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1.
J Toxicol Pathol ; 37(2): 93-97, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38584970

RESUMO

This study aimed to establish an exposure method that can induce homogeneous lesions with minimal inter-individual variability. The distribution of lesions induced by bleomycin (BLM) administration was also analyzed. C57BL mice were intrabronchially administered 20 µL of BLM (3 mg/mL) using a bronchoscope in the left or right bronchus. The mice were sacrificed 14 days after administration, and their lungs were evaluated histopathologically. BLM-induced inflammatory lesions were widely observed in the lungs. In the left bronchus-treated group, lesions were uniformly observed throughout the lobe, and no individual differences were noted. Meanwhile, in the right bronchus-treated group, individual differences in the distribution of the pulmonary lesions were observed. The distribution of lesions differed among the four lobes of the right lung owing to their anatomical features. Administration into the left bronchus is recommended for highly homogeneous lung exposure and for establishing models that contribute to highly accurate toxicity and efficacy evaluations.

2.
Biochem Biophys Res Commun ; 602: 49-56, 2022 04 30.
Artigo em Inglês | MEDLINE | ID: mdl-35248949

RESUMO

The deletion of the Hhex (Hematopoietically expressed homeobox) gene causes agenesis of the liver and polycystic liver disease depending on its timing. The present study was undertaken to determine the role of the Hhex gene in not only signaling cascades to cyst and abnormal bile duct formation but also the liver progenitor contribution to cystic development. Liver-specific Hhex knockout mice (Alb-Cre/HhexloxP/loxP) in adult stages were used. Wild-type and conditional knockout (cKO) livers were immunohistologically compared for cell growth, and gene expression of liver functions, biliary markers and cystic markers. In Hhex cKO livers, cyst formation and dilated intrahepatic bile ducts were noted, which resembled the histology of the von Meyenburg complex. Ki67 immunohistochemistry showed that the growth activity in bile ducts and cysts of cKO livers was elevated compared with that of wild-type livers. There were far fewer liver progenitor cells or bile ductule cells around portal veins of cKO livers than in wild-type livers. Several liver-enriched transcription factors, including Foxa1 and Foxa2, were heterogeneously expressed in bile ducts and cysts of cKO livers whereas their expression in wild-type bile ducts was comparatively homogeneous. PC1 and PC2 immunohistochemistry revealed their up-regulation in cysts of cKO livers. These data indicate that Hhex is not only required for proper bile duct morphogenesis, but is also involved in cyst formation through promoted cell growth. Liver progenitor cells may form cysts. Unbalanced expression of liver-enriched transcription factors might be involved in cyst formation. Hhex cKO mice may be a good animal model for hepatic cystic diseases.


Assuntos
Cistos , Hepatopatias , Animais , Cistos/metabolismo , Expressão Gênica , Proteínas de Homeodomínio/genética , Proteínas de Homeodomínio/metabolismo , Fígado/metabolismo , Hepatopatias/metabolismo , Camundongos , Camundongos Knockout , Células-Tronco/patologia , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo
3.
Xenobiotica ; 51(9): 983-994, 2021 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-34227923

RESUMO

Chimeric mice are immunodeficient mice in which the majority of the hepatic parenchymal cells are replaced with human hepatocytes.Following intravenous administration of 24 model compounds to control and chimeric mice, human hepatic clearance (CLh) was predicted using the single-species allometric scaling (SSS) method. Predictability of the chimeric mice was better than that of the control mice.Human CLh was predicted by the physiologically based scaling (PBS) method, wherein observed CLh in chimeric mice was first converted to intrinsic CLh (CLh,int). As the liver of chimeric mice contains remaining mouse hepatocytes, CLh,int was corrected by in vitro CLh ratios of the mouse to human hepatocytes according to their hepatocyte replacement index. Further, predicted human CLh was calculated based on an assumption that CLh,int in chimeric mice normalised for their liver weight was equal to CLh,int per liver weight in humans. Consequently, better prediction performance was observed with the use of the PBS method than the SSS method.SSS method is an empirical method, and the effects of coexisting mouse metabolism cannot be avoided. However, the PBS method with in vitro CLh correction might be a potential solution and may expand the application of chimeric mice in new drug development.


Assuntos
Preparações Farmacêuticas , Animais , Quimera , Hepatócitos , Humanos , Fígado/metabolismo , Taxa de Depuração Metabólica , Camundongos , Preparações Farmacêuticas/metabolismo
4.
J Biol Chem ; 286(7): 5464-70, 2011 Feb 18.
Artigo em Inglês | MEDLINE | ID: mdl-21149300

RESUMO

PCSK9 (proprotein convertase subtilisin-like/kexin type 9) is an emerging target for pharmaceutical intervention. This multidomain protein interacts with the LDL receptor (LDLR), promoting receptor degradation. Insofar as PCSK9 inhibition induces a decrease in plasma cholesterol levels, understanding the nature of the binding interaction between PCSK9 and the LDLR is of critical importance. In this study, the ability of PCSK9 to compete with apoE3 N-terminal domain-containing reconstituted HDL for receptor binding was examined. Whereas full-length PCSK9 was an effective competitor, the N-terminal domain (composed of the prodomain and catalytic domain) was not. Surprisingly, the C-terminal domain (CT domain) of PCSK9 was able to compete. Using a direct binding interaction assay, we show that the PCSK9 CT domain bound to the LDLR in a calcium-dependent manner and that co-incubation with the prodomain and catalytic domain had no effect on this binding. To further characterize this interaction, two LDLR fragments, the classical ligand-binding domain (LBD) and the EGF precursor homology domain, were expressed in stably transfected HEK 293 cells and isolated. Binding assays showed that the PCSK9 CT domain bound to the LBD at pH 5.4. Thus, CT domain interaction with the LBD of the LDLR at endosomal pH constitutes a second step in the PCSK9-mediated LDLR binding that leads to receptor degradation.


Assuntos
Cálcio/química , Modelos Químicos , Receptores de LDL/química , Serina Endopeptidases/química , Cálcio/metabolismo , Endossomos/química , Endossomos/genética , Endossomos/metabolismo , Células HEK293 , Humanos , Concentração de Íons de Hidrogênio , Pró-Proteína Convertase 9 , Pró-Proteína Convertases , Ligação Proteica , Estrutura Terciária de Proteína , Receptores de LDL/genética , Receptores de LDL/metabolismo , Serina Endopeptidases/genética , Serina Endopeptidases/metabolismo
5.
Arch Biochem Biophys ; 525(1): 32-9, 2012 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-22683650

RESUMO

Small compounds that activate the insulin-dependent signaling pathway have potential therapeutic applications in controlling type 2 diabetes mellitus. The rat enhancer of split- and hairy-related protein-2 (SHARP-2) is an insulin-inducible transcription factor that decreases expression of the phosphoenolpyruvate carboxykinase gene, a gluconeogenic enzyme gene. In this study, we screened for soybean isoflavones that can induce the rat SHARP-2 gene expression and analyzed their mechanism(s). Genistein and (S)-Equol, a metabolite of daidzein, induced rat SHARP-2 gene expression in H4IIE rat hepatoma cells. The (S)-Equol induction was mediated by both the phosphoinositide 3-kinase- and protein kinase C (PKC)-pathways. When a dominant negative form of atypical PKC lambda (aPKCλ) was expressed, the induction of SHARP-2 mRNA level by (S)-Equol was inhibited. In addition, Western blot analyses showed that (S)-Equol rapidly activated both aPKCλ and classical PKC alpha. Furthermore, the (S)-Equol induction was inhibited by treatment with a RNA polymerase inhibitor or a protein synthesis inhibitor. Finally, a reporter gene assay revealed that the transcriptional stimulation by (S)-Equol was mediated by nucleotide sequences located between -4687 and -4133 of the rat SHARP-2 gene. Thus, we conclude that (S)-Equol is an useful dietary supplement to control type 2 diabetes mellitus.


Assuntos
Fatores de Transcrição Hélice-Alça-Hélice Básicos/genética , Equol/farmacologia , Proteínas de Homeodomínio/genética , Insulina/metabolismo , Animais , Linhagem Celular Tumoral , Equol/metabolismo , Regulação da Expressão Gênica/efeitos dos fármacos , Isoenzimas/metabolismo , Isoflavonas/metabolismo , Proteína Quinase C/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Ratos , Transdução de Sinais/efeitos dos fármacos , Glycine max/química , Transcrição Gênica/efeitos dos fármacos
6.
Immunol Lett ; 229: 55-61, 2021 01.
Artigo em Inglês | MEDLINE | ID: mdl-33253759

RESUMO

Humanized mice are widely used to study the human immune system in vivo and develop therapies for various human diseases. Human peripheral blood mononuclear cells (PBMC)-engrafted NOD/Shi-scid IL2rγnull (NOG) mice are useful models for characterization of human T cells. However, the development of graft-versus-host disease (GVHD) limits the use of NOG PBMC models. We previously established a NOG-major histocompatibility complex class I/II double knockout (dKO) mouse model. Although humanized dKO mice do not develop severe GVHD, they have impaired reproductive performance and reduced chimerism of human cells. In this study, we established a novel beta-2 microglobulin (B2m) KO mouse model using CRISPR/Cas9. By crossing B2m KO mice with I-Ab KO mice, we established a modified dKO (dKO-em) mouse model. Reproductivity was slightly improved in dKO-em mice, compared with conventional dKO (dKO-tm) mice. dKO-em mice showed no signs of GVHD after the transfer of human PBMCs; they also exhibited high engraftment efficiency. Engrafted human PBMCs survived significantly longer in the peripheral blood and spleens of dKO-em mice, compared with dKO-tm mice. In conclusion, dKO-em mice might constitute a promising PBMC-based humanized mouse model for the development and preclinical testing of novel therapeutics for human diseases.


Assuntos
Sistemas CRISPR-Cas , Transplante de Células , Técnicas de Inativação de Genes , Antígenos de Histocompatibilidade/genética , Subunidade gama Comum de Receptores de Interleucina/deficiência , Leucócitos Mononucleares/imunologia , Leucócitos Mononucleares/metabolismo , Animais , Biomarcadores , Transplante de Células/efeitos adversos , Transplante de Células/métodos , Edição de Genes , Marcação de Genes , Loci Gênicos , Sobrevivência de Enxerto , Doença Enxerto-Hospedeiro/diagnóstico , Doença Enxerto-Hospedeiro/etiologia , Humanos , Imuno-Histoquímica , Imunofenotipagem , Camundongos , Camundongos Endogâmicos NOD , Camundongos Knockout , Modelos Animais , Índice de Gravidade de Doença , Baço/imunologia , Baço/metabolismo
7.
Biodegradation ; 21(1): 11-20, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19578828

RESUMO

In this study, combination of a partial nitritation reactor, using immobilized polyethylene glycol (PEG) gel carriers, and a continuous stirred granular anammox reactor was investigated for nitrogen removal from livestock manure digester liquor. Successful nitrite accumulation in the partial nitritation reactor was observed as the nitrite production rate reached 2.1 kg-N/m(3)/day under aerobic nitrogen loading rate of 3.8 kg-N/m(3)/day. Simultaneously, relatively high free ammonia concentrations (average 50 mg-NH(3)/l) depressed the activity of nitrite oxidizing bacteria with nitrate concentration never exceeding 3% of TN concentration in the effluent of the partial nitritation reactor (maximum 35.2 mg/l). High nitrogen removal rates were achieved in the granular anammox reactor with the highest removal rate being 3.12 kg-N/m(3)/day under anaerobic nitrogen loading rate of 4.1 kg-N/m(3)/day. Recalcitrant organic compounds in the digester liquor did not impair anammox reaction and the SS accumulation in the granular anammox reactor was minimal. The results of this study demonstrated that partial nitritation-anammox combination has the potential to successfully remove nitrogen from livestock manure digester liquor.


Assuntos
Amônia/metabolismo , Bactérias/metabolismo , Esterco/microbiologia , Nitritos/metabolismo , Nitrogênio/metabolismo , Eliminação de Resíduos Líquidos/métodos , Anaerobiose , Animais , Animais Domésticos/metabolismo , Biodegradação Ambiental , Reatores Biológicos/microbiologia , Esterco/análise , Nitratos/metabolismo
8.
Acta Neuropathol Commun ; 8(1): 67, 2020 05 12.
Artigo em Inglês | MEDLINE | ID: mdl-32398151

RESUMO

Aquaporin-4 (AQP4) has been suggested to be involved in the pathogenesis of neurodegenerative diseases including Alzheimer's disease (AD), which may be due to the modulation of neuroinflammation or the impairment of interstitial fluid bulk flow system in the central nervous system. Here, we show an age-dependent impairment of several behavioral outcomes in 5xFAD AQP4 null mice. Twenty-four-hour video recordings and computational analyses of their movement revealed that the nighttime motion of AQP4-deficient 5xFAD mice was progressively reduced between 20 and 36 weeks of age, with a sharp deterioration occurring between 30 and 32 weeks. This reduction in nighttime motion was accompanied by motor dysfunction and epileptiform neuronal activities, demonstrated by increased abnormal spikes by electroencephalography. In addition, all AQP4-deficient 5xFAD mice exhibited convulsions at least once during the period of the analysis. Interestingly, despite such obvious phenotypes, parenchymal amyloid ß (Aß) deposition, reactive astrocytosis, and activated microgliosis surrounding amyloid plaques were unchanged in the AQP4-deficient 5xFAD mice relative to 5xFAD mice. Taken together, our data indicate that AQP4 deficiency greatly accelerates an age-dependent deterioration of neuronal function in 5xFAD mice associated with epileptiform neuronal activity without significantly altering Aß deposition or neuroinflammation in this mouse model. We therefore propose that there exists another pathophysiological phase in AD which follows amyloid plaque deposition and neuroinflammation and is sensitive to AQP4 deficiency.


Assuntos
Doença de Alzheimer/metabolismo , Aquaporina 4/metabolismo , Neuroproteção/fisiologia , Doença de Alzheimer/patologia , Doença de Alzheimer/fisiopatologia , Animais , Comportamento Animal , Encéfalo/metabolismo , Encéfalo/patologia , Encéfalo/fisiopatologia , Modelos Animais de Doenças , Feminino , Humanos , Camundongos , Camundongos Knockout , Camundongos Transgênicos , Placa Amiloide/patologia , Convulsões/metabolismo , Convulsões/fisiopatologia
9.
J Lipid Res ; 50(8): 1548-55, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-19098282

RESUMO

Apolipoprotein E (apoE) is an exchangeable apolipoprotein that functions as a ligand for members of the LDL receptor family, promoting lipoprotein clearance from the circulation. Productive receptor binding requires that apoE adopt an LDL receptor-active conformation through lipid association, and studies have shown that the 22 kDa N-terminal (NT) domain (residues 1-183) of apoE is both necessary and sufficient for receptor interaction. Using intein-mediated expressed protein ligation (EPL), a semisynthetic apoE3 NT has been generated for use in structure-function studies designed to probe the nature of the lipid-associated conformation of the protein. Circular dichroism spectroscopy of EPL-generated apoE3 NT revealed a secondary structure content similar to wild-type apoE3 NT. Likewise, lipid and LDL receptor binding studies revealed that EPL-generated apoE3 NT is functional. Subsequently, EPL was used to construct an apoE3 NT enriched with 15N solely and specifically in residues 112-183. 1H-15N heteronuclear single quantum correlation spectroscopy experiments revealed that the ligation product is correctly folded in solution, adopting a conformation similar to wild-type apoE3-NT. The results indicate that segmental isotope labeling can be used to define the lipid bound conformation of the receptor binding element of apoE as well as molecular details of its interaction with the LDL receptor.


Assuntos
Apolipoproteína E3/química , Sequência de Aminoácidos , Apolipoproteína E3/genética , Apolipoproteína E3/metabolismo , Sítios de Ligação , Escherichia coli , Humanos , Inteínas , Marcação por Isótopo/métodos , Ligantes , Isótopos de Nitrogênio , Ressonância Magnética Nuclear Biomolecular , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Receptores de LDL/metabolismo , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/metabolismo
10.
Biochemistry ; 47(44): 11647-52, 2008 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-18847225

RESUMO

The release of ligand from the low-density lipoprotein receptor (LDLR) has been postulated to involve a "histidine switch"-induced intramolecular rearrangement that discharges bound ligand. A recombinant soluble low-density lipoprotein receptor (sLDLR) was employed in ligand binding experiments with a fluorescently tagged variant apolipoprotein E N-terminal domain (apoE-NT). Binding was monitored as a function of fluorescence resonance energy transfer (FRET) from excited Trp residues in sLDLR to an extrinsic fluorophore covalently attached to Trp-null apoE3-NT. In binding experiments with wild-type (WT) sLDLR, FRET-dependent AEDANS fluorescence decreased as the pH was lowered. To investigate the role of His190, His562, and His586 in sLDLR in pH-dependent ligand binding and discharge, site-directed mutagenesis studies were performed. Compared to WT sLDLR, triple His --> Ala mutant sLDLR displayed attenuated pH-dependent ligand binding and a decreased level of ligand release as a function of low pH. When these His residues were substituted for Lys, the positively charged side chain of which does not ionize over this pH range, ligand binding was nearly abolished at all pH values. When sequential His to Lys mutants were examined, the evidence suggested that His562 and His586 function cooperatively. Whereas the sedimentation coefficient for WT sLDLR increased when the pH was reduced from 7 to 5, no such change occurred in the case of the triple Lys mutant receptor or a His562Lys/His586Lys double mutant receptor. The data support the existence of a cryptic, histidine side chain ionization-dependent alternative ligand that modulates ligand discharge via conformational reorganization.


Assuntos
Receptores de LDL/química , Receptores de LDL/metabolismo , Substituição de Aminoácidos , Apolipoproteínas E/química , Apolipoproteínas E/genética , Apolipoproteínas E/metabolismo , Transferência Ressonante de Energia de Fluorescência , Histidina/química , Humanos , Concentração de Íons de Hidrogênio , Técnicas In Vitro , Cinética , Ligantes , Modelos Moleculares , Mutagênese Sítio-Dirigida , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Ligação Proteica , Conformação Proteica , Receptores de LDL/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Solubilidade , Triptofano/química
11.
Bioresour Technol ; 99(14): 6419-25, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18166452

RESUMO

Partial nitritation using inhibition of free ammonia and free nitric acid is an effective technique for the treatment of high concentrations of ammonium in wastewaters. This technique was applied to the digester liquor of swine wastewater and the stability of its long-term operation was investigated. Partial nitritation was successfully maintained at a nitrogen loading rate (NLR) of 1.0 kg N m(-3)d(-1) for 120 days without acclimatization of nitrite oxidizing bacteria (NOB) to the inhibitory compounds (free ammonia and free nitric acid). The conversion efficiencies of NH(4)-N to NO(2)-N and to NO(3)-N were determined to be around 58% and <5%, respectively. After the establishment of partial nitritation, the influence of swine wastewater on the Anammox reaction was examined using continuous flow treatment experiments. Consistent nitrogen removal was achieved for 70 days at a nitrogen removal rate (NRR) of 0.22 kg N m(-3)d(-1) and the color of Anammox bacteria changed from red to greyish black. The NO(2)-N consumption and the NO(3)-N production increased concurrently and the Anammox reaction ratio was estimated to be 1:1.67:0.53, which is different from that reported previously (1:1.32:0.26).


Assuntos
Recuperação e Remediação Ambiental/métodos , Resíduos Industriais , Nitratos/química , Animais , Suínos
12.
Biochim Biophys Acta ; 1761(9): 1100-6, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16945585

RESUMO

The N terminal domain of human apolipoprotein E3 (apoE3-NT) functions as a ligand for members of the low-density lipoprotein receptor (LDLR) family. Whereas lipid-free apoE3-NT adopts a stable four-helix bundle conformation, a lipid binding induced conformational change is required for LDLR recognition. To investigate the role of a leucine zipper motif identified in the helix bundle on lipid binding activity, three leucine residues in helix 2 (Leu63, Leu71 and Leu78) were replaced by alanine. Recombinant "leucine to alanine" (LA) apoE3-NT was produced in E. coli, isolated and characterized. Stability studies revealed a transition midpoint of guanidine hydrochloride induced denaturation of 2.7 M and 2.1 M for wild type (WT) and LA apoE3-NT, respectively. Results from fluorescent dye binding assays revealed that, compared to WT apoE3-NT, LA apoE3-NT has an increased content of solvent exposed hydrophobic surfaces. In phospholipid vesicle solubilization assays, LA apoE3-NT was more effective than WT apoE3-NT at inducing a time-dependent decrease in dimyristoylphosphatidylglycerol vesicle light scattering intensity. Likewise, in lipoprotein binding assays, LA apoE3-NT protected human low-density lipoprotein from phospholipase C induced aggregation to a greater extent than WT apoE3-NT. On the other hand, LA apoE3-NT and WT apoE3-NT were equivalent in terms of their ability to bind a soluble LDLR fragment. The results suggest that the leucine zipper motif confers stability to the apoE3-NT helix bundle state and may serve to modulate lipid binding activity of this domain and, thereby, influence the conformational transition associated with manifestation of LDLR binding activity.


Assuntos
Apolipoproteína E3/química , Zíper de Leucina , Alanina/genética , Substituição de Aminoácidos , Humanos , Interações Hidrofóbicas e Hidrofílicas , Leucina/genética , Lipoproteínas LDL/química , Lipossomos , Modelos Moleculares , Fosfatidilgliceróis , Ligação Proteica , Desnaturação Proteica , Estrutura Terciária de Proteína , Receptores de LDL/química , Proteínas Recombinantes/química , Fosfolipases Tipo C/química
13.
DNA Repair (Amst) ; 5(1): 80-8, 2006 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-16140596

RESUMO

A novel RecA-like protein, differing from Dmc1 and Rad51, was characterized in Oryza sativa L. cv. Nipponbare. Because the protein is homologous to bacterial RadA, the gene was designated OsRadA. The open reading frame was predicted to encode a 66kDa protein of 619 amino acid residues and was found in plants but not animals or yeast. OsRadA showed D-loop and single-stranded DNA-dependent ATPase activities. Gene expression was found to be high in meristematic tissues, and was localized in the nucleus. An RNAi mutant of Arabidopsis thaliana RadA (AtRadA) was sensitive to mutagenic agents such as UV and MMC, suggesting that RadA functions in DNA repair.


Assuntos
Reparo do DNA/fisiologia , Oryza/genética , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Arabidopsis/efeitos dos fármacos , Arabidopsis/efeitos da radiação , Proteínas de Arabidopsis/efeitos dos fármacos , Proteínas de Arabidopsis/genética , Proteínas de Arabidopsis/metabolismo , Proteínas de Arabidopsis/efeitos da radiação , Proteínas Arqueais/química , Proteínas Arqueais/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Proliferação de Células , Clonagem Molecular , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/metabolismo , Regulação da Expressão Gênica de Plantas , Mitomicina/efeitos adversos , Dados de Sequência Molecular , Mutação , Oryza/citologia , Recombinases Rec A/química , Recombinases Rec A/metabolismo , Homologia de Sequência de Aminoácidos , Frações Subcelulares , Raios Ultravioleta/efeitos adversos
14.
Nucleic Acids Res ; 30(7): 1585-92, 2002 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-11917019

RESUMO

A novel DNA polymerase, designated as OsPolI-like, has been identified from the higher plant, rice (Oryza sativa L. cv. Nipponbare). The OsPolI-like cDNA was 3765 bp in length, and the open reading frame encoded a predicted product of 977 amino acid residues with a molecular weight of 100 kDa. The OsPolI-like gene has been mapped to chromosome 8 and contains 12 exons and 11 introns. The encoded protein showed a high degree of sequence and structural homology to Escherichia coli pol I protein, but differed from DNA polymerase gamma and theta. The DNA polymerase domain of OsPolI-like showed DNA polymerase activity. Subcellular fractionation analysis suggested that the protein is localized in the plastid. Northern and western blotting, and in situ hybridization analyses demonstrated preferential expression of OsPolI-like in meristematic tissues such as shoot apical meristem, root apical meristem, leaf primordia and the marginal meristem. Interestingly, no expression was detected in mature leaves, although they have a high chloroplast content. These properties indicated that OsPolI-like is a novel plant DNA polymerase. The function of OsPolI-like is discussed in relation to plastid maturation.


Assuntos
DNA Polimerase Dirigida por DNA/genética , Oryza/genética , Mapeamento Cromossômico , Clonagem Molecular , DNA Polimerase I/genética , DNA Complementar/química , DNA Complementar/genética , DNA Polimerase Dirigida por DNA/química , DNA Polimerase Dirigida por DNA/metabolismo , Escherichia coli/enzimologia , Éxons/genética , Regulação da Expressão Gênica no Desenvolvimento , Regulação Enzimológica da Expressão Gênica , Regulação da Expressão Gênica de Plantas , Hibridização In Situ , Dados de Sequência Molecular , Oryza/enzimologia , Oryza/crescimento & desenvolvimento , Filogenia , Folhas de Planta/enzimologia , Folhas de Planta/genética , Folhas de Planta/crescimento & desenvolvimento , Raízes de Plantas/enzimologia , Raízes de Plantas/genética , Raízes de Plantas/crescimento & desenvolvimento , Caules de Planta/enzimologia , Caules de Planta/genética , Caules de Planta/crescimento & desenvolvimento , Análise de Sequência de DNA
15.
J Biosci Bioeng ; 102(6): 497-503, 2006 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-17270713

RESUMO

A swim-bed reactor using the biofringe acryl-fiber biomass carrier was used for partial nitritation treatment for anaerobic digestion liquor of swine wastewater. The sludge in the reactor demonstrated excellent settling properties, and the sludge volumetric index (SVI) was always about 50 ml g(-1). The mixed liquor suspended solids (MLSS) concentration was maintained above 10,000 mg l(-1) with a maximum of 16,800 mg l(-1). Satisfactory and stable partial nitritation was obtained at a nitrogen loading rate (NLR) of 1.9 kg-N m(-3) d(-1) without any operational control. Only a little nitrate was produced almost during the whole operational period and the nitrite to total oxidized nitrogen ratio (NO(2)-N/(NO(2)-N+NO(3)-N)) was always above 95%. In addition, the influence of temperature on partial nitritation efficiencies was also investigated and non-controlled efficiencies were maintained stably between 15 degrees C and 30 degrees C at an NLR of 1.9 kg-N m(-3) d(-1), but suddenly deteriorated when the temperature fell below 15 degrees C. Nitrite oxidizing bacteria were inhibited by free ammonia and free nitric acid, which prevented the conversion of nitrite to nitrate and the inhibition due to free nitric acid weaken with a decrease in temperature. It was apparent that these phenomena were crucial to the control of partial nitritation treatment.


Assuntos
Amônia/metabolismo , Bactérias Anaeróbias/metabolismo , Biotecnologia/métodos , Nitritos/metabolismo , Esgotos/microbiologia , Poluentes Químicos da Água/farmacocinética , Purificação da Água/métodos , Agricultura/métodos , Animais , Biodegradação Ambiental , Reatores Biológicos/microbiologia , Biotecnologia/instrumentação , Resíduos Industriais/prevenção & controle , Suínos , Poluentes Químicos da Água/isolamento & purificação
16.
Gene ; 353(1): 23-30, 2005 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-15939553

RESUMO

The origin recognition complex (ORC) protein plays a critical role in DNA replication through binding to sites (origins) where replication commences. The protein is composed of six subunits (ORC1 to 6) in animals and yeasts. Our knowledge of the ORC protein in plants is, however, much less complete. We have performed cDNA cloning and characterization of ORC subunits in rice (Oryza sativa L. cv. Nipponbare) in order to facilitate study of plant DNA replication mechanisms. Our previous report provided a description of a gene, ORC1 (OsORC1), that encodes one of the protein subunits. The present report extends this initial analysis to include the genes that encode four other rice ORC subunits, OsORC2, 3, 4 and 5. Northern hybridization analyses demonstrated the presence of abundant transcripts for all OsORC subunits in shoot apical meristems (SAM) and cultured cells, but not in mature leaves. Interestingly, only OsORC5 showed high levels of expression in organs in which cell proliferation is not active, such as flag leaves, the ears and the non-tip roots. The pattern of expression of OsORC2 also differed from other OsORC subunits. When cell proliferation was temporarily halted for 6-10 days by removal of sucrose from the growth medium, expression of OsORC1, OsORC3, OsORC4 and OsORC5 was substantially reduced. However, the level of expression of OsORC2 remained constant. We suggest from these results that expression of OsORC1, 3, 4 and 5 are correlated with cell proliferation, but the expression of OsORC2 is not.


Assuntos
Proteínas de Ligação a DNA/genética , Oryza/genética , Proteínas de Plantas/genética , Biolística , Northern Blotting , Núcleo Celular/metabolismo , Proliferação de Células , Células Cultivadas , Mapeamento Cromossômico , Cromossomos de Plantas/genética , Clonagem Molecular , DNA Complementar/química , DNA Complementar/genética , Éxons , Perfilação da Expressão Gênica , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Genes de Plantas/genética , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Íntrons , Microscopia Confocal , Dados de Sequência Molecular , Complexo de Reconhecimento de Origem , Filogenia , Subunidades Proteicas/genética , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Análise de Sequência de DNA , Sacarose/farmacologia
17.
FEBS J ; 272(13): 3270-81, 2005 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-15978034

RESUMO

Replication protein A (RPA), a heterotrimeric protein composed of 70, 32 and 14-kDa subunits, has been shown to be essential for DNA replication, repair, recombination, and transcription. Previously, we found that, in two seed plants, rice and Arabidopsis, there are two different types of RPA70-kDa subunit. Substantial biochemical and genetic characterization of these two subunits, termed OsRPA70a and OsRPA70b or AtRPA70a and AtRPA70b, respectively, is described in this report. Inactivation of AtRPA70a by transfer DNA insertion or RNA interference is lethal, so the complex containing RPA70a may be essential for DNA replication. Transfer DNA insertion and RNAi lines for AtRPA70b are morphologically normal, albeit hypersensitive to certain mutagens, such as UV-B and methyl methanesulfonate, suggesting that RPA70b functions mostly in DNA repair. In two-hybrid, pull-down and coexpression analysis, OsRPA70b was found to interact more selectively than OsRPA70a with OsRPA32. The data suggest that two different types of RPA heterotrimer are present in seed plants, and that there may be additional 32 and 14-kDa subunit homologs that interact with OsRPA70a. Each of the two probable plant RPA complexes may have different roles in DNA metabolism.


Assuntos
Arabidopsis/genética , Replicação do DNA , DNA de Plantas , DNA de Cadeia Simples/metabolismo , Proteínas de Ligação a DNA/genética , Oryza/genética , Arabidopsis/citologia , Arabidopsis/metabolismo , Clonagem Molecular , DNA Bacteriano/genética , DNA Bacteriano/metabolismo , DNA Complementar/química , DNA Complementar/genética , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/metabolismo , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Mutação , Oryza/citologia , Oryza/efeitos dos fármacos , Subunidades Proteicas , RNA Interferente Pequeno/farmacologia , Proteína de Replicação A
18.
Gene ; 308: 79-87, 2003 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-12711392

RESUMO

Ultraviolet-damaged DNA binding protein (UV-DDB) is an important factor involved in DNA repair. To study the role of UV-DDB, we attempted to obtain the cDNA and the protein of a plant UV-DDB. We succeeded in isolating both genes for UV-DDB subunits from rice (Oryza sativa cv. Nipponbare), designated as OsUV-DDB1 and OsUV-DDB2. OsUV-DDB2 (65 kDa) was much larger than human UV-DDB2, but immunoprecipitation and gel mobility shift assay suggested that OsUV-DDB2 is a plant counterpart of UV-DDB2. The transcripts were expressed in proliferating tissues such as the meristem, but were detected at only low levels in the mature leaves, although the leaves are strongly exposed to UV. These transcripts were induced in the meristem after UV-irradiation. The expression levels of OsUV-DDB were significantly reduced when cell proliferation was temporarily halted. These results indicated that the level of OsUV-DDB expression is correlated with cell proliferation, and its expression may be required mostly for DNA repair in DNA replication.


Assuntos
Proteínas de Ligação a DNA/genética , Meristema/genética , Oryza/genética , Brotos de Planta/genética , Sequência de Aminoácidos , Northern Blotting , Western Blotting , Clonagem Molecular , DNA Complementar/química , DNA Complementar/genética , Proteínas de Ligação a DNA/metabolismo , Regulação da Expressão Gênica de Plantas/efeitos da radiação , Meristema/efeitos da radiação , Dados de Sequência Molecular , Oryza/metabolismo , Oryza/efeitos da radiação , Folhas de Planta/genética , Folhas de Planta/metabolismo , Folhas de Planta/efeitos da radiação , Raízes de Plantas/genética , Raízes de Plantas/metabolismo , Raízes de Plantas/efeitos da radiação , Brotos de Planta/efeitos da radiação , Ligação Proteica , Isoformas de Proteínas/genética , Isoformas de Proteínas/metabolismo , RNA de Plantas/genética , RNA de Plantas/metabolismo , RNA de Plantas/efeitos da radiação , Alinhamento de Sequência , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Fatores de Tempo , Raios Ultravioleta
19.
J Biochem ; 135(2): 217-23, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15047723

RESUMO

The homeodomain-containing protein Hex acts as an activator as well as a repressor of transcription in animals. While its repression domain has been mapped to the amino-terminal region, the activation domain has never been identified. Here, we show that the homeodomain and the acidic carboxyl-terminal region are necessary for full activation of the sodium-dependent bile acid cotransporter gene promoter in a cell type-independent manner, suggesting that the carboxyl-terminal region comprising residues 197 to 271 functions as the activation domain. In addition, we observed that a Hex mutant without this activation domain acts as a dominant-negative mutant as to the transactivating function of Hex.


Assuntos
Proteínas de Homeodomínio/genética , Ativação Transcricional , Animais , Sequência de Bases , Ácidos e Sais Biliares/metabolismo , Proteínas de Homeodomínio/metabolismo , Humanos , Luciferases/metabolismo , Dados de Sequência Molecular , Mutação , Regiões Promotoras Genéticas/fisiologia , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Sódio/farmacologia , Fatores de Transcrição/fisiologia , Células Tumorais Cultivadas
20.
J Biochem ; 135(2): 259-68, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-15047729

RESUMO

Hex is one of the homeobox genes suggested to be important for hematopoietic cell differentiation. However, its biological function and mechanism of transcriptional regulation in hematopoietic cells remain elusive. We have identified the regulatory region necessary for transcription of the mouse Hex gene in K562 leukemia cells through transient reporter assays involving various deletion mutants. This region, comprising +775 to +1177 in the first intron, had enhancer-like properties and showed high activity in other hematopoietic cell lines such as U937, HEL, and RAW264.7, but little activity in other Hex-expressing cell lines such as MH(1)C(1) and H4IIE hepatoma cells, suggesting that this region functions as a hematopoietic cell-specific enhancer-like element. Binding site mutation of hematopoietic transcription factors, such as GATAs and c-Myb present in the enhancer-like element, significantly decreased the luciferase reporter gene expression in K562 cells. Electrophoretic mobility shift assays showed that GATA-1, GATA-2, or c-Myb actually binds to three of these putative binding sites, and also suggested that several unidentified factors might interact with the enhancer-like element. Overexpression of GATA-1, GATA-2, or c-Myb stimulated the enhancer-like activity via these three binding sites. Thus, we conclude that Hex expression in hematopoietic cells is mainly regulated by GATA-1, GATA-2, and c-Myb via this intronic enhancer-like element.


Assuntos
Elementos Facilitadores Genéticos , Genes Homeobox , Sistema Hematopoético/citologia , Proteínas de Homeodomínio/genética , Animais , Sequência de Bases , Sítios de Ligação , Diferenciação Celular , Linhagem Celular , Ensaio de Desvio de Mobilidade Eletroforética/métodos , Genes Reporter , Sistema Hematopoético/metabolismo , Humanos , Células K562 , Luciferases/genética , Luciferases/metabolismo , Camundongos , Mutação , Proteínas Proto-Oncogênicas c-myb/metabolismo , Transativadores/metabolismo , Fatores de Transcrição/metabolismo
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