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1.
Chembiochem ; 24(3): e202200516, 2023 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-36399069

RESUMO

Bioprocessing of polyester waste has emerged as a promising tool in the quest for a cyclic plastic economy. One key step is the enzymatic breakdown of the polymer, and this entails a complicated pathway with substrates, intermediates, and products of variable size and solubility. We have elucidated this pathway for poly(ethylene terephthalate) (PET) and four enzymes. Specifically, we combined different kinetic measurements and a novel stochastic model and found that the ability to hydrolyze internal bonds in the polymer (endo-lytic activity) was a key parameter for overall enzyme performance. Endo-lytic activity promoted the release of soluble PET fragments with two or three aromatic rings, which, in turn, were broken down with remarkable efficiency (kcat /KM values of about 105  M-1 s-1 ) in the aqueous bulk. This meant that approximatly 70 % of the final, monoaromatic products were formed via soluble di- or tri-aromatic intermediates.


Assuntos
Hidrolases , Ácidos Ftálicos , Hidrolases/metabolismo , Polietilenotereftalatos/química , Ácidos Ftálicos/metabolismo , Etilenos
2.
J Biol Chem ; 296: 100504, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33675751

RESUMO

Lytic polysaccharide monooxygenases (LPMOs) are known to act synergistically with glycoside hydrolases in industrial cellulolytic cocktails. However, a few studies have reported severe impeding effects of C1-oxidizing LPMOs on the activity of reducing-end cellobiohydrolases. The mechanism for this effect remains unknown, but it may have important implications as reducing-end cellobiohydrolases make up a significant part of such cocktails. To elucidate whether the impeding effect is general for different reducing-end cellobiohydrolases and study the underlying mechanism, we conducted a comparative biochemical investigation of the cooperation between a C1-oxidizing LPMO from Thielavia terrestris and three reducing-end cellobiohydrolases; Trichoderma reesei (TrCel7A), T. terrestris (TtCel7A), and Myceliophthora heterothallica (MhCel7A). The enzymes were heterologously expressed in the same organism and thoroughly characterized biochemically. The data showed distinct differences in synergistic effects between the LPMO and the cellobiohydrolases; TrCel7A was severely impeded, TtCel7A was moderately impeded, while MhCel7A was slightly boosted by the LPMO. We investigated effects of C1-oxidations on cellulose chains on the activity of the cellobiohydrolases and found reduced activity against oxidized cellulose in steady-state and pre-steady-state experiments. The oxidations led to reduced maximal velocity of the cellobiohydrolases and reduced rates of substrate complexation. The extent of these effects differed for the cellobiohydrolases and scaled with the extent of the impeding effect observed in the synergy experiments. Based on these results, we suggest that C1-oxidized chain ends are poor attack sites for reducing-end cellobiohydrolases. The severity of the impeding effects varied considerably among the cellobiohydrolases, which may be relevant to consider for optimization of industrial cocktails.


Assuntos
Celulose 1,4-beta-Celobiosidase/metabolismo , Celulose/metabolismo , Proteínas Fúngicas/metabolismo , Oxigenases de Função Mista/metabolismo , Polissacarídeos/metabolismo , Hidrólise , Hypocreales/enzimologia , Oxirredução , Polissacarídeos/química , Sordariales/enzimologia
3.
J Biol Chem ; 295(6): 1454-1463, 2020 02 07.
Artigo em Inglês | MEDLINE | ID: mdl-31848226

RESUMO

Cellobiohydrolases effectively degrade cellulose and are of biotechnological interest because they can convert lignocellulosic biomass to fermentable sugars. Here, we implemented a fluorescence-based method for real-time measurements of complexation and decomplexation of the processive cellulase Cel7A and its insoluble substrate, cellulose. The method enabled detailed kinetic and thermodynamic analyses of ligand binding in a heterogeneous system. We studied WT Cel7A and several variants in which one or two of four highly conserved Trp residues in the binding tunnel had been replaced with Ala. WT Cel7A had on/off-rate constants of 1 × 105 m-1 s-1 and 5 × 10-3 s-1, respectively, reflecting the slow dynamics of a solid, polymeric ligand. Especially the off-rate constant was many orders of magnitude lower than typical values for small, soluble ligands. Binding rate and strength both were typically lower for the Trp variants, but effects of the substitutions were moderate and sometimes negligible. Hence, we propose that lowering the activation barrier for complexation is not a major driving force for the high conservation of the Trp residues. Using so-called Φ-factor analysis, we analyzed the kinetic and thermodynamic results for the variants. The results of this analysis suggested a transition state for complexation and decomplexation in which the reducing end of the ligand is close to the tunnel entrance (near Trp-40), whereas the rest of the binding tunnel is empty. We propose that this structure defines the highest free-energy barrier of the overall catalytic cycle and hence governs the turnover rate of this industrially important enzyme.


Assuntos
Celulase/metabolismo , Celulose/metabolismo , Proteínas Fúngicas/metabolismo , Trichoderma/metabolismo , Triptofano/metabolismo , Domínio Catalítico , Celulase/química , Ativação Enzimática , Proteínas Fúngicas/química , Cinética , Modelos Moleculares , Ligação Proteica , Especificidade por Substrato , Termodinâmica , Trichoderma/química , Triptofano/química
4.
Chembiochem ; 22(9): 1627-1637, 2021 05 04.
Artigo em Inglês | MEDLINE | ID: mdl-33351214

RESUMO

The potential of bioprocessing in a circular plastic economy has strongly stimulated research into the enzymatic degradation of different synthetic polymers. Particular interest has been devoted to the commonly used polyester, poly(ethylene terephthalate) (PET), and a number of PET hydrolases have been described. However, a kinetic framework for comparisons of PET hydrolases (or other plastic-degrading enzymes) acting on the insoluble substrate has not been established. Herein, we propose such a framework, which we have tested against kinetic measurements for four PET hydrolases. The analysis provided values of kcat and KM , as well as an apparent specificity constant in the conventional units of M-1 s-1 . These parameters, together with experimental values for the number of enzyme attack sites on the PET surface, enabled comparative analyses. A variant of the PET hydrolase from Ideonella sakaiensis was the most efficient enzyme at ambient conditions; it relied on a high kcat rather than a low KM . Moreover, both soluble and insoluble PET fragments were consistently hydrolyzed much faster than intact PET. This suggests that interactions between polymer strands slow down PET degradation, whereas the chemical steps of catalysis and the low accessibility associated with solid substrate were less important for the overall rate. Finally, the investigated enzymes showed a remarkable substrate affinity, and reached half the saturation rate on PET when the concentration of attack sites in the suspension was only about 50 nM. We propose that this is linked to nonspecific adsorption, which promotes the nearness of enzyme and attack sites.


Assuntos
Proteínas de Bactérias/metabolismo , Hidrolases/metabolismo , Polietilenotereftalatos/metabolismo , Biocatálise , Burkholderiales/metabolismo , Cinética , Polietilenotereftalatos/química , Especificidade por Substrato
5.
Biochem J ; 477(1): 99-110, 2020 01 17.
Artigo em Inglês | MEDLINE | ID: mdl-31816027

RESUMO

Cellobiohydrolase Cel7A is an industrial important enzyme that breaks down cellulose by a complex processive mechanism. The enzyme threads the reducing end of a cellulose strand into its tunnel-shaped catalytic domain and progresses along the strand while sequentially releasing the disaccharide cellobiose. While some molecular details of this intricate process have emerged, general structure-function relationships for Cel7A remain poorly elucidated. One interesting aspect is the occurrence of particularly strong ligand interactions in the product binding site. In this work, we analyze these interactions in Cel7A from Trichoderma reesei with special emphasis on the Arg251 and Arg394 residues. We made extensive biochemical characterization of enzymes that were mutated in these two positions and showed that the arginine residues contributed strongly to product binding. Specifically, ∼50% of the total standard free energy of product binding could be ascribed to four hydrogen bonds to Arg251 and Arg394, which had previously been identified in crystal structures. Mutation of either Arg251 or Arg394 lowered production inhibition of Cel7A, but at the same time altered the enzyme product profile and resulted in ∼50% reduction in both processivity and hydrolytic activity. The position of the two arginine residues closely matches the two-fold screw axis symmetry of the substrate, and this energetically favors the productive enzyme-substrate complex. Our results indicate that the strong and specific ligand interactions of Arg251 and Arg394 provide a simple proofreading system that controls the step length during consecutive hydrolysis and minimizes dead time associated with transient, non-productive complexes.


Assuntos
Celulose 1,4-beta-Celobiosidase/química , Proteínas Fúngicas/química , Trichoderma/enzimologia , Sítios de Ligação , Domínio Catalítico , Hidrólise , Cinética
6.
Biochem J ; 477(10): 1971-1982, 2020 05 29.
Artigo em Inglês | MEDLINE | ID: mdl-32391552

RESUMO

The kinetic theory of enzymes that modify insoluble substrates is still underdeveloped, despite the prevalence of this type of reaction both in vivo and industrial applications. Here, we present a steady-state kinetic approach to investigate inhibition occurring at the solid-liquid interface. We propose to conduct experiments under enzyme excess (E0 ≫ S0), i.e. the opposite limit compared with the conventional Michaelis-Menten framework. This inverse condition is practical for insoluble substrates and elucidates how the inhibitor reduces enzyme activity through binding to the substrate. We claim that this type of inhibition is common for interfacial enzyme reactions because substrate accessibility is low, and we show that it can be analyzed by experiments and rate equations that are analogous to the conventional approach, except that the roles of enzyme and substrate have been swapped. To illustrate the approach, we investigated the major cellulases from Trichoderma reesei (Cel6A and Cel7A) acting on insoluble cellulose. As model inhibitors, we used catalytically inactive variants of Cel6A and Cel7A. We made so-called inverse Michaelis-Menten curves at different concentrations of inhibitors and found that a new rate equation accounted well for the data. In most cases, we found a mixed type of surface-site inhibition mechanism, and this probably reflected that the inhibitor both competed with the enzyme for the productive binding-sites (competitive inhibition) and hampered the processive movement on the surface (uncompetitive inhibition). These results give new insights into the complex interplay of Cel7A and Cel6A on cellulose and the approach may be applicable to other heterogeneous enzyme reactions.


Assuntos
Celulases/metabolismo , Inibidores Enzimáticos/metabolismo , Enzimas/metabolismo , Trichoderma/enzimologia , Sítios de Ligação , Celulose/metabolismo , Hidrólise , Cinética
7.
J Biol Chem ; 294(6): 1807-1815, 2019 02 08.
Artigo em Inglês | MEDLINE | ID: mdl-30538133

RESUMO

Glycoside hydrolase family 7 (GH7) cellulases are some of the most efficient degraders of cellulose, making them particularly relevant for industries seeking to produce renewable fuels from lignocellulosic biomass. The secretome of the cellulolytic model fungus Trichoderma reesei contains two GH7s, termed TrCel7A and TrCel7B. Despite having high structural and sequence similarities, the two enzymes are functionally quite different. TrCel7A is an exolytic, processive cellobiohydrolase (CBH), with high activity on crystalline cellulose, whereas TrCel7B is an endoglucanase (EG) with a preference for more amorphous cellulose. At the structural level, these functional differences are usually ascribed to the flexible loops that cover the substrate-binding areas. TrCel7A has an extensive tunnel created by eight peripheral loops, and the absence of four of these loops in TrCel7B makes its catalytic domain a more open cleft. To investigate the structure-function relationships of these loops, here we produced and kinetically characterized several variants in which four loops unique to TrCel7A were individually deleted to resemble the arrangement in the TrCel7B structure. Analysis of a range of kinetic parameters consistently indicated that the B2 loop, covering the substrate-binding subsites -3 and -4 in TrCel7A, was a key determinant for the difference in CBH- or EG-like behavior between TrCel7A and TrCel7B. Conversely, the B3 and B4 loops, located closer to the catalytic site in TrCel7A, were less important for these activities. We surmise that these results could be useful both in further mechanistic investigations and for guiding engineering efforts of this industrially important enzyme family.


Assuntos
Sequência de Aminoácidos , Celulose 1,4-beta-Celobiosidase , Proteínas Fúngicas , Deleção de Sequência , Trichoderma , Celulose 1,4-beta-Celobiosidase/química , Celulose 1,4-beta-Celobiosidase/genética , Cristalografia por Raios X , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Estrutura Secundária de Proteína , Trichoderma/enzimologia , Trichoderma/genética
8.
Anal Biochem ; 607: 113873, 2020 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-32771375

RESUMO

Enzymatic breakdown of plastic has emerged as a promising green technology, and its implementation will require assays that are accurate, reliable and convenient. Here, we assess two principles to monitor the hydrolysis of the common polyester, polyethylene terephthalate (PET). Hydrolysis of PET gives rise to heterogeneous products of different sizes and solubility, and as a result, specific experimental methods detect different activity levels. To avoid errors and to get a thorough picture of enzyme reactions, it is beneficial to combine several detection techniques. The two methods described herein are quantitative and complementary, and detect respectively the amount of soluble aromatic products and the formation of the constitutive aromatic monomers. A combined quantification approach identifies pitfalls in the characterization of these enzymes and provides mechanistic insight, but for screening and/or comparative studies of PET hydrolases we recommend a plate reader-based assay with suspended PET powder. This assay is rapid and simple, but still provides a good measure of the initial rates, which may be used in comparative biochemical analyses of these enzymes.


Assuntos
Hidrolases/metabolismo , Polietilenotereftalatos/química , Técnicas Biossensoriais , Hidrolases de Éster Carboxílico/metabolismo , Catálise , Cromatografia Líquida de Alta Pressão , Cromatografia de Fase Reversa , Hidrocarbonetos Aromáticos/química , Hidrólise , Solubilidade , Espectrofotometria , Suspensões/química , Água
9.
Biotechnol Bioeng ; 117(2): 382-391, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31631319

RESUMO

Understanding the pH effect of cellulolytic enzymes is of great technological importance. In this study, we have examined the influence of pH on activity and stability for central cellulases (Cel7A, Cel7B, Cel6A from Trichoderma reesei, and Cel7A from Rasamsonia emersonii). We systematically changed pH from 2 to 7, temperature from 20°C to 70°C, and used both soluble (4-nitrophenyl ß- d-lactopyranoside [pNPL]) and insoluble (Avicel) substrates at different concentrations. Collective interpretation of these data provided new insights. An unusual tolerance to acidic conditions was observed for both investigated Cel7As, but only on real insoluble cellulose. In contrast, pH profiles on pNPL were bell-shaped with a strong loss of activity both above and below the optimal pH for all four enzymes. On a practical level, these observations call for the caution of the common practice of using soluble substrates for the general characterization of pH effects on cellulase activity. Kinetic modeling of the experimental data suggested that the nucleophile of Cel7A experiences a strong downward shift in pKa upon complexation with an insoluble substrate. This shift was less pronounced for Cel7B, Cel6A, and for Cel7A acting on the soluble substrate, and we hypothesize that these differences are related to the accessibility of water to the binding region of the Michaelis complex.


Assuntos
Celulases/química , Celulases/metabolismo , Celulose/química , Celulose/metabolismo , Sítios de Ligação , Celulases/genética , Estabilidade Enzimática , Eurotiales/enzimologia , Eurotiales/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Concentração de Íons de Hidrogênio , Hypocreales/enzimologia , Hypocreales/genética , Cinética , Modelos Moleculares , Ligação Proteica , Temperatura
10.
Biochem J ; 476(15): 2157-2172, 2019 08 05.
Artigo em Inglês | MEDLINE | ID: mdl-31311837

RESUMO

Cellobiohydrolases (CBHs) from glycoside hydrolase family 6 (GH6) make up an important part of the secretome in many cellulolytic fungi. They are also of technical interest, particularly because they are part of the enzyme cocktails that are used for the industrial breakdown of lignocellulosic biomass. Nevertheless, functional studies of GH6 CBHs are scarce and focused on a few model enzymes. To elucidate functional breadth among GH6 CBHs, we conducted a comparative biochemical study of seven GH6 CBHs originating from fungi living in different habitats, in addition to one enzyme variant. The enzyme sequences were investigated by phylogenetic analyses to ensure that they were not closely related phylogenetically. The selected enzymes were all heterologously expressed in Aspergillus oryzae, purified and thoroughly characterized biochemically. This approach allowed direct comparisons of functional data, and the results revealed substantial variability. For example, the adsorption capacity on cellulose spanned two orders of magnitude and kinetic parameters, derived from two independent steady-state methods also varied significantly. While the different functional parameters covered wide ranges, they were not independent since they changed in parallel between two poles. One pole was characterized by strong substrate interactions, high adsorption capacity and low turnover number while the other showed weak substrate interactions, poor adsorption and high turnover. The investigated enzymes essentially defined a continuum between these two opposites, and this scaling of functional parameters raises interesting questions regarding functional plasticity and evolution of GH6 CBHs.


Assuntos
Celulose 1,4-beta-Celobiosidase , Evolução Molecular , Proteínas Fúngicas , Fungos , Filogenia , Celulose 1,4-beta-Celobiosidase/química , Celulose 1,4-beta-Celobiosidase/genética , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Fungos/enzimologia , Fungos/genética , Especificidade da Espécie
11.
Anal Biochem ; 586: 113411, 2019 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-31520594

RESUMO

Measurement of steady-state rates (vSS) is straightforward in standard enzymology with soluble substrate, and it has been instrumental for comparative biochemical analyses within this area. For insoluble substrate, however, experimental values of vss remain controversial, and this has strongly limited the amount and quality of comparative analyses for cellulases and other enzymes that act on the surface of an insoluble substrate. In the current work, we have measured progress curves over a wide range of conditions for two cellulases, TrCel6A and TrCel7A from Trichoderma reesei, acting on their natural, insoluble substrate, cellulose. Based on this, we consider practical compromises for the determination of experimental vSS values, and propose a basic protocol that provides representative reaction rates and is experimentally simple so that larger groups of enzymes and conditions can be readily assayed with standard laboratory equipment. We surmise that the suggested experimental approach can be useful in comparative biochemical studies of cellulases; an area that remains poorly developed.


Assuntos
Produtos Biológicos/metabolismo , Celulases/metabolismo , Celulose/metabolismo , Produtos Biológicos/química , Celulose/química , Cinética , Solubilidade , Propriedades de Superfície , Trichoderma/enzimologia
12.
Biotechnol Bioeng ; 115(4): 831-838, 2018 04.
Artigo em Inglês | MEDLINE | ID: mdl-29240229

RESUMO

We have measured activity and substrate affinity of the thermostable cellobiohydrolase, Cel7A, from Rasamsonia emersonii over a broad range of temperatures. For the wild type enzyme, which does not have a Carbohydrate Binding Module (CBM), higher temperature only led to moderately increased activity against cellulose, and we ascribed this to a pronounced, temperature induced desorption of enzyme from the substrate surface. We also tested a "high affinity" variant of R. emersonii Cel7A with a linker and CBM from a related enzyme. At room temperature, the activity of the variant was similar to the wild type, but the variant was more accelerated by temperature and about two-fold faster around 70 °C. This better thermoactivation of the high-affinity variant could not be linked to differences in stability or the catalytic process, but coincided with less desorption as temperature increased. Based on these observations and earlier reports on moderate thermoactivation of cellulases, we suggest that better cellulolytic activity at industrially relevant temperatures may be attained by engineering improved substrate affinity into enzymes that already possess good thermostability.


Assuntos
Ascomicetos/enzimologia , Celulose 1,4-beta-Celobiosidase/metabolismo , Proteínas Fúngicas/metabolismo , Temperatura Alta , Catálise , Domínio Catalítico , Celulose/metabolismo , Colorimetria , Glicosídeos/metabolismo , Himecromona/análogos & derivados , Himecromona/metabolismo , Ligação Proteica , Estabilidade Proteica
13.
Biochemistry ; 56(1): 167-178, 2017 Jan 10.
Artigo em Inglês | MEDLINE | ID: mdl-28026938

RESUMO

Cellobiohydrolases (CBHs) make up an important group of enzymes for both natural carbon cycling and industrial deconstruction of lignocellulosic biomass. The consecutive hydrolysis of one cellulose strand relies on an intricate pattern of enzyme-substrate interactions in the long, tunnel-shaped binding site of the CBH. In this work, we have investigated the initial complexation mode with cellulose of the most thoroughly studied CBH, Cel7A from Hypocrea jecorina (HjCel7A). We found that HjCel7A predominantly produces glucose when it initiates a processive run on insoluble microcrystalline cellulose, confirming the validity of an even and odd product ratio as an estimate of processivity. Moreover, the glucose released from cellulose was predominantly α-glucose. A link between the initial binding mode of the enzyme and the reducing end configuration was investigated by inhibition studies with the two anomers of cellobiose. A clear preference for ß-cellobiose in product binding site +2 was observed for HjCel7A, but not the homologous endoglucanase, HjCe7B. Possible relationships between this anomeric preference in the product site and the prevalence of odd-numbered initial-cut products are discussed, and a correlation between processivity and anomer selectivity is proposed.


Assuntos
Celobiose/metabolismo , Celulose 1,4-beta-Celobiosidase/metabolismo , Proteínas Fúngicas/metabolismo , Hypocrea/enzimologia , Algoritmos , Técnicas Biossensoriais , Celobiose/química , Celulose/análogos & derivados , Celulose/química , Celulose/metabolismo , Celulose 1,4-beta-Celobiosidase/química , Cromatografia Líquida , Cristalografia por Raios X , Proteínas Fúngicas/química , Glucose/química , Glucose/metabolismo , Hypocrea/metabolismo , Isoenzimas/química , Isoenzimas/metabolismo , Cinética , Espectrometria de Massas , Modelos Moleculares , Estrutura Molecular , Ligação Proteica , Domínios Proteicos , Especificidade por Substrato , Tetroses/química , Tetroses/metabolismo
14.
J Biol Chem ; 291(50): 26013-26023, 2016 Dec 09.
Artigo em Inglês | MEDLINE | ID: mdl-27780868

RESUMO

Structural polysaccharides like cellulose and chitin are abundant and their enzymatic degradation to soluble sugars is an important route in green chemistry. Processive glycoside hydrolases (GHs), like cellobiohydrolase Cel7A of Trichoderma reesei (TrCel7A) are key components of efficient enzyme systems. TrCel7A consists of a catalytic domain (CD) and a smaller carbohydrate-binding module (CBM) connected through the glycosylated linker peptide. A tunnel-shaped active site rests in the CD and contains 10 glucose unit binding sites. The active site of TrCel7A is lined with four Trp residues with two of them, Trp-40 and Trp-38, in the substrate binding sites near the tunnel entrance. Although addressed in numerous studies the elucidation of the role of CBM and active site aromatics has been obscured by a complex multistep mechanism of processive GHs. Here we studied the role of the CBM-linker and Trp-38 of TrCel7A with respect to binding affinity, on- and off-rates, processivity, and synergism with endoglucanase. The CBM-linker increased the on-rate and substrate affinity of the enzyme. The Trp-38 to Ala substitution resulted in increased off-rates and decreased processivity. The effect of the Trp-38 to Ala substitution on on-rates was strongly dependent on the presence of the CBM-linker. This compensation between CBM-linker and Trp-38 indicates synergism between CBM-linker and CD in feeding the cellulose chain into the active site. The inter-domain synergism was pre-requisite for the efficient degradation of cellulose in the presence of endoglucanase.


Assuntos
Celulase/química , Celulose/química , Proteínas Fúngicas/química , Trichoderma/enzimologia , Domínio Catalítico
15.
Biochim Biophys Acta Proteins Proteom ; 1865(12): 1739-1745, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-28844741

RESUMO

Cellulose degrading fungi such as Hypocrea jecorina secrete several cellulases including the two cellobiohydrolases (CBHs) Cel6A and Cel7A. The two CBHs differ in catalytic mechanism, attack different ends, belong to different families, but are both processive multi-domain enzymes that are essential in the hydrolysis of cellulose. Here we present a direct kinetic comparison of these two enzymes acting on insoluble cellulose. We used both continuous- and end-point assays under either enzyme- or substrate excess, and found distinct kinetic differences between the two CBHs. Cel6A was catalytically superior with a maximal rate over four times higher than Cel7A. Conversely, the ability of Cel6A to attack diverse structures on the cellulose surface was inferior to Cel7A. This latter difference was pronounced as the density of attack sites for Cel7A was almost an order of magnitude higher compared to Cel6A. We conclude that Cel6A is a fast but selective enzyme and that Cel7A is slower, but promiscuous. One consequence of this is that Cel6A is more effective when substrate is plentiful, while Cel7A excels when substrate is limiting. These diverse kinetic properties of Cel6A and Cel7A might elucidate why both cellobiohydrolases are prominent in cellulolytic degrading fungi.


Assuntos
Celulose 1,4-beta-Celobiosidase/metabolismo , Hypocrea/enzimologia , Biocatálise , Cinética
16.
Biotechnol Bioeng ; 114(3): 696-700, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-27617666

RESUMO

Synergy between cellulolytic enzymes is important for their industrial utilization, and numerous studies have addressed the problem of how to optimize the composition of enzyme cocktails with respect to this. The degree of synergy (DS) may change with substrate conversion, and some studies have suggested a maximum in DS early in the process. Here, we systematically investigated interrelationships of DS and conversion in a model system covering a wide range of experimental conditions. The results did not reveal any correlation between DS and contact time, but when plotted against the degree of substrate conversion we saw a systematic increase in DS. We suggest that this is linked to a decreasing reactivity of the substrate. Hence, synergy became increasingly important as the recalcitrance of the remaining substrate grew. Such conversion dependent changes in DS appear to be important both in mechanistic studies and attempts to find industrial enzymes blends with optimal synergy. Biotechnol. Bioeng. 2017;114: 696-700. © 2016 Wiley Periodicals, Inc.


Assuntos
Celulase/química , Celulase/metabolismo , Celulose/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/metabolismo , Celulose/análise , Hidrólise , Hypocrea/enzimologia , Cinética
17.
Biotechnol Bioeng ; 114(1): 53-62, 2017 01.
Artigo em Inglês | MEDLINE | ID: mdl-27424518

RESUMO

Cel7A cellobiohydrolases perform processive hydrolysis on one strand of cellulose, which is threaded through the enzyme's substrate binding tunnel. The tunnel structure results from a groove in the catalytic domain, which is covered by a number of loops. These loops have been identified as potential targets for engineering of this industrially important enzyme family, but only few systematic studies on this have been made. Here we show that two asparagine residues (N194 and N197) positioned in the loop covering the glucopyranose subsite -4 (recently denoted B2 loop) of the thermostable Cel7A from Rasamsonia emersonii had profound effects on both substrate interactions and catalytic efficacy. At room temperature the double mutant N194A/N197A showed strongly reduced substrate affinity with a water-cellulose partitioning coefficient threefold lower than the wild type. Yet, this variant was catalytically efficient with a maximal turnover about twice as high as the wild type. Analogous but smaller changes were found for the single mutants. Analysis of these changes in affinity and kinetics as a function of temperature, led to the conclusion that replacement of N194 and particularly N197 with alanine leads to faster enzyme-substrate dissociation. Conversely, these residues appeared to have little or no effect on the rate of association. We suggest that the controlled adjustment of the enzyme-substrate dissociation prompts faster cellulolytic enzymes. Biotechnol. Bioeng. 2017;114: 53-62. © 2016 Wiley Periodicals, Inc.


Assuntos
Celulose 1,4-beta-Celobiosidase/genética , Celulose 1,4-beta-Celobiosidase/metabolismo , Celulose/metabolismo , Eurotiales/enzimologia , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Engenharia de Proteínas/métodos , Celulose/análise , Celulose 1,4-beta-Celobiosidase/química , Eurotiales/genética , Proteínas Fúngicas/química , Cinética , Modelos Moleculares , Temperatura
18.
Biotechnol Bioeng ; 114(8): 1639-1647, 2017 08.
Artigo em Inglês | MEDLINE | ID: mdl-28244592

RESUMO

Synergy between cellulolytic enzymes is essential in both natural and industrial breakdown of biomass. In addition to synergy between endo- and exo-lytic enzymes, a lesser known but equally conspicuous synergy occurs among exo-acting, processive cellobiohydrolases (CBHs) such as Cel7A and Cel6A from Hypocrea jecorina. We studied this system using microcrystalline cellulose as substrate and found a degree of synergy between 1.3 and 2.2 depending on the experimental conditions. Synergy between enzyme variants without the carbohydrate binding module (CBM) and its linker was strongly reduced compared to the wild types. One plausible interpretation of this is that exo-exo synergy depends on the targeting role of the CBM. Many earlier works have proposed that exo-exo synergy was caused by an auxiliary endo-lytic activity of Cel6A. However, biochemical data from different assays suggested that the endo-lytic activity of both Cel6A and Cel7A were 103 -104 times lower than the common endoglucanase, Cel7B, from the same organism. Moreover, the endo-lytic activity of Cel7A was 2-3-fold higher than for Cel6A, and we suggest that endo-like activity of Cel6A cannot be the main cause for the observed synergy. Rather, we suggest the exo-exo synergy found here depends on different specificities of the enzymes possibly governed by their CBMs. Biotechnol. Bioeng. 2017;114: 1639-1647. © 2017 Wiley Periodicals, Inc.


Assuntos
Celulose/química , Proteínas Fúngicas/química , Hypocrea/enzimologia , Sítios de Ligação , Sinergismo Farmacológico , Ativação Enzimática , Complexos Multienzimáticos , Ligação Proteica , Especificidade por Substrato
19.
J Biol Chem ; 290(36): 22203-11, 2015 Sep 04.
Artigo em Inglês | MEDLINE | ID: mdl-26183776

RESUMO

Kinetic and thermodynamic data have been analyzed according to transition state theory and a simplified reaction scheme for the enzymatic hydrolysis of insoluble cellulose. For the cellobiohydrolase Cel7A from Hypocrea jecorina (Trichoderma reesei), we were able to measure or collect relevant values for all stable and activated complexes defined by the reaction scheme and hence propose a free energy diagram for the full heterogeneous process. For other Cel7A enzymes, including variants with and without carbohydrate binding module (CBM), we obtained activation parameters for the association and dissociation of the enzyme-substrate complex. The results showed that the kinetics of enzyme-substrate association (i.e. formation of the Michaelis complex) was almost entirely entropy-controlled and that the activation entropy corresponded approximately to the loss of translational and rotational degrees of freedom of the dissolved enzyme. This implied that the transition state occurred early in the path where the enzyme has lost these degrees of freedom but not yet established extensive contact interactions in the binding tunnel. For dissociation, a similar analysis suggested that the transition state was late in the path where most enzyme-substrate contacts were broken. Activation enthalpies revealed that the rate of dissociation was far more temperature-sensitive than the rates of both association and the inner catalytic cycle. Comparisons of one- and two-domain variants showed that the CBM had no influence on the transition state for association but increased the free energy barrier for dissociation. Hence, the CBM appeared to promote the stability of the complex by delaying dissociation rather than accelerating association.


Assuntos
Celulose 1,4-beta-Celobiosidase/metabolismo , Celulose/metabolismo , Proteínas Fúngicas/metabolismo , Termodinâmica , Algoritmos , Biocatálise , Celulose 1,4-beta-Celobiosidase/genética , Entropia , Proteínas Fúngicas/genética , Variação Genética , Hidrólise , Hypocrea/enzimologia , Hypocrea/genética , Isoenzimas/genética , Isoenzimas/metabolismo , Cinética , Ligação Proteica , Especificidade por Substrato , Trichoderma/enzimologia , Trichoderma/genética
20.
J Biol Chem ; 290(36): 22193-202, 2015 Sep 04.
Artigo em Inglês | MEDLINE | ID: mdl-26183777

RESUMO

We measured hydrolytic rates of four purified cellulases in small increments of temperature (10-50 °C) and substrate loads (0-100 g/liter) and analyzed the data by a steady state kinetic model that accounts for the processive mechanism. We used wild type cellobiohydrolases (Cel7A) from mesophilic Hypocrea jecorina and thermophilic Rasamsonia emersonii and two variants of these enzymes designed to elucidate the role of the carbohydrate binding module (CBM). We consistently found that the maximal rate increased strongly with temperature, whereas the affinity for the insoluble substrate decreased, and as a result, the effect of temperature depended strongly on the substrate load. Thus, temperature had little or no effect on the hydrolytic rate in dilute substrate suspensions, whereas strong temperature activation (Q10 values up to 2.6) was observed at saturating substrate loads. The CBM had a dual effect on the activity. On one hand, it diminished the tendency of heat-induced desorption, but on the other hand, it had a pronounced negative effect on the maximal rate, which was 2-fold larger in variants without CBM throughout the investigated temperature range. We conclude that although the CBM is beneficial for affinity it slows down the catalytic process. Cel7A from the thermophilic organism was moderately more activated by temperature than the mesophilic analog. This is in accord with general theories on enzyme temperature adaptation and possibly relevant information for the selection of technical cellulases.


Assuntos
Celulose 1,4-beta-Celobiosidase/metabolismo , Celulose/metabolismo , Proteínas Fúngicas/metabolismo , Temperatura , Algoritmos , Ascomicetos/enzimologia , Ascomicetos/genética , Ligação Competitiva , Celobiose/metabolismo , Celulose 1,4-beta-Celobiosidase/genética , Eletroforese em Gel de Poliacrilamida , Proteínas Fúngicas/genética , Variação Genética , Hidrólise , Hypocrea/enzimologia , Hypocrea/genética , Isoenzimas/genética , Isoenzimas/metabolismo , Cinética , Ligação Proteica , Especificidade por Substrato , Trichoderma/enzimologia , Trichoderma/genética
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