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1.
Nat Chem Biol ; 19(12): 1504-1512, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37443393

RESUMO

Continuous evolution can generate biomolecules for synthetic biology and enable evolutionary investigation. The orthogonal DNA replication system (OrthoRep) in yeast can efficiently mutate long DNA fragments in an easy-to-operate manner. However, such a system is lacking in bacteria. Therefore, we developed a bacterial orthogonal DNA replication system (BacORep) for continuous evolution. We achieved this by harnessing the temperate phage GIL16 DNA replication machinery in Bacillus thuringiensis with an engineered error-prone orthogonal DNA polymerase. BacORep introduces all 12 types of nucleotide substitution in 15-kilobase genes on orthogonally replicating linear plasmids with a 6,700-fold higher mutation rate than that of the host genome, the mutation rate of which is unchanged. Here we demonstrate the utility of BacORep-based continuous evolution by generating strong promoters applicable to model bacteria, Bacillus subtilis and Escherichia coli, and achieving a 7.4-fold methanol assimilation increase in B. thuringiensis. BacORep is a powerful tool for continuous evolution in prokaryotic cells.


Assuntos
DNA Polimerase Dirigida por DNA , Saccharomyces cerevisiae , DNA Bacteriano , DNA Polimerase Dirigida por DNA/metabolismo , Plasmídeos/genética , Saccharomyces cerevisiae/genética , Replicação do DNA , Bactérias/genética , Bacillus subtilis/genética , Bacillus subtilis/metabolismo
2.
Small ; 20(6): e2307645, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37770384

RESUMO

Perovskite solar cells have achieved rapid progress in the new-generation photovoltaic field, but the commercialization lags behind owing to the device stability issue under operational conditions. Ultimately, the instability issue is attributed to the soft lattice of ionic perovskite crystal. In brief, metal halide perovskite materials are susceptible to structural instability processes, including phase segregation, component loss, lattice distortion, and fatigue failure under harsh external stimuli such as high humidity, strong irradiation, wide thermal cycles, and large stress. Developing self-healing perovskites to further improve the unsatisfactory operational stability of their photoelectric devices under harsh stimuli has become a cutting-edge hotspot in this field. This self-healing behavior needs to be studied more comprehensively. Therefore, the self-healing behavior of the metal halide perovskites and photovoltaics is classified and summarized in this review. By discussing recent advances, underlying mechanisms, strategies, and existing challenges, this review provides perspectives on self-healing of perovskite solar cells in the future.

3.
Int J Mol Sci ; 22(8)2021 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-33919677

RESUMO

Platelet-rich fibrin (PRF) is a natural fibrin meshwork material with multiple functions that are suitable for tissue engineering applications. PRF provides a suitable scaffold for critical-size bone defect treatment due to its platelet cytokines and rich growth factors. However, the structure of PRF not only promotes cell attachment but also, due to its density, provides a pool for cell migration into the PRF to facilitate regeneration. In our study, we used repeated freeze drying to enlarge the pores of PRF to engineer large-pore PRF (LPPRF), a type of PRF that has expanded pores for cell migration. Moreover, a biodegradable Mg ring was used to provide stability to bone defects and the release of Mg ions during degradation may enhance osteoconduction and osteoinduction. Our results revealed that cell migration was more extensive when LPPRF was used rather than when PRF was used and that LPPRF retained the growth factors present in PRF. Moreover, the Mg ions released from the Mg ring during degradation significantly enhanced the calcium deposition of MC3T3-E1 preosteoblasts. In the present study, a bone substitute comprising LPPRF combined with a Mg ring was demonstrated to have much potential for critical-size bone defect repair.


Assuntos
Osso e Ossos/patologia , Movimento Celular/efeitos dos fármacos , Magnésio/farmacologia , Osteoblastos/citologia , Osteogênese/efeitos dos fármacos , Fibrina Rica em Plaquetas/metabolismo , Cicatrização , Animais , Osso e Ossos/efeitos dos fármacos , Cálcio/metabolismo , Diferenciação Celular/efeitos dos fármacos , Linhagem Celular , Proliferação de Células/efeitos dos fármacos , Forma Celular/efeitos dos fármacos , Sobrevivência Celular/efeitos dos fármacos , Células Cultivadas , Peptídeos e Proteínas de Sinalização Intercelular/farmacologia , Camundongos , Osteoblastos/efeitos dos fármacos , Osteoblastos/ultraestrutura , Coelhos , Alicerces Teciduais/química , Titânio/farmacologia , Cicatrização/efeitos dos fármacos
4.
Pharm Biol ; 59(1): 175-182, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-33715593

RESUMO

CONTEXT: The uric acid metabolism pathway is more similar in primates and humans than in rodents. However, there are no reports of using primates to establish animal models of hyperuricaemia (HUA). OBJECTIVES: To establish an animal model highly related to HUA in humans. MATERIALS AND METHODS: Inosine (75, 100 and 200 mg/kg) was intraperitoneally administered to adult male rhesus monkeys (n = 5/group). Blood samples were collected over 8 h, and serum uric acid (SUA) level was determined using commercial assay kits. XO and PNP expression in the liver and URAT1, OAT4 and ABCG2 expression in the kidneys were examined by qPCR and Western blotting to assess the effects of inosine on purine and uric acid metabolism. The validity of the acute HUA model was assessed using ulodesine, allopurinol and febuxostat. RESULTS: Inosine (200 mg/kg) effectively increased the SUA level in rhesus monkeys from 51.77 ± 14.48 at 0 h to 178.32 ± 14.47 µmol/L within 30 min and to peak levels (201.41 ± 42.73 µmol/L) at 1 h. PNP mRNA level was increased, whereas XO mRNA and protein levels in the liver were decreased by the inosine group compared with those in the control group. No changes in mRNA and protein levels of the renal uric acid transporter were observed. Ulodesine, allopurinol and febuxostat eliminated the inosine-induced elevation in SUA in tested monkeys. CONCLUSIONS: An acute HUA animal model with high reproducibility was induced; it can be applied to evaluate new anti-HUA drugs in vivo and explore the disease pathogenesis.


Assuntos
Modelos Animais de Doenças , Hiperuricemia/induzido quimicamente , Inosina/farmacologia , Ácido Úrico/sangue , Doença Aguda , Alopurinol/farmacologia , Animais , Relação Dose-Resposta a Droga , Febuxostat/farmacologia , Hiperuricemia/tratamento farmacológico , Hiperuricemia/fisiopatologia , Imino Furanoses/farmacologia , Inosina/administração & dosagem , Macaca mulatta , Masculino , Pirimidinonas/farmacologia , Reprodutibilidade dos Testes
5.
Molecules ; 24(5)2019 Feb 26.
Artigo em Inglês | MEDLINE | ID: mdl-30813571

RESUMO

The early diagnosis of prostate cancer is very vital for the improvement of patient survival chances. The content of prostate specific antigen (PSA) in serum is closely related to the status of the prostate cancer. We report a fluorescence bioassay, capable of detecting PSA in a non-enzymatic and label-free manner. PSA gives rise to the structural change of a hairpin, consequently triggering the hybridization chain reaction and forming a long-nicked double-helix, which is not adsorbed by graphene oxide. GelRed, as the signal indicator, then binds with dsDNA molecule, thereby producing the fluorescence. The established bioassay has the merits of simple operation, favorable cost-to-benefit ratios, good stability, and specificity. Moreover, the detection limit of this assay is as low as 10 pg/mL, and the linearity range is wide-from 100 pg/mL to 200 ng/mL. At the same time, this bioassay can realize the detection of PSA in biological samples (human serum, saliva, and urine). Therefore, the bioassay provides a potential means for the early diagnosis of prostate cancer.


Assuntos
DNA/química , Antígeno Prostático Específico/sangue , Neoplasias da Próstata/diagnóstico , Aptâmeros de Nucleotídeos/química , Detecção Precoce de Câncer , Fluorescência , Humanos , Limite de Detecção , Masculino , Neoplasias da Próstata/metabolismo
6.
Phys Chem Chem Phys ; 20(33): 21746-21754, 2018 Aug 22.
Artigo em Inglês | MEDLINE | ID: mdl-30106071

RESUMO

In recent years, great progress has been achieved in improving the power conversion efficiency (PCE) of organic-inorganic hybrid perovskite solar cells (PSCs), but the stability of PSCs is still an obstacle in their commercialization due to the limitation of efficient and stable hole transport materials. Herein, we demonstrate an alcohol-solution-based low-temperature-processed vanadium oxide (VOx) hole transport layer (HTL) for planar heterojunction PSCs. The good crystallinity and morphology of CH3NH3PbI3 grown on this amorphous VOx film is investigated by scanning electron microscopy (SEM) and X-ray diffraction (XRD) techniques. Due to the suitable and matching energy levels of VOx and CH3NH3PbI3, the holes generated in CH3NH3PbI3 can efficiently transfer to VOx HTL. Furthermore, VOx-HTL-based PSCs yield a PCE value of 14.5% with better stability in comparison with PEDOT:PSS-HTL-based PSCs. These results reveal that the low-temperature-processed VOx films can be employed as the HTL for efficient and stable PSCs.

7.
J Med Primatol ; 46(6): 352-355, 2017 12.
Artigo em Inglês | MEDLINE | ID: mdl-28744862

RESUMO

We report cryoglobulinaemia (CG) in a rhesus macaque whose serum sample was gel-like at <37°C and resolubilised upon warming. Mixed CG was diagnosed using serum protein electrophoresis and serum immunofixation electrophoresis. Renal damage and arthrophyma were observed during necropsy. This is the first report of CG in a non-human primate.


Assuntos
Crioglobulinemia/veterinária , Rim/patologia , Macaca mulatta , Doenças dos Macacos/diagnóstico , Animais , Crioglobulinemia/diagnóstico , Evolução Fatal , Masculino
8.
Sci Rep ; 14(1): 74, 2024 01 02.
Artigo em Inglês | MEDLINE | ID: mdl-38168759

RESUMO

1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) is a neurotoxin that can cause gastrointestinal ulcers by affecting dopamine levels. Therefore, MPTP has been considered a toxic substance that causes gastric ulcer disease in experimental animals. In this study, tree shrews were used as the animal model of gastric mucosa injury, and MPTP was intraperitoneally injected at a lower MPTP dosage 2 mg/kg/day for 13 weeks, while tree shrews were not injected as the control group. Under the light microscope, local congestion or diffuse bleeding points of gastric mucosa and multiple redness and swelling bleeding symptoms on the inner wall were observed in the treatment group, as well as immune cell infiltration was found in HE staining, but no such phenomenon was observed in the control group. In order to explore the molecular basis of changes in MPTP induced gastric mucosa injury, the transcriptome and proteome data of gastric mucosa were analyzed. We observed significant differences in mRNA and protein expression levels under the influence of MPTP. The changes in mRNA and proteins are related to increased immune infiltration, cellular processes and angiogenesis. More differentially expressed genes play a role in immune function, especially the candidate genes RPL4 and ANXA1 with significant signal and core role. There are also differentially expressed genes that play a role in mucosal injury and shedding, especially candidate genes GAST and DDC with certain signaling and corresponding functions. Understanding the factors and molecular basis that affect the expression of related genes is crucial for coping with Emotionality gastric mucosa injury disease and developing new treatment methods to establish the ability to resist disease.


Assuntos
Tupaia , Tupaiidae , Animais , Tupaia/genética , Musaranhos/genética , Proteômica , Análise de Sequência de RNA , RNA Mensageiro , China , Estômago
9.
Adv Mater ; 36(16): e2310444, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38100278

RESUMO

The combination of 2D and 3D perovskites to passivate surfaces or interfaces with a high concentration of defects shows great promise for improving the efficiency of perovskite solar cells (PSCs). Constructing high-quality perovskite film systems by precisely modulating 2D perovskites with good morphologies and growth sites on 3D perovskite films remains a formidable challenge due to the complexity of spacer-engineered surface reactions. In this study, phase-pure 2D (HA)2(MA)n-1PbnI3n+1 perovskites with a controlled number of layers (n) are separated on a large scale and exploited as interface rivets to optimize 3D perovskite films, resulting in tunable film structural defects and grain boundaries. The optimized PSCs system benefits from a reduction in non-radiative recombination, resulting in improved optical performance, higher mobility, and lower trap density. The corresponding device achieves a champion power conversion efficiency (PCE) of more than 25%, especially for voltage (VOC) and fill factor (FF). The quality and uniformity of the perovskite films are further confirmed using large-area devices with an active area of 14 cm2, which exhibits a PCE of more than 21.24%. The high-quality thin-film system based on the 2D perovskites presented herein provides a new perspective for improving the efficiency and stability of PSCs.

10.
Research (Wash D C) ; 7: 0309, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38390307

RESUMO

Inverted perovskite solar cells based on weakly polarized hole-transporting layers suffer from the problem of polarity mismatch with the perovskite precursor solution, resulting in a nonideal wetting surface. In addition to the bottom-up growth of the polycrystalline halide perovskite, this will inevitably worse the effects of residual strain and heterogeneity at the buried interface on the interfacial carrier transport and localized compositional deficiency. Here, we propose a multifunctional hybrid pre-embedding strategy to improve substrate wettability and address unfavorable strain and heterogeneities. By exposing the buried interface, it was found that the residual strain of the perovskite films was markedly reduced because of the presence of organic polyelectrolyte and imidazolium salt, which not only realized the halogen compensation and the coordination of Pb2+ but also the buried interface morphology and defect recombination that were well regulated. Benefitting from the above advantages, the power conversion efficiency of the targeted inverted devices with a bandgap of 1.62 eV was 21.93% and outstanding intrinsic stability. In addition, this coembedding strategy can be extended to devices with a bandgap of 1.55 eV, and the champion device achieved a power conversion efficiency of 23.74%. In addition, the optimized perovskite solar cells retained 91% of their initial efficiency (960 h) when exposed to an ambient relative humidity of 20%, with a T80 of 680 h under heating aging at 65 °C, exhibiting elevated durability.

11.
Food Funct ; 14(22): 10041-10051, 2023 Nov 13.
Artigo em Inglês | MEDLINE | ID: mdl-37843434

RESUMO

A radiation-induced brain injury (RIBI) is a major adverse event following radiotherapy of malignant tumors. RIBI would affect cognitive function, leading to a series of complications and even death. However, the pathogenesis of RIBI is still unclear, and it still lacks specific therapeutic drugs. The gut-brain bidirectional communication may be mediated by various microbiota and metabolites in the gastrointestinal tract. Probiotics are closely related to physiological health. The theory of the gut-brain axis provides us with a new idea to improve the gut microenvironment by supplementing probiotics against RIBI. Here, Lactobacillus reuteri microcapsules (LMCs) were prepared, which were predominantly irregular spheres with a rough surface under a scanning electron microscope and a narrow size distribution ranging from 20 to 700 µm. The transmission electron microscopy images showed that the structure of microcapsules containing Lactobacillus reuteri (L. reuteri) was a core and shell structure. The survival of L. reuteri in microcapsules was significantly more than that of free L. reuteri in the simulated stomach environment of pH 1.2. 16S rDNA sequencing showed that LMCs observably increased the relative abundance of Lactobacillus in RIBI mice. More importantly, compared with the RIBI model mice, the behavior of RIBI mice treated with LMCs was significantly improved. In addition, LMCs greatly alleviated the pathological damage of the hippocampus and intestines in the mice after irradiation and reduced the level of TNF-α and IL-6 in vivo. Generally, LMCs are a promising oral preparation, which provide new ideas and methods for the treatment of RIBI.


Assuntos
Lesões Encefálicas , Limosilactobacillus reuteri , Probióticos , Lesões por Radiação , Camundongos , Animais , Cápsulas , Lactobacillus , Lesões por Radiação/terapia , Encéfalo
12.
Carbohydr Polym ; 316: 121024, 2023 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-37321722

RESUMO

Clinical wound management of combined radiation and burn injury (CRBI) remains a huge challenge due to serious injuries induced by redundant reactive oxygen species (ROS), the accompanying hematopoietic, immunologic suppression and stem cell reduction. Herein, the injectable multifunctional Schiff base cross-linked with gallic acid modified chitosan (CSGA)/oxidized dextran (ODex) hydrogels were rationally designed to accelerate wound healing through elimination of ROS in CRBI. CSGA/ODex hydrogels, fabricated by mixing solutions of CSGA and Odex, displayed good self-healing ability, excellent injectability, strong antioxidant activity, and favorable biocompatibility. More importantly, CSGA/ODex hydrogels exhibited excellent antibacterial properties, which is facilitated for wound healing. Furthermore, CSGA/ODex hydrogels significantly suppressed the oxidative damage of L929 cells in an H2O2-induced ROS microenvironment. The recovery of mice with CRBI in mice demonstrated that CSGA/ODex hydrogels significantly reduced the hyperplasia of epithelial cells and the expression of proinflammatory cytokine, and accelerated wound healing which was superior to the treatment with commercial triethanolamine ointment. In conclusion, the CSGA/ODex hydrogels as a wound dressing could accelerate the wound healing and tissue regeneration of CRBI, which provides great potential in clinical treatment of CRBI.


Assuntos
Queimaduras , Quitosana , Camundongos , Animais , Quitosana/farmacologia , Quitosana/uso terapêutico , Dextranos/farmacologia , Hidrogéis/farmacologia , Hidrogéis/uso terapêutico , Peróxido de Hidrogênio , Espécies Reativas de Oxigênio , Cicatrização , Queimaduras/tratamento farmacológico , Antibacterianos/farmacologia , Antibacterianos/uso terapêutico
13.
Pharmazie ; 67(8): 695-700, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22957434

RESUMO

A novel osmotic pump tablet with ethyl cellulose (EC) and polyvinyl pyrrolidone (PVP) as the semipermeable membrane and isosorbide-5-mononitrate (5-ISMN) as the model drug was formulated in this study. Zero order release kinetics were attained by avoiding aging during storage. Drug release increased with an increase in the percentage of PVP K30 in the semipermeable membrane. However, drug release decreased with increased coating weight. Drug release rates decreased continuously for tablets coated with EC/PEG4000 and cellulose acetate (CA)/PEG4000. This tendency was more marked with longer storage time. However, there was little change in drug release rates for tablets with a semipermeable membrane of EC/PVP K30 at 6, 12 or 24 months. The weight loss test also validated the results mentioned above. The relative bioavailability of the osmotic-pump tablets against the reference formulation in single and multiple dose regimens was 116.7 and 106.5, respectively. This means that the bioavailability of osmotic pump tablets using PVP as the plasticiser was equal to that of the reference formulation. In general, 5-ISMN osmotic pump tablets with a semipermeable membrane composed of EC/PVP K30 may be useful in providing constant drug delivery with minimum fluctuations during longer storage time.


Assuntos
Diuréticos/administração & dosagem , Dinitrato de Isossorbida/análogos & derivados , Adulto , Área Sob a Curva , Disponibilidade Biológica , Celulose/análogos & derivados , Celulose/química , Química Farmacêutica , Preparações de Ação Retardada , Diuréticos/farmacocinética , Sistemas de Liberação de Medicamentos , Estabilidade de Medicamentos , Armazenamento de Medicamentos , Humanos , Dinitrato de Isossorbida/administração & dosagem , Dinitrato de Isossorbida/farmacocinética , Masculino , Membranas Artificiais , Osmose , Excipientes Farmacêuticos/química , Povidona/química , Soluções , Adulto Jovem
14.
J Huazhong Univ Sci Technolog Med Sci ; 32(2): 299-302, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22528237

RESUMO

Many researchers employed mammalian expression system to artificially express cannabinoid receptors, but immunoblot data that directly prove efficient protein expression can hardly be seen in related research reports. In present study, we demonstrated cannabinoid receptor protein was not able to be properly expressed with routine mammalian expression system. This inefficient expression was rescued by endowing an exogenous signal peptide ahead of cannabinoid receptor peptide. In addition, the artificially synthesized cannabinoid receptor was found to aggregate under routine sample denaturing temperatures (i.e., ≥95°C), forming a large molecular weight band when analyzed by immuno-blotting. Only denaturing temperatures ≤75°C yielded a clear band at the predicted molecular weight. Collectively, we showed that efficient mammalian expression of cannabinoid receptors need a signal peptide sequence, and described the requirement for a low sample denaturing temperature in immuno-blot analysis. These findings provide very useful information for efficient mammalian expression and immuno-blotting of membrane receptors.


Assuntos
Western Blotting/métodos , Perfilação da Expressão Gênica/métodos , Sinais Direcionadores de Proteínas , Receptores de Canabinoides/metabolismo , Animais , Células CHO , Cricetinae , Cricetulus , Células HEK293 , Humanos , Desnaturação Proteica , Reprodutibilidade dos Testes , Sensibilidade e Especificidade , Temperatura
15.
Front Oncol ; 12: 895112, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35707366

RESUMO

The transcription factor p53 is the most well-characterized tumor suppressor involved in multiple cellular processes, which has expanded to the regulation of metabolism in recent decades. Accumulating evidence reinforces the link between the disturbance of p53-relevant metabolic activities and tumor development. However, a full-fledged understanding of the metabolic roles of p53 and the underlying detailed molecular mechanisms in human normal and cancer cells remain elusive, and persistent endeavor is required to foster the entry of drugs targeting p53 into clinical use. This mini-review summarizes the indirect regulation of cellular metabolism by wild-type p53 as well as mutant p53, in which mechanisms are categorized into three major groups: through modulating downstream transcriptional targets, protein-protein interaction with other transcription factors, and affecting signaling pathways. Indirect mechanisms expand the p53 regulatory networks of cellular metabolism, making p53 a master regulator of metabolism and a key metabolic sensor. Moreover, we provide a brief overview of recent achievements and potential developments in the therapeutic strategies targeting mutant p53, emphasizing synthetic lethal methods targeting mutant p53 with metabolism. Then, we delineate synthetic lethality targeting mutant p53 with its indirect regulation on metabolism, which expands the synthetic lethal networks of mutant p53 and broadens the horizon of developing novel therapeutic strategies for p53 mutated cancers, providing more opportunities for cancer patients with mutant p53. Finally, the limitations and current research gaps in studies of metabolic networks controlled by p53 and challenges of research on p53-mediated indirect regulation on metabolism are further discussed.

16.
Front Oncol ; 12: 940402, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35936710

RESUMO

TP53 is mutated in more than 80% of basal-like breast cancers (BLBCs). BLBCs with TP53 mutation are usually high-grade and have worse responses to chemotherapy, leading to poor clinical outcomes. Wild-type p53 (WTp53) is well-accepted to promote fatty acid oxidation (FAO); however, in this study, we demonstrate that mutant p53 (Mutp53) enhances FAO activity through constitutively upregulating CPT1C via dysregulating the miR-200c-ZEB2 axis. Sustained CPT1C expression contributes to the metabolic preference of FAO, epithelial-mesenchymal transition (EMT) phenotypes, migration, invasion, and cancer stemness in BLBC, which is mediated by modulating the redox status. Furthermore, interference of CPT1C expression impairs tumor growth and pulmonary colonization of BLBC cells in vivo, and even postpones the occurrence of spontaneous metastasis, resulting in a prolonged disease-specific survival (DSS). Consistently, clinical validation reveals that high CPT1C is observed in breast cancer patients with metastasis and is correlated with poor overall, disease-free, progression-free, and disease-specific survival in BLBC patients. Together, unlike WTp53 which transiently transactivates CPT1C, Mutp53 provides long-term benefits through sustaining CPT1C expression by disturbing the miR-200c-ZEB2 axis, which potentiates FAO and facilitates tumor progression in BLBC, suggesting that targeting Mutp53-CPT1C-driven metabolic reprogramming is promising to serve as novel therapeutic strategies for BLBC in the future.

17.
Biotechnol J ; 17(5): e2100655, 2022 May.
Artigo em Inglês | MEDLINE | ID: mdl-35072976

RESUMO

N-terminal coding sequences (NCSs) are key regulatory elements for fine-tuning gene expression during translation initiation-the rate-limiting step of translation. However, owing to the complex combinatory effects of NCS biophysical factors and endogenous regulation, designing NCSs remains challenging. In this study, a multi-view learning strategy for model-driven generation of synthetic NCSs for Saccharomyces cerevisiae and Bacillus subtilis are implemented, which are widely used in laboratories and industries. NCS libraries for S. cerevisiae and B. subtilis with nearly 150,000 cells were sorted. Next, model training was performed with NCS deep features extracted from DNA, codon, and amino acid sequences, as well as calculated features from the minimum free energy (MFE) and tRNA adaption index. Two models were separately developed for generating synthetic NCSs for both up- and down-regulating gene expression with accuracies higher than 65% for S. cerevisiae and B. subtilis. Synthetic NCSs were then applied to enhance bioproduction, yielding 1.48- and 1.71-fold production improvements of D-limonene by S. cerevisiae and ovalbumin by B. subtilis, respectively. This work provides model-driven design of synthetic NCSs as a toolbox for regulating gene expression in S. cerevisiae and B. subtilis. The machine learning-based modeling approach can be used for NCS design in other microorganisms.


Assuntos
Saccharomyces cerevisiae , Fermento Seco , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Códon/metabolismo , Expressão Gênica , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
18.
Am J Cancer Res ; 12(12): 5462-5483, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36628281

RESUMO

Numerous reports indicate that enhanced expression of Y-box binding protein-1 (YB-1) in tumor cells is strongly associated with tumorigenesis, aggressiveness, drug resistance, as well as poor prognosis in several types of cancers, and YB-1 is considered to be an oncogene. The molecular mechanism contributing to the regulation of the biological activities of YB-1 remains obscure. Sumoylation, a post-translational modification involving the covalent conjugation of small ubiquitin-like modifier (SUMO) proteins to a target protein, plays key roles in the modulation of protein functions. In this study, our results revealed that YB-1 is sumoylated and that Lys26 is a critical residue for YB-1 sumoylation. Moreover, YB-1 was found to directly interact with SUMO proteins, and disruption of the SUMO-interacting motif (SIM) of YB-1 not only interfered with this interaction but also diminished YB-1 sumoylation. The subcellular localization, protein stability, and transcriptional regulatory activity of YB-1 were not significantly affected by sumoylation. However, decreased sumoylation disrupted the interaction between YB-1 and PCNA as well as YB-1-mediated inhibition of the MutSα/PCNA interaction and MutSα mismatch binding activity, indicating a functional role of YB-1 sumoylation in inducing DNA mismatch repair (MMR) deficiency and spontaneous mutations. The MMR machinery also recognizes alkylator-modified DNA adducts to signal for cell death. We further demonstrated that YB-1 sumoylation is crucial for the inhibition of SN1-type alkylator MNNG-induced cytotoxicity, G2/M-phase arrest, apoptosis, and the MMR-dependent DNA damage response. Collectively, these results provide molecular explanations for the impact of YB-1 sumoylation on MMR deficiency and alkylator tolerance, which may provide insight for designing therapeutic strategies for malignancies and alkylator-resistant cancers associated with YB-1 overexpression.

19.
Anticancer Drugs ; 22(3): 262-72, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21360849

RESUMO

The introduction of luteinizing hormone-releasing hormone (LHRH) analogs and their antagonists is revolutionizing the treatment of prostate cancer. In this study, poly(D,L-lactideco-glycolide) (PLGA) microspheres containing a highly potent LHRH antagonist (LXT-101) of interest in the indication of prostate cancer were evaluated on release mechanisms in vitro and biological performance in vivo. LXT-101 microspheres were prepared by the water/oil/water double emulsion method and the solid/oil/oil method. The results showed that the mechanism of LXT-101 releasing from PLGA 14,000 microspheres was the cooperation of drug diffusion and polymer degradation. This clarified the relationship between the microsphere characterization and hormone level in vivo. The larger microspheres (33 µm) could inhibit the testosterone level to castration for a longer time (35 days) than the smaller microspheres (15 µm, 14 days). The formulation containing the hydrophilic additive (polyethylene glycol 6000) could suppress the testosterone level to castration for a longer time (> 35 days) than the formulation without polyethylene glycol (14 days). The appearance of testis, vesicular seminalis, and prostates changed after treatment. The weights of sexual organs decreased significantly. The in-vivo release of the LXT-101 PLGA 14,000 microspheres curve showed that in-vivo release started immediately after day 1 (22.7%) and was rapid during the first 5 days (40.2% release). The LXT-101 microspheres could be a promising drug delivery system candidate to treat sex hormone-dependent tumors and other related disorders.


Assuntos
Antineoplásicos/administração & dosagem , Sistemas de Liberação de Medicamentos , Hormônio Liberador de Gonadotropina/antagonistas & inibidores , Ácido Láctico , Microesferas , Oligopeptídeos/administração & dosagem , Polietilenoglicóis/química , Ácido Poliglicólico , Neoplasias da Próstata/tratamento farmacológico , Receptores LHRH/antagonistas & inibidores , Animais , Antineoplásicos/farmacocinética , Dioxanos , Humanos , Ácido Láctico/química , Masculino , Oligopeptídeos/farmacocinética , Orquiectomia , Tamanho da Partícula , Ácido Poliglicólico/química , Copolímero de Ácido Poliláctico e Ácido Poliglicólico , Polímeros , Próstata/metabolismo , Neoplasias da Próstata/metabolismo , Ratos , Ratos Sprague-Dawley , Testículo/efeitos dos fármacos , Testosterona/metabolismo
20.
Pharmazie ; 66(11): 826-30, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-22204126

RESUMO

A liquid chromatography-tandem mass spectrometry (LC-MS-MS) method was succesfully developed for the simultaneous determination of SHR116958 (a new gastroprokinetic agent) and its metabolite in rat plasma under the condition that tamsulosin was used as the internal standard. The analytes and internal standard were extracted by liquid-liquid extraction (LLE). After electrospray ionization, positive ion fragments were detected in the multiple reaction monitoring (MRM) mode with a triple quadrupole tandem mass spectrometer. The method was linear in the concentration range of 2.71-5560 ng x mL(-1) with an average correlation > 0.99 for both SHR116958 and its metabolite. Moreover, the method was validated according to FDA guidance in terms of accuracy and precision, in the meanwhile stability of compounds was well established in a battery of studies, i.e., bench-top, autosampler and long-term storage stability as well as freeze/thaw cycles. Therefore, the method proved to be suitable for pharmacokinetics study of SHR116958 and its metabolite in rat.


Assuntos
Benzamidas/farmacocinética , Fármacos Gastrointestinais/farmacocinética , Morfolinas/farmacocinética , Animais , Calibragem , Cromatografia Líquida de Alta Pressão , Indicadores e Reagentes , Injeções Intravenosas , Marcação por Isótopo , Controle de Qualidade , Ratos , Padrões de Referência , Reprodutibilidade dos Testes , Soluções , Espectrometria de Massas por Ionização por Electrospray
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