Considering the entire KIR interface in HLA class I molecules, functional interactions of HLA and KIR can be predicted in immune responses, reproduction and allotransplantation. Further functional studies are needed on the HLA:KIR interaction variations caused by the repertoires of peptides presented by HLA molecules and KIR polymorphisms at allelic level.


Asunto(s)
Secuencias de Aminoácidos/genética , Células Asesinas Naturales/inmunología , Receptores KIR/genética , Secuencias de Aminoácidos/inmunología , Secuencia de Aminoácidos , Antígenos HLA-C/genética , Antígenos HLA-C/inmunología , Antígenos de Histocompatibilidad Clase I/genética , Humanos , Ligandos , Polimorfismo Genético , Receptores KIR/inmunología
7.
Nucleic Acids Res ; 45(8): 4722-4732, 2017 05 05.
Artículo en Inglés | MEDLINE | ID: mdl-28053118

RESUMEN

Spt5 is a conserved and essential transcriptional regulator that binds directly to RNA polymerase and is involved in transcription elongation, polymerase pausing and various co-transcriptional processes. To investigate the role of Spt5 in non-coding transcription, we used the unicellular model Paramecium tetraurelia. In this ciliate, development is controlled by epigenetic mechanisms that use different classes of non-coding RNAs to target DNA elimination. We identified two SPT5 genes. One (STP5v) is involved in vegetative growth, while the other (SPT5m) is essential for sexual reproduction. We focused our study on SPT5m, expressed at meiosis and associated with germline nuclei during sexual processes. Upon Spt5m depletion, we observed absence of scnRNAs, piRNA-like 25 nt small RNAs produced at meiosis. The scnRNAs are a temporal copy of the germline genome and play a key role in programming DNA elimination. Moreover, Spt5m depletion abolishes elimination of all germline-limited sequences, including sequences whose excision was previously shown to be scnRNA-independent. This suggests that in addition to scnRNA production, Spt5 is involved in setting some as yet uncharacterized epigenetic information at meiosis. Our study establishes that Spt5m is crucial for developmental genome rearrangements and necessary for scnRNA production.


Asunto(s)
Meiosis/genética , Reproducción/genética , Transcripción Genética , Factores de Elongación Transcripcional/genética , Epigénesis Genética , Regulación de la Expresión Génica/genética , Reordenamiento Génico/genética , Genoma , Paramecium tetraurelia/genética
8.
Int J Mol Sci ; 20(3)2019 Jan 28.
Artículo en Inglés | MEDLINE | ID: mdl-30696053

RESUMEN

Infection with cytomegalovirus (CMV) remains a major problem in kidney transplant recipients, resulting in serious infectious complications and occasionally mortality. Accumulating evidence indicates that natural killer cell immunoglobulin-like receptors (KIRs) and their ligands affect the susceptibility to various diseases, including viral infections (e.g., CMV infection). We investigated whether KIR genes and their ligands affect the occurrence of CMV infection in a group of 138 kidney transplant recipients who were observed for 720 days posttransplantation. We typed the recipients for the presence of KIR genes (human leukocyte antigen C1 [HLA-C1], HLA-C2, HLA-A, HLA-B, and HLA-DR1) by polymerase chain reaction with sequence-specific primers. The multivariate analysis revealed that the lack of KIR2DS2 (p = 0.035), the presence of KIR2DL3 (p = 0.075), and the presence of KIR2DL2⁻HLA-C1 (p = 0.044) were risk factors for posttransplant CMV infection. We also found that a lower estimated glomerular filtration rate (p = 0.036), an earlier time of antiviral prophylaxis initiation (p = 0.025), lymphocytopenia (p = 0.012), and pretransplant serostatus (donor-positive/recipient-negative; p = 0.042) were independent risk factors for posttransplant CMV infection. In conclusion, our findings confirm that the KIR/HLA genotype plays a significant role in anti-CMV immunity and suggest the contribution of both environmental and genetic factors to the incidence of CMV infection after kidney transplantation.


Asunto(s)
Infecciones por Citomegalovirus/genética , Antígenos HLA-C/metabolismo , Trasplante de Riñón , Receptores KIR/metabolismo , Adulto , Anciano , Femenino , Frecuencia de los Genes , Marcadores Genéticos , Genotipo , Haplotipos/genética , Humanos , Estimación de Kaplan-Meier , Masculino , Persona de Mediana Edad , Factores de Riesgo , Adulto Joven
9.
Molecules ; 24(12)2019 Jun 24.
Artículo en Inglés | MEDLINE | ID: mdl-31238569

RESUMEN

l-3,4-dihydroxyphenylalanine (l-DOPA) is a medically relevant compound in Parkinson's disease therapy. Several extraction methods of l-DOPA from beans, including velvet and faba beans, have been described in the literature. However, these methods require the use of strong acids, long extraction times, or complex downstream processing, which makes the extraction of l-DOPA expensive and energy-demanding, limiting its industrial application. In addition, the stability of l-DOPA during the extraction process is critical, further complicating the extraction of adequate amounts of this amino acid. This work is the first report on a simple, rapid, greener, and robust extraction method of l-DOPA. The developed method consists of a quick homogenization step followed by a double extraction with 0.2% v/v acetic acid for 20 min and was applied to faba bean at a ratio of 1:25 with respect to the extracting solvent. This study also investigated the stability of l-DOPA during extraction and thermal treatment. The proposed method demonstrated to be robust and extraordinarily efficient for numerous cultivars of faba bean, velvet bean, and food products containing faba beans.


Asunto(s)
Fraccionamiento Químico , Levodopa/aislamiento & purificación , Fraccionamiento Químico/métodos , Árboles de Decisión , Concentración de Iones de Hidrógeno , Levodopa/química , Estructura Molecular , Reproducibilidad de los Resultados , Solventes , Flujo de Trabajo
10.
J Sci Food Agric ; 99(14): 6307-6314, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31260113

RESUMEN

BACKGROUND: Pulque bread is a traditional Mexican product obtained by fermentation using microflora present only in pulque. In this study, the possibility of creating a pulque microbial consortium under laboratory conditions and its applications were evaluated. A laboratory-made consortium was compared with a consortium originating in Mexico in bread and pulque production. They were tested in various growth medium systems: pulque made from agave sap and malt extract, Mexican wheat and rye pulque bread, and European wheat and rye bread. RESULTS: Depending on the growth medium, consortiums showed differing influence on many factors, such as specific volume, weight loss after baking, soluble proteins, and crust and crumb color. Indigenous starters increased sensorial acceptance of pulque and Mexican rye bread, decreased pH, and increased titratable acidity of the breads at the highest level whereas laboratory consortia improved sensory acceptance of wheat breads. The laboratory-prepared starter in some cases improved antiradical activity. All pulques received similar consumer evaluations. However, malt pulque was the least appreciated beverage. CONCLUSION: The results show the possibility of creating a pulque microbial consortium under laboratory conditions. Depending on the flour type and the breadmaking technique, the use of a particular microbial consortium allowed modification of certain physicochemical parameters. In conclusion, it is feasible to modify bread parameters to obtain features corresponding to consumer demands by using an appropriate microflora, pulque, or flour type. Moreover, this research describes, for the first time, the use of rye malt for pulque and rye flour for pulque bread preparation as raw materials. © 2019 Society of Chemical Industry.


Asunto(s)
Bacterias/metabolismo , Pan/microbiología , Consorcios Microbianos , Agave/metabolismo , Agave/microbiología , Bacterias/clasificación , Bacterias/genética , Bacterias/aislamiento & purificación , Pan/análisis , Fermentación , Harina/análisis , Harina/microbiología , Manipulación de Alimentos , Humanos , México , Secale/metabolismo , Secale/microbiología , Gusto , Triticum/metabolismo , Triticum/microbiología
11.
PLoS Genet ; 11(7): e1005383, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-26177014

RESUMEN

Because of their nuclear dimorphism, ciliates provide a unique opportunity to study the role of non-coding RNAs (ncRNAs) in the communication between germline and somatic lineages. In these unicellular eukaryotes, a new somatic nucleus develops at each sexual cycle from a copy of the zygotic (germline) nucleus, while the old somatic nucleus degenerates. In the ciliate Paramecium tetraurelia, the genome is massively rearranged during this process through the reproducible elimination of repeated sequences and the precise excision of over 45,000 short, single-copy Internal Eliminated Sequences (IESs). Different types of ncRNAs resulting from genome-wide transcription were shown to be involved in the epigenetic regulation of genome rearrangements. To understand how ncRNAs are produced from the entire genome, we have focused on a homolog of the TFIIS elongation factor, which regulates RNA polymerase II transcriptional pausing. Six TFIIS-paralogs, representing four distinct families, can be found in P. tetraurelia genome. Using RNA interference, we showed that TFIIS4, which encodes a development-specific TFIIS protein, is essential for the formation of a functional somatic genome. Molecular analyses and high-throughput DNA sequencing upon TFIIS4 RNAi demonstrated that TFIIS4 is involved in all kinds of genome rearrangements, including excision of ~48% of IESs. Localization of a GFP-TFIIS4 fusion revealed that TFIIS4 appears specifically in the new somatic nucleus at an early developmental stage, before IES excision. RT-PCR experiments showed that TFIIS4 is necessary for the synthesis of IES-containing non-coding transcripts. We propose that these IES+ transcripts originate from the developing somatic nucleus and serve as pairing substrates for germline-specific short RNAs that target elimination of their homologous sequences. Our study, therefore, connects the onset of zygotic non coding transcription to the control of genome plasticity in Paramecium, and establishes for the first time a specific role of TFIIS in non-coding transcription in eukaryotes.


Asunto(s)
Genoma , ARN Largo no Codificante/genética , Transcripción Genética , Factores de Elongación Transcripcional/genética , Linaje de la Célula , Células Germinativas , Secuenciación de Nucleótidos de Alto Rendimiento , Paramecium tetraurelia/genética , ARN Polimerasa II/genética
12.
Molecules ; 23(10)2018 Oct 06.
Artículo en Inglés | MEDLINE | ID: mdl-30301219

RESUMEN

The effects of different malolactic bacteria fermentation techniques on the bioconversion of aromatic compounds in cool-climate grape wines were examined. During three wine seasons, red and white grape wines were produced using various malolactic fermentation induction techniques: Coinoculation, sequential inoculation, and spontaneous process. Volatile compounds (diacetyl and the products of its metabolism, and selected ethyl fatty acid esters) were extracted by solid phase microextraction. Compounds were identified with a multidimensional gas chromatograph-GC × GC-ToFMS with ZOEX cryogenic (N2) modulator. Sensory evaluation of the wines was also performed. It was found that the fermentation-derived metabolites studied were affected by the malolactic bacteria inoculation regime. Quantitatively, ethyl lactate, diethyl succinate, and ethyl acetate dominated as esters with the largest increase in content. The total concentration of ethyl esters was highest for the coinoculation technique, while the highest concentration of diacetyl was noted for the spontaneous technique. Controlled malolactic fermentation, especially using the coinoculation technique, can be proposed as a safe and efficient enological practice for producing quality cool-climate grape wines enriched with fruity, fresh, and floral aromas.


Asunto(s)
Ésteres/química , Malato Deshidrogenasa/química , Vitis/química , Compuestos Orgánicos Volátiles/química , Cromatografía de Gases , Clima Frío , Diacetil/metabolismo , Ésteres/metabolismo , Fermentación , Malato Deshidrogenasa/metabolismo , Malatos/metabolismo , Odorantes/análisis , Vitis/metabolismo , Compuestos Orgánicos Volátiles/metabolismo , Vino/análisis
13.
Plant Foods Hum Nutr ; 73(3): 196-202, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-29948608

RESUMEN

The increasing demand for cocoa and search for ingredients rich in bioactive compounds encouraged us to investigate the possibility of replacing it by carob powder in the muffins containing soy beans, sesame oil and flaxseeds. There was 5% addition of carob or cocoa powder to the individual doughs. The muffins with the addition of carob were characterized by improved antiradical activity (by 36% - 2,2'-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) method, by 83% - 2,2-diphenyl-1-picrylhydrazyl (DPPH) method), higher content of genistein (18%) and total phytosterols (17%) in the dry mass. The color differences in the carob muffins crusts were not perceptible by consumers (ΔE = 0.70 for crust, ΔE = 5.6 for crumb) and their taste was found to be less bitter and sweeter than the taste of cocoa muffins. Moreover, the addition of carob powder as well as cocoa powder resulted in good sensory quality. The high content of phytosterols, genistein and improved antiradical properties proved carob to be a source of bioactive compounds. The results show that carob powder may be used as valuable alternative muffin ingredient to cocoa.


Asunto(s)
Cacao/química , Chocolate/análisis , Galactanos/química , Mananos/química , Fitosteroles/análisis , Gomas de Plantas/química , Fenómenos Químicos , Color , Alimentos , Radicales Libres/análisis , Humanos , Isoflavonas/análisis , Gusto , Tocoferoles/análisis
14.
Pol Merkur Lekarski ; 44(259): 36-40, 2018 Jan 23.
Artículo en Polaco | MEDLINE | ID: mdl-29374422

RESUMEN

Keratoprosthesis is a chance for all patients who have bilateral visual loss due to corneal pathology so serious and extensive that it cannot be removed by graft transplantation. This problem mainly affects less developed countries. The eyesight of these patients could return to normal if corneal transplants were practiced and keratoprosthesis were widely available. Keratoplasty makes great progress and gets better and better results. The future will show whether there will be more reliable and biologically integrated keratoprosthesis, with low risk of complications.


Asunto(s)
Córnea , Prótesis e Implantes , Enfermedades de la Córnea/terapia , Humanos
15.
J Sci Food Agric ; 97(2): 659-668, 2017 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-27144959

RESUMEN

BACKGROUND: Knowledge regarding microaerophilic and anaerobic specific spoilage organisms (SSOs) is crucial for an appropriate evaluation of vacuum-packed ham. The objective of this study was to characterize the SSO community in vacuum-packed ham by a culture-dependent technique and MiSeq next-generation sequencing (NGS) platform. The relation between changes among the SSO group in the ham and changes in sensory characteristics of the product was also assessed. RESULTS: In the study, conventional microbiological analyses were employed in order to establish the participation of several groups of microorganisms in the deterioration of vacuum-packed ham. The diversity of the SSO group in the product was further assessed with the use of MiSeq NGS technology. The bacteria identified in sliced cooked ham belonged mostly to four phyla, namely Actinobacteria, Proteobacteria, Firmicutes and Bacteroidetes. A temperature of 4 °C favoured the development of mesophilic and psychrophilic/psychrotrophic flora, mainly Lactobacillaceae, Enterobacteriaceae and Micrococcaceae families. A high ratio of Brochothrix thermosphacta species and new, cold-tolerant Clostridium spp. was also observed. The growth of these microorganisms facilitated changes in the pH value and organoleptic characteristics of the product. CONCLUSION: This study confirms that the combination of culturing and MiSeq NGS technology improves the microbial evaluation of food. © 2016 Society of Chemical Industry.


Asunto(s)
Enterobacteriaceae/crecimiento & desarrollo , Embalaje de Alimentos , Conservación de Alimentos , Almacenamiento de Alimentos , Lactobacillaceae/crecimiento & desarrollo , Carne/microbiología , Micrococcaceae/crecimiento & desarrollo , Animales , Biología Computacional , Enterobacteriaceae/clasificación , Enterobacteriaceae/aislamiento & purificación , Comida Rápida/análisis , Comida Rápida/microbiología , Calidad de los Alimentos , Secuenciación de Nucleótidos de Alto Rendimiento , Humanos , Concentración de Iones de Hidrógeno , Lactobacillaceae/clasificación , Lactobacillaceae/aislamiento & purificación , Carne/análisis , Fenómenos Mecánicos , Micrococcaceae/clasificación , Micrococcaceae/aislamiento & purificación , Tipificación Molecular , Polonia , Análisis de Componente Principal , Refrigeración , Sensación , Sus scrofa , Vacio
16.
Pol J Microbiol ; 66(3): 345-352, 2017 Sep 27.
Artículo en Inglés | MEDLINE | ID: mdl-29319531

RESUMEN

The aim of the studies was to compare the composition of soil bacterial metabiomes originating from urbanized areas and areas con¬taminated with hydrocarbons with those from agricultural soil and forest soil obtained from a protected wild-life park area. It should be noted that hydrocarbons are everywhere therefore bacteria capable of their utilization are present in every soil type. In the hydrocarbon-contaminated soil and in the soil of anthropogenic origin, the bacteria belonging to Gammaproteobacteria were dominant (28.4-36.6%), whereas in the case of agricultural soil and protected wild-life park soil their ratios decreased (22.8-23.0%) and were similar to that of Alphaproteobacteria. No statistically significant changes were observed in terms of the Operational Taxonomic Unit identified in the studies soils, however, based on the determined alpha-diversity it can be established that contaminated soils were characterized by lower biodiversity indices compared to agricultural and forest soils. Furthermore, the dioxygenase level was also evaluated in the studied soils, which are genes encoding crucial enzymes for the decomposition of mono- and polycyclic aromatic hydrocarbons during the biodegradation of diesel oil (PAHRHDαGN, PAHRHDαGP, xylE, Cat 2,3, ndoB). It was concluded that both the population structure of the soil metabiome and the number of genes crucial for biodegradation processes differed significantly between the soils. The level of analysed genes showed a similar trend, as their highest number in relations to genes encoding 16S RNA was determined in urban and hydrocarbon-contaminated soil.


Asunto(s)
Alphaproteobacteria/genética , Alphaproteobacteria/metabolismo , Biodegradación Ambiental , Gammaproteobacteria/genética , Gammaproteobacteria/metabolismo , Hidrocarburos Policíclicos Aromáticos/metabolismo , Contaminantes del Suelo/metabolismo , Alphaproteobacteria/clasificación , ADN Bacteriano/genética , Dioxigenasas/análisis , Gammaproteobacteria/clasificación , Gasolina/análisis , Metagenómica , Polonia , ARN Ribosómico 16S/genética , Suelo/química , Microbiología del Suelo
17.
Pol Merkur Lekarski ; 43(258): 287-290, 2017 Dec 22.
Artículo en Polaco | MEDLINE | ID: mdl-29298970

RESUMEN

Von Recklinghausen disease is a genetic disease with autosomal dominant, belonging to the group phakomatoses. In the clinical picture of the disease are skin lesions, eye, bone, intracranial tumors and other cancers of the extracranial location. Due to the high variability of clinical symptoms often diagnosis is delayed in cases of mild expression. The prognosis depends on the location and extent of the change and only symptomatic treatment have a tendency to change regrowth.


Asunto(s)
Ojo/patología , Neurofibromatosis 1/diagnóstico , Neurofibromatosis 1/patología , Humanos
18.
Biol Blood Marrow Transplant ; 21(5): 829-39, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25617806

RESUMEN

Some cancers treated with allogeneic hematopoietic stem cell transplantation (HSCT) are sensitive to natural killer cell (NK) reactivity. NK function depends on activating and inhibitory receptors and is modified by NK education/licensing effect and mediated by coexpression of inhibitory killer-cell immunoglobulin-like receptor (KIR) and its corresponding HLA I ligand. We assessed activating KIR (aKIR)-based HLA I-dependent education capacity in donor NKs in 285 patients with hematological malignancies after HSCT from unrelated donors. We found significantly adverse progression-free survival (PFS) and time to progression (TTP) in patients who received transplant from donors with NKs educated by C1:KIR2DS2/3, C2:KIR2DS1, or Bw4:KIR3DS1 pairs (for PFS: hazard ratio [HR], 1.70; P = .0020, Pcorr = .0039; HR, 1.54; P = .020, Pcorr = .039; HR, 1.51; P = .020, Pcorr = .040; and for TTP: HR, 1.82; P = .049, Pcorr = .096; HR, 1.72; P = .096, Pcorr = .18; and HR, 1.65; P = .11, Pcorr = .20, respectively). Reduced PFS and TTP were significantly dependent on the number of aKIR-based education systems in donors (HR, 1.36; P = .00031, Pcorr = .00062; and HR, 1.43; P = .019, Pcorr = .038). Furthermore, the PFS and TTP were strongly adverse in patients with missing HLA ligand cognate with educating aKIR-HLA pair in donor (HR, 3.25; P = .00022, Pcorr = .00045; and HR, 3.82; P = .027, Pcorr = .054). Together, these data suggest important qualitative and quantitative role of donor NK education via aKIR-cognate HLA ligand pairs in the outcome of HSCT. Avoiding the selection of transplant donors with high numbers of aKIR-HLA-based education systems, especially for recipients with missing cognate ligand, is advisable.


Asunto(s)
Efecto Injerto vs Tumor/inmunología , Neoplasias Hematológicas , Trasplante de Células Madre Hematopoyéticas , Antígenos de Histocompatibilidad Clase I/inmunología , Células Asesinas Naturales/inmunología , Receptores KIR/inmunología , Donante no Emparentado , Adolescente , Adulto , Aloinjertos , Niño , Preescolar , Femenino , Efecto Injerto vs Tumor/genética , Neoplasias Hematológicas/genética , Neoplasias Hematológicas/inmunología , Neoplasias Hematológicas/terapia , Antígenos de Histocompatibilidad Clase I/genética , Prueba de Histocompatibilidad , Humanos , Lactante , Células Asesinas Naturales/patología , Masculino , Persona de Mediana Edad , Receptores KIR/genética
19.
Cytokine ; 76(2): 182-186, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25982843

RESUMEN

The present study aimed to assess the impact of the CXCL12 gene polymorphism (rs1801157) on clinical outcome of hematopoietic stem cell transplantation from unrelated donors. Toxic complications were less frequent among patients transplanted from donors carrying the CXCL12-3'-A allele (42/79 vs. 105/151, p=0.014 and 24/79 vs. 73/151, p=0.009, for grade II-IV and III-IV, respectively). Logistic regression analyses confirmed a role of donor A allele (OR=0.509, p=0.022 and OR=0.473, p=0.013 for grade II-IV and III-IV toxicity). In addition, age of recipients (OR=0.980, p=0.036 and OR=0.981, p=0.040, respectively) was independently protective while female to male transplantation and HLA compatibility were not significant. The incidence of aGvHD (grades I-IV) was lower in patients having A allele (52/119 vs. 113/204, p=0.043) and AA homozygous genotype (6/25 vs. 159/298, p=0.005). Independent associations of both genetic markers with a decreased risk of aGvHD were also seen in multivariate analyses (A allele: OR=0.591, p=0.030; AA homozygosity: OR=0.257, p=0.006) in which HLA compatibility seemed to play less protective role (p<0.1) while recipient age and donor-recipient gender relation were not significant. Moreover, CXCL12-3'-A-positive patients were less prone to early HHV-6 reactivation (2/34 vs. 19/69, p=0.026). The presence of the CXCL12-3'-A variant was found to facilitate outcome of unrelated HSCT.


Asunto(s)
Quimiocina CXCL12/genética , Trasplante de Células Madre Hematopoyéticas , Polimorfismo de Nucleótido Simple , Donante no Emparentado , Adolescente , Adulto , Factores de Edad , Alelos , Niño , Preescolar , Femenino , Genotipo , Enfermedad Injerto contra Huésped/genética , Herpesvirus Humano 6/fisiología , Prueba de Histocompatibilidad , Humanos , Lactante , Masculino , Persona de Mediana Edad , Factores Sexuales , Trasplante Homólogo , Activación Viral , Adulto Joven
20.
Pol Merkur Lekarski ; 39(230): 86-90, 2015 Aug.
Artículo en Polaco | MEDLINE | ID: mdl-26319381

RESUMEN

UNLABELLED: Ambulatory care of patients with implantable cardioverter-defibrillator (ICD) involves regular follow-up visit, where a decision on reprogramming of the device and modification of pharmacotherapy is made. AIM: The aim of the study was the assessment of frequency and reasons of reprogramming and pharmacotherapy changes in patients with dilated cardiomyopathy with an ICD implanted due to primary prevention of sudden cardiac death (SCD). MATERIALS AND METHODS: The study included 143 consecutive patients with an ICD implanted in 2010-2011. The inclusion criteria were: left ventricle ejection fraction (LVEF)≤35%, New York Heart Association (NYHA) Class≥II, implantation due to primary prevention of SCD. All ambulatory visits in outpatient department were investigated retrospectively. The following variables were analyzed: age, gender, presence of coronary artery disease (CAD) and atrial fibrillation (AF), LVEF, NYHA class, presence of interventions, reprogramming and pharmacotherapy changes. RESULTS: The most common changes in ICD parameters were modification of detection and therapy of ventricular arrhythmias. Modification of pharmacotherapy were most often referred to B-blocker and cardiac glycosides. Patients with AF had more often parameters of bradycardia pacing changed (p=0,016). There was a significant correlation between number of interventions and total number of reprogramming (r=0,3 p<0,05). A negative correlation was found between LVEF and number of reprogramming of detection of ventricular tachyarrhythmia (r=-0,18 p<0,05) and between LVEF and number of interventions (r=-0,2, p<0,05). Patients with interventions and patients AF had more pharmacotherapy changes (82 vs 29, p<0,001 and 59 vs 52, p<0,01 respectively). A significant correlation was found between number of interventions and total number of pharmacotherapy changes (r=0,5 p<0,05) and between number of interventions and modification of pharmacotherapy with B-blocker, cardiac glycosides and introduction of amiodarone therapy (r=0,47; r=0,30; r=0,32 respectively, p<0,05). CONCLUSIONS: Patients with AF had more changes in ICD parameters, pacing parameters and pharmacotherapy. Patients with lower LVEF had more interventions and more changes in detection of ventricular tachyarrhythmia.


Asunto(s)
Cardiomiopatía Dilatada/terapia , Muerte Súbita Cardíaca/prevención & control , Desfibriladores Implantables , Fibrilación Ventricular/terapia , Antagonistas Adrenérgicos beta/uso terapéutico , Anciano , Fibrilación Atrial/epidemiología , Fibrilación Atrial/fisiopatología , Glicósidos Cardíacos/uso terapéutico , Cardiomiopatía Dilatada/tratamiento farmacológico , Cardiomiopatía Dilatada/epidemiología , Comorbilidad , Enfermedad Coronaria/epidemiología , Muerte Súbita Cardíaca/epidemiología , Análisis de Falla de Equipo , Femenino , Humanos , Masculino , Prevención Primaria , Estudios Retrospectivos , Volumen Sistólico , Resultado del Tratamiento , Fibrilación Ventricular/tratamiento farmacológico , Fibrilación Ventricular/epidemiología
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