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1.
EMBO J ; 43(14): 2979-3008, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38839991

RESUMO

Lipid-protein interactions play a multitude of essential roles in membrane homeostasis. Mitochondrial membranes have a unique lipid-protein environment that ensures bioenergetic efficiency. Cardiolipin (CL), the signature mitochondrial lipid, plays multiple roles in promoting oxidative phosphorylation (OXPHOS). In the inner mitochondrial membrane, the ADP/ATP carrier (AAC in yeast; adenine nucleotide translocator, ANT in mammals) exchanges ADP and ATP, enabling OXPHOS. AAC/ANT contains three tightly bound CLs, and these interactions are evolutionarily conserved. Here, we investigated the role of these buried CLs in AAC/ANT using a combination of biochemical approaches, native mass spectrometry, and molecular dynamics simulations. We introduced negatively charged mutations into each CL-binding site of yeast Aac2 and established experimentally that the mutations disrupted the CL interactions. While all mutations destabilized Aac2 tertiary structure, transport activity was impaired in a binding site-specific manner. Additionally, we determined that a disease-associated missense mutation in one CL-binding site in human ANT1 compromised its structure and transport activity, resulting in OXPHOS defects. Our findings highlight the conserved significance of CL in AAC/ANT structure and function, directly tied to specific lipid-protein interactions.


Assuntos
Cardiolipinas , Translocases Mitocondriais de ADP e ATP , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae , Cardiolipinas/metabolismo , Sítios de Ligação , Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/química , Humanos , Translocases Mitocondriais de ADP e ATP/metabolismo , Translocases Mitocondriais de ADP e ATP/genética , Translocases Mitocondriais de ADP e ATP/química , Fosforilação Oxidativa , Translocador 1 do Nucleotídeo Adenina/metabolismo , Translocador 1 do Nucleotídeo Adenina/genética , Simulação de Dinâmica Molecular , Ligação Proteica , Mitocôndrias/metabolismo , Mitocôndrias/genética , Membranas Mitocondriais/metabolismo , Mutação , Mutação de Sentido Incorreto
2.
J Struct Biol ; 215(2): 107964, 2023 06.
Artigo em Inglês | MEDLINE | ID: mdl-37105277

RESUMO

Flock House virus (FHV) is an animal virus and considered a model system for non-enveloped viruses. It has a small, icosahedral capsid (T=3) and a bipartite positive-sense RNA genome. We present an extensive study of the FHV capsid dynamics from all-atom molecular dynamics simulations of the complete capsid. The simulations explore different biologically relevant conditions (neutral/low pH, with/without RNA in the capsid) using the CHARMM force field. The results show that low pH destabilizes the capsid, causing radial expansion, and RNA stabilizes the capsid. The finding of low pH destabilization is biologically relevant because the capsid is exposed to low pH in the endosome, where conformational changes occur leading to genome release. We also observe structural changes at the fivefold and twofold symmetry axes that likely relate to the externalization of membrane active γ peptides through the fivefold vertex and extrusion of RNA at the twofold axis. Simulations using the Amber force field at neutral pH are also performed and display similar characteristics to the CHARMM simulations.


Assuntos
Capsídeo , Nodaviridae , Animais , Capsídeo/química , Proteínas do Capsídeo/genética , Proteínas do Capsídeo/análise , Nodaviridae/química , Nodaviridae/genética , RNA
3.
Mol Pharm ; 20(12): 6114-6129, 2023 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-37904323

RESUMO

Mitochondrial dysfunction is implicated in nine of the ten leading causes of death in the US, yet there are no FDA-approved therapeutics to treat it. Synthetic mitochondria-targeted peptides (MTPs), including the lead compound SS-31, offer promise, as they have been shown to restore healthy mitochondrial function and treat a variety of common diseases. At the cellular level, research has shown that MTPs accumulate strongly at the inner mitochondrial membrane (IMM), slow energy sinks (e.g., proton leaks), and improve ATP production. Modulation of electrostatic fields around the IMM has been implicated as a key aspect in the mechanism of action (MoA) of these peptides; however, molecular and mechanistic details have remained elusive. In this study, we employed all-atom molecular dynamics simulations (MD) to investigate the interactions of four MTPs with lipid bilayers and calculate their effect on structural and electrostatic properties. In agreement with previous experimental findings, we observed the modulation of the membrane surface and dipole potentials by MTPs. The simulations reveal that the MTPs achieve a reduction in the dipole potential by acting to disorder both lipid head groups and water layers proximal to the bilayer surface. We also find that MTPs decrease the bilayer thickness and increase the membrane's capacitance. These changes suggest that MTPs may enhance how much potential energy can be stored across the IMM at a given transmembrane potential difference. The MTPs also displace cations away from the bilayer surface, modulating the surface potential and offering an alternative mechanism for how these MTPs reduce mitochondrial energy sinks like proton leaks and mitigate Ca2+ accumulation stress. In conclusion, this study highlights the therapeutic potential of MTPs and underlines how interactions of MTPs with lipid bilayers serve as a fundamental component of their MoA.


Assuntos
Bicamadas Lipídicas , Prótons , Bicamadas Lipídicas/química , Eletricidade Estática , Peptídeos , Mitocôndrias , Simulação de Dinâmica Molecular
4.
Langmuir ; 39(38): 13521-13533, 2023 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-37697862

RESUMO

Measurements of gas mixture adsorption equilibria at high pressures are important for assessing actual adsorbent selectivities but are often out of reach, given the challenging nature of the required experiments. Here, we report a high-pressure gravimetric binary gas adsorption equilibrium measurement system based on simultaneous gas density and mixture adsorption measurements in a single gas cell coupled to a magnetic-suspension balance. Compared to traditional techniques which rely on analytical measurements of gas composition, this approach does not require any sampling. Adsorption measurements of two gas mixtures (0.500 N2 + 0.500 CH4 and 0.400 N2 + 0.600 CO2, mole fraction) on a commercially available molecular sieve (NaY, sodium molecular sieve type Y) were carried out in the temperature range 282 to 325 K with a pressure up to 10 MPa. A prediction method for the gas mixture adsorption equilibria in a closed system using the ideal adsorbed solution theory (IAST) model was used to compare the experimental results. For binary mixtures of components with similar adsorption capacities (here N2 and CH4), the system can measure the adsorption equilibria at pressures higher than 1.0 MPa and the result agrees well with the IAST model prediction. For two gases with very different adsorption capacities, the uncertainty in the adsorption equilibrium measurement is much larger. The dominant uncertainty source is the gas density measurement, whose uncertainty could potentially be cut to half if the current titanium sinker is replaced with a sinker made of single-crystal silicon and with a larger volume.

5.
Langmuir ; 39(13): 4631-4641, 2023 Apr 04.
Artigo em Inglês | MEDLINE | ID: mdl-36958053

RESUMO

Natural gas containing trace amounts of water is frequently liquefied at conditions where aqueous solids are thermodynamically stable. However, no data are available to describe the kinetics of aqueous solid formation at these conditions. Here, we present experimental measurements of both solid formation kinetics and solid-fluid equilibrium for trace concentrations of (12 ± 0.7) ppm water in methane using a stirred, high-pressure apparatus and visual microscopy. Along isochoric pathways with cooling rates around 1 K·min-1, micron-scale aqueous solids were observed to form at subcoolings of (0.3-8.6) K, relative to an average equilibrium melting temperature of (253 ± 1.9) K at (8.9 ± 0.08) MPa; these data are consistent with predicted methane hydrate dissociation conditions within the uncertainty of both the experiment and model. The 36 measured formation events were used to construct a cumulative formation probability distribution, which was then fitted with a model from Classical Nucleation Theory, enabling the extraction of kinetic and thermodynamic nucleation parameters. While the resulting nucleation parameter values were comparable to those published for methane hydrate formation in bulk-water systems, the observed growth kinetics were distinctly different with only a small percentage of the water in the system converting into micron-scale solids over the experimental time scale. These results may help explain how cryogenic heat exchangers in liquefied natural gas facilities can operate for long periods without blockages forming despite being at very high subcoolings for aqueous solids.

6.
Phys Chem Chem Phys ; 25(25): 16807-16823, 2023 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-37309745

RESUMO

Understanding the thermophysical properties and phase behaviour of gas hydrates is essential for industrial applications ranging from energy transport and storage, CO2 capture and sequestration, to gas production from hydrates found on the seabed. Current tools for predicting hydrate equilibrium boundaries typically use van der Waals-Platteeuw-type models which are over-parameterised containing terms with limited physical basis. Here we present a new model for hydrate equilibrium calculations with 40% fewer parameters than existing tools but with equivalent accuracy, including for multicomponent gas mixtures and/or systems with thermodynamic inhibitors. By eliminating multi-layered shells from the model's conceptual basis and focusing on Kihara potential parameters for guest-water interactions specific to each hydrate cavity type, this new model provides insight into the physical chemistry governing hydrate thermodynamics. The model retains the improved description of the empty lattice developed recently by Hielscher et al. but couples the hydrate model with a Cubic-Plus-Association Equation of State (CPA-EOS) to describe fluid mixtures with many more components including inhibitors such as methanol and mono-ethylene glycol used by industry. An extensive database of over 4000 data points was used to train and evaluate the new model and compare its performance against existing tools. The absolute average deviation in temperature (AADT) achieved with the new model is 0.92 K for multicomponent gas mixtures, compared with 1.00 K for the widely-known model of Ballard and Sloan, and 0.86 K for the CPA-hydrates model implemented in the MultiFlash 7.0 software package. With fewer, more physically justified parameters, this new cage-specific model provides a robust basis for improved hydrate equilibrium predictions particularly for industrially-important, multi-component mixtures containing thermodynamic inhibitors.

8.
Anal Chem ; 94(41): 14169-14176, 2022 10 18.
Artigo em Inglês | MEDLINE | ID: mdl-36190408

RESUMO

Surface active agents (surfactants) have found a variety of critical technological applications, from helping infant lungs breathe to fugitive dust control at industrial sites. Surfactant molecules adsorb to an interface and facilitate a decrease in the surface free energy (interfacial tension) between two immiscible phases. However, a limited number of methods (e.g., holography and fluorescence microscopy) achieved visualization of surfactant molecule distribution in multiphase systems qualitatively. To probe the efficacy and/or adsorption density of surfactants at such interfaces quantitatively, we demonstrate here a direct observation of surfactant adsorption by surface-enhanced Raman scattering (SERS). This work details the development of a research platform to study surfactant adsorption using Raman imaging. The imaging and analysis were successfully benchmarked against conventional interfacial tension measurements and thermodynamic theory employed to estimate surfactant adsorption at equilibrium. This in situ Raman-based experimental method provides a platform to interrogate structure-function relationships that inform the design process for new surfactant species.


Assuntos
Cetilpiridínio , Análise Espectral Raman , Adsorção , Poeira , Humanos , Tensão Superficial , Tensoativos
9.
Chemphyschem ; 23(4): e202100794, 2022 02 16.
Artigo em Inglês | MEDLINE | ID: mdl-35043527

RESUMO

Understanding the behaviour of short-chain hydrocarbons confined to porous solids informs the targeted extraction of natural resources from geological features, and underpins rational developments in separation, storage and catalytic conversion processes. Herein, we report the application of low-field (12.7 MHz) 1 H nuclear magnetic resonance (NMR) relaxation measurements to characterise ethane dynamics within mesoporous silica materials exhibiting mean pore diameters between 6 and 50 nm. Our measurements provide NMR-based adsorption isotherms within the range 25-50 bar and at ambient temperature, incorporating the ethane condensation point (40.7 bar at our experimental temperature of 23.6 °C). The quantitative nature of the acquired data is validated via a direct comparison of NMR-derived excess adsorption capacities with ex situ gravimetric ethane adsorption measurements, which are demonstrated to agree to within 0.2 mmol g-1 of the observed ethane capacity. NMR T2 relaxation time distributions are further demonstrated as a means to decouple interparticle and mesopore dominated adsorption phenomena, with unexpectedly rapid relaxation rates associated with interparticle ethane gas confirmed via a direct comparison with NMR self-diffusion analysis.


Assuntos
Etano , Dióxido de Silício , Adsorção , Espectroscopia de Ressonância Magnética , Porosidade , Dióxido de Silício/química
10.
Environ Sci Technol ; 56(21): 15019-15033, 2022 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-36194536

RESUMO

Reduced availability of agricultural water has spurred increased interest in using recycled irrigation water for U.S. food crop production. However, there are significant knowledge gaps concerning the microbiological quality of these water sources. To address these gaps, we used 16S rRNA gene and metagenomic sequencing to characterize taxonomic and functional variations (e.g., antimicrobial resistance) in bacterial communities across diverse recycled and surface water irrigation sources. We collected 1 L water samples (n = 410) between 2016 and 2018 from the Mid-Atlantic (12 sites) and Southwest (10 sites) U.S. Samples were filtered, and DNA was extracted. The V3-V4 regions of the 16S rRNA gene were then PCR amplified and sequenced. Metagenomic sequencing was also performed to characterize antibiotic, metal, and biocide resistance genes. Bacterial alpha and beta diversities were significantly different (p < 0.001) across water types and seasons. Pathogenic bacteria, such as Salmonella enterica, Staphylococcus aureus, and Aeromonas hydrophilia were observed across sample types. The most common antibiotic resistance genes identified coded against macrolides/lincosamides/streptogramins, aminoglycosides, rifampin and elfamycins, and their read counts fluctuated across seasons. We also observed multi-metal and multi-biocide resistance across all water types. To our knowledge, this is the most comprehensive longitudinal study to date of U.S. recycled water and surface water used for irrigation. Our findings improve understanding of the potential differences in the risk of exposure to bacterial pathogens and antibiotic resistance genes originating from diverse irrigation water sources across seasons and U.S. regions.


Assuntos
Antibacterianos , Desinfetantes , Estados Unidos , RNA Ribossômico 16S/genética , Antibacterianos/farmacologia , Estudos Longitudinais , Bactérias/genética , Resistência Microbiana a Medicamentos/genética , Água , Irrigação Agrícola , Águas Residuárias , Genes Bacterianos
11.
J Biol Chem ; 295(21): 7452-7469, 2020 05 22.
Artigo em Inglês | MEDLINE | ID: mdl-32273339

RESUMO

Mitochondrial dysfunction underlies many heritable diseases, acquired pathologies, and aging-related declines in health. Szeto-Schiller (SS) peptides comprise a class of amphipathic tetrapeptides that are efficacious toward a wide array of mitochondrial disorders and are believed to target mitochondrial membranes because they are enriched in the anionic phospholipid cardiolipin (CL). However, little is known regarding how SS peptides interact with or alter the physical properties of lipid bilayers. In this study, using biophysical and computational approaches, we have analyzed the interactions of the lead compound SS-31 (elamipretide) with model and mitochondrial membranes. Our results show that this polybasic peptide partitions into the membrane interfacial region with an affinity and a lipid binding density that are directly related to surface charge. We found that SS-31 binding does not destabilize lamellar bilayers even at the highest binding concentrations; however, it did cause saturable alterations in lipid packing. Most notably, SS-31 modulated the surface electrostatics of both model and mitochondrial membranes. We propose nonexclusive mechanisms by which the tuning of surface charge could underpin the mitoprotective properties of SS-31, including alteration of the distribution of ions and basic proteins at the interface, and/or modulation of bilayer physical properties. As a proof of concept, we show that SS-31 alters divalent cation (calcium) distribution within the interfacial region and reduces the energetic burden of calcium stress in mitochondria. The mechanistic details of SS-31 revealed in this study will help inform the development of future compound variants with enhanced efficacy and bioavailability.


Assuntos
Bicamadas Lipídicas/química , Oligopeptídeos/química , Cálcio/metabolismo , Mitocôndrias/metabolismo , Saccharomyces cerevisiae/metabolismo , Eletricidade Estática
12.
Phys Chem Chem Phys ; 23(2): 971-981, 2021 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-33399149

RESUMO

Separation of nitrogen (N2) and methane (CH4) is one of the most challenging and energy-intensive processes in the natural gas industry, due to their close physico-chemical properties. The quest for an effective N2-selective adsorbent has long been the focus of research; however, the results have been sparse. In this work, a first-principle study has been used to construct and investigate Li-doped polycyclic aromatic hydrocarbons (PAHs) for N2 rejection in natural gas purification. We doped lithium on a series of linear/nonlinear PAHs consisting of two to six benzene rings. The adsorption affinity of the Li-doped organic molecular systems toward N2 and CH4 was evaluated by calculating the interaction energy using density functional theory. From the gas adsorption selectivities for different Li-doped PAHs, Li-doped phenanthrene and chrysene showed the highest N2 over CH4 equilibrium selectivities, with values of 119.7 and 80.8, respectively. It was found that the Li atom enabled the π bond of the aromatic substrate to interfere with the N2 lowest unoccupied molecular orbital, resulting in strong physisorption of N2. These results indicate the high potential of Li-doped phenanthrene and chrysene for N2 removal from natural gas.

13.
Appl Environ Microbiol ; 86(20)2020 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-32769196

RESUMO

As climate change continues to stress freshwater resources, we have a pressing need to identify alternative (nontraditional) sources of microbially safe water for irrigation of fresh produce. This study is part of the center CONSERVE, which aims to facilitate the adoption of adequate agricultural water sources. A 26-month longitudinal study was conducted at 11 sites to assess the prevalence of bacteria indicating water quality, fecal contamination, and crop contamination risk (Escherichia coli, total coliforms [TC], Enterococcus, and Aeromonas). Sites included nontidal freshwater rivers/creeks (NF), a tidal brackish river (TB), irrigation ponds (PW), and reclaimed water sites (RW). Water samples were filtered for bacterial quantification. E. coli, TC, enterococci (∼86%, 98%, and 90% positive, respectively; n = 333), and Aeromonas (∼98% positive; n = 133) were widespread in water samples tested. Highest E. coli counts were in rivers, TC counts in TB, and enterococci in rivers and ponds (P < 0.001 in all cases) compared to other water types. Aeromonas counts were consistent across sites. Seasonal dynamics were detected in NF and PW samples only. E. coli counts were higher in the vegetable crop-growing (May-October) than nongrowing (November-April) season in all water types (P < 0.05). Only one RW and both PW sites met the U.S. Food Safety Modernization Act water standards. However, implementation of recommended mitigation measures of allowing time for microbial die-off between irrigation and harvest would bring all other sites into compliance within 2 days. This study provides comprehensive microbial data on alternative irrigation water and serves as an important resource for food safety planning and policy setting.IMPORTANCE Increasing demands for fresh fruit and vegetables, a variable climate affecting agricultural water availability, and microbial food safety goals are pressing the need to identify new, safe, alternative sources of irrigation water. Our study generated microbial data collected over a 2-year period from potential sources of irrigation (rivers, ponds, and reclaimed water sites). Pond water was found to comply with Food Safety Modernization Act (FSMA) microbial standards for irrigation of fruit and vegetables. Bacterial counts in reclaimed water, a resource that is not universally allowed on fresh produce in the United States, generally met microbial standards or needed minimal mitigation. We detected the most seasonality and the highest microbial loads in river water, which emerged as the water type that would require the most mitigation to be compliant with established FSMA standards. This data set represents one of the most comprehensive, longitudinal analyses of alternative irrigation water sources in the United States.


Assuntos
Aeromonas/isolamento & purificação , Irrigação Agrícola , Enterococcus/isolamento & purificação , Escherichia coli/isolamento & purificação , Lagoas/microbiologia , Rios/microbiologia , Irrigação Agrícola/métodos , Delaware , Estudos Longitudinais , Maryland , Microbiologia da Água
14.
Langmuir ; 36(49): 14967-14977, 2020 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-33256411

RESUMO

Stepped adsorption isotherms with desorption hysteresis were measured for nitrogen, argon, ethane, carbon dioxide, and methane at pressures up to 17 MPa on zeolitic imidazolate framework-7 (ZIF-7) using a gravimetric sorption analyzer. Such stepped sorption isotherms have not been previously reported for nitrogen or argon on ZIF-7, and required the application of pressures as high as 15 MPa to trigger the ZIF-7 structural phase transition at temperatures around 360 K. The stepped hysteretic sorption isotherms measured for carbon dioxide, methane, and ethane were consistent with previous observations reported in the literature. To correlate these stepped hysteretic sorption isotherms, a semi-empirical model was developed by combining a three-parameter Langmuir equation to describe the Type I aspect of the isotherm, with a model designed to describe the temperature-dependent ZIF-7 structural phase transition. Excellent fits of the combined adsorption and desorption branches were achieved by adjusting nine parameters in the temperature-dependent model, with root-mean-square deviations within 2.5 % of the highest measured adsorption capacity. Each parameter of the new semi-empirical model has a physical basis, allowing them to be estimated or compared independently.

15.
Phys Chem Chem Phys ; 22(24): 13689-13697, 2020 Jun 24.
Artigo em Inglês | MEDLINE | ID: mdl-32525174

RESUMO

Understanding the uptake and storage of gases by microporous materials is important for our future energy security. As such, we demonstrate here the application of two-dimensional NMR relaxation experiments for probing the admission and corresponding exchange dynamics of methane within microporous zeolites. Specifically, we report low-field (12.7 MHz) 1H NMR relaxation-exchange correlation measurements of methane within commercial LTA zeolites (3A and 4A) at 25 and 35 bar and ambient temperature. Our results demonstrate the clear identification of bulk-pore and pore-pore exchange processes within zeolite 4A, facilitating the calculation and comparison of effective exchange rate dynamics across varying diffusion length scales and gas pressures. Additional data acquired for zeolite 3A reveals the sensitivity of NMR relaxation phenomena to size-exclusive gas admission phenomena, illustrating the potential of benchtop NMR protocols for material screening applications.

16.
Biochemistry ; 58(27): 2967-2977, 2019 07 09.
Artigo em Inglês | MEDLINE | ID: mdl-31246429

RESUMO

The RNA-activated protein kinase, PKR, is a key mediator of the innate immunity response to viral infection. Viral double-stranded RNAs induce PKR dimerization and autophosphorylation. The PKR kinase domain forms a back-to-back dimer. However, intermolecular ( trans) autophosphorylation is not feasible in this arrangement. We have obtained PKR kinase structures that resolves this dilemma. The kinase protomers interact via the known back-to-back interface as well as a front-to-front interface that is formed by exchange of activation segments. Mutational analysis of the front-to-front interface support a functional role in PKR activation. Molecular dynamics simulations reveal that the activation segment is highly dynamic in the front-to-front dimer and can adopt conformations conducive to phosphoryl transfer. We propose a mechanism where back-to-back dimerization induces a conformational change that activates PKR to phosphorylate a "substrate" kinase docked in a front-to-front geometry. This mechanism may be relevant to related kinases that phosphorylate the eukaryotic initiation factor eIF2α.


Assuntos
eIF-2 Quinase/química , Cristalografia por Raios X , Humanos , Simulação de Dinâmica Molecular , Fosforilação , Conformação Proteica , Domínios Proteicos , Multimerização Proteica
17.
Phys Chem Chem Phys ; 21(39): 21685-21688, 2019 Oct 09.
Artigo em Inglês | MEDLINE | ID: mdl-31552970

RESUMO

Hydrate formation was studied using water droplets acoustically levitated in high-pressure natural gas. Despite the absence of solid interfaces, the droplets' area-normalised nucleation rate was about four times faster than in steel autoclave measurements with interfacial areas roughly 200 times larger. Multiple stages of stochastic, template-free hydrate growth were observed.

18.
Environ Res ; 172: 296-300, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-30822563

RESUMO

A quenching agent is commonly added to chlorinated, reclaimed water during sample collection to prevent chlorine-mediated die-off of viable microbiota. However, the effect of quenching on downstream 16S rRNA-based bacterial community analyses is unclear. We conducted a side-by-side comparison of 16S rRNA sequencing data from reclaimed water samples quenched with sodium thiosulfate and non-quenched samples. Our data showed that 16 S rRNA processing and sequencing methods, and resulting bacterial profiles, were not negatively impacted by quenching.


Assuntos
Microbiota , Tiossulfatos , Microbiologia da Água , Biodiversidade , Sequenciamento de Nucleotídeos em Larga Escala , Microbiota/efeitos dos fármacos , Microbiota/genética , Mid-Atlantic Region , RNA Ribossômico 16S/genética , Tiossulfatos/química , Tiossulfatos/farmacologia , Água/química
19.
Environ Res ; 170: 122-127, 2019 03.
Artigo em Inglês | MEDLINE | ID: mdl-30579985

RESUMO

The quality of irrigation water used to cultivate produce that is consumed raw is an important issue with regard to food safety. In this study, the microbiological quality of potential irrigation water sources in Arizona was evaluated by testing for the presence of indicator and pathogenic bacteria. Reclaimed water samples were collected from two wastewater treatment plants and return flow samples were collected from two drainage canals and one return flow pond. Standard membrane filtration methods were used for detection of indicator bacteria. Water samples (n = 28) were filtered through cellulose ester membrane filters and bacterial populations were enumerated by placing the filters on selective agar. For detection of pathogens (Salmonella enterica, Listeria monocytogenes and Shiga toxin-producing E. coli (STEC)), water samples were filtered through Modified Moore swabs and enriched in Universal Pre-enrichment Broth, followed by selective enrichment broth for each pathogen. The enriched broth was streaked onto agar media selective for each pathogen. Presumptive colonies were confirmed by PCR/real-time PCR. Among the 14 reclaimed water samples from two sites, the ranges of recovered populations of E. coli, total coliforms, and enterococci were 0-1.3, 0.5-8.3 × 103, and 0-5.5 CFU/100 mL, respectively. No L. monocytogenes, Salmonella or STEC were found. In the 13 return flow water samples from 3 sites, the ranges of recovered populations of E. coli, total coliforms and enterococci were 1.9-5.3 × 102, 6.5 × 102-9.1 × 104, and 2.9-3.7× 103 CFU/100 mL, respectively. All samples were negative for L. monocytogenes. One (7.1%) of the return flow samples was positive for E. coli O145. Nine (64.3%) of the samples were positive for Salmonella. Both real-time PCR and culture-based methods were used for the detection of Salmonella and L. monocytogenes, and the results from the two methods were comparable. The findings of this study provide evidence that irrigation waters in Arizona, including reclaimed water and return flows, could be potential sources of bacterial contamination of produce. Additional work is needed to evaluate whether bacteria present in irrigation water sources transfer to the edible portion of irrigated plants and are capable of persisting through post-harvest activities.


Assuntos
Monitoramento Ambiental , Escherichia coli , Microbiologia da Água , Poluição da Água/análise , Arizona , Fezes , Incidência
20.
Environ Res ; 172: 630-636, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-30878734

RESUMO

The microbial quality of irrigation water has increasingly become a concern as a source of contamination for fruits and vegetables. Non-traditional sources of water are being used by more and more growers in smaller, highly diversified farms in the Mid-Atlantic region of the U.S. Shiga-toxigenic E. coli (STEC) have been responsible for several outbreaks of infections associated with the consumption of leafy greens. Our study evaluated the prevalence of the "big seven" STEC serogroups and the associated enterohemorrhagic E. coli (EHEC) virulence factors (VF) genes in conventional and nontraditional irrigation waters in the Mid-Atlantic region of the U.S. Water samples (n = 510) from 170 sampling events were collected from eight untreated surface water sites, two wastewater reclamation facilities, and one vegetable processing plant, over a 12-month period. Ten liters of water were filtered through Modified Moore swabs (MMS); swabs were then enriched into Universal Pre-enrichment Broth (UPB), followed by enrichment into non-O157 STEC R&F broth and isolation on R & F non-O157 STEC chromogenic plating medium. Isolates (n = 2489) from enriched MMS from water samples were screened for frequently reported STEC serogroups that cause foodborne illness: O26, O45, O103, O111, O121, O145, and O157, along with VF genes stx1, stx2, eae, and ehxA. Through this screening process, STEC isolates were found in 2.35% (12/510) of water samples, while 9.0% (46/510) contained an atypical enteropathogenic E. coli (aEPEC) isolate. The eae gene (n = 88 isolates) was the most frequently detected EHEC VF of the isolates screened. The majority of STEC isolates (stx1 or stx2) genes mainly came from either a pond or reclamation pond water site on two specific dates, potentially indicating that these isolates were not spatially or temporally distributed among the sampling sites. STEC isolates at reclaimed water sites may have been introduced after wastewater treatment. None of the isolates containing eae were determined to be Escherichia albertii. Our work showed that STEC prevalence in Mid-Atlantic untreated surface waters over a 12-month period was lower than the prevalence of atypical EPEC.


Assuntos
Irrigação Agrícola , Escherichia coli Enteropatogênica , Proteínas de Escherichia coli , Escherichia coli Shiga Toxigênica , Microbiologia da Água , Irrigação Agrícola/estatística & dados numéricos , Carga Bacteriana , Escherichia coli Enteropatogênica/fisiologia , Fezes/microbiologia , Mid-Atlantic Region , Prevalência , Escherichia coli Shiga Toxigênica/fisiologia
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