Detalhe da pesquisa
1.
A Well-Mixed E. coli Genome: Widespread Contacts Revealed by Tracking Mu Transposition.
Cell
; 180(4): 703-716.e18, 2020 02 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-32059782
2.
The dawn of virtual cell biology.
Cell
; 150(2): 248-50, 2012 Jul 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-22817888
3.
Introducing a Spectrum of Long-Range Genomic Deletions in Human Embryonic Stem Cells Using Type I CRISPR-Cas.
Mol Cell
; 74(5): 936-950.e5, 2019 06 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-30975459
4.
Distinct heterochromatin-like domains promote transcriptional memory and silence parasitic genetic elements in bacteria.
EMBO J
; 41(3): e108708, 2022 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-34961960
5.
Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior.
Annu Rev Cell Dev Biol
; 28: 363-84, 2012.
Artigo
em Inglês
| MEDLINE | ID: mdl-22559263
6.
BioLiP2: an updated structure database for biologically relevant ligand-protein interactions.
Nucleic Acids Res
; 52(D1): D404-D412, 2024 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37522378
7.
CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks.
Nat Methods
; 19(2): 195-204, 2022 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35132244
8.
Correction: Dynamic landscape of protein occupancy across the Escherichia coli chromosome.
PLoS Biol
; 20(4): e3001557, 2022 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-35476699
9.
Intracellular acidification is a hallmark of thymineless death in E. coli.
PLoS Genet
; 18(10): e1010456, 2022 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-36279294
10.
Dynamic landscape of protein occupancy across the Escherichia coli chromosome.
PLoS Biol
; 19(6): e3001306, 2021 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-34170902
11.
Genetic context effects can override canonical cis regulatory elements in Escherichia coli.
Nucleic Acids Res
; 50(18): 10360-10375, 2022 10 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-36134716
12.
LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
Nucleic Acids Res
; 50(W1): W454-W464, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35420129
13.
The leucine-responsive regulatory proteins/feast-famine regulatory proteins: an ancient and complex class of transcriptional regulators in bacteria and archaea.
Crit Rev Biochem Mol Biol
; 56(4): 373-400, 2021 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-34151666
14.
Integrating deep learning, threading alignments, and a multi-MSA strategy for high-quality protein monomer and complex structure prediction in CASP15.
Proteins
; 91(12): 1684-1703, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37650367
15.
Protein target highlights in CASP15: Analysis of models by structure providers.
Proteins
; 91(12): 1571-1599, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37493353
16.
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations.
J Chem Inf Model
; 63(15): 4664-4678, 2023 08 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-37506321
17.
Escherichia coli YigI is a Conserved Gammaproteobacterial Acyl-CoA Thioesterase Permitting Metabolism of Unusual Fatty Acid Substrates.
J Bacteriol
; 204(8): e0001422, 2022 08 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-35876515
18.
Principles of mRNA control by human PUM proteins elucidated from multimodal experiments and integrative data analysis.
RNA
; 26(11): 1680-1703, 2020 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-32753408
19.
Unique repression domains of Pumilio utilize deadenylation and decapping factors to accelerate destruction of target mRNAs.
Nucleic Acids Res
; 48(4): 1843-1871, 2020 02 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-31863588
20.
Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome.
J Proteome Res
; 20(2): 1178-1189, 2021 02 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-33393786