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1.
ChemMedChem ; 16(14): 2217-2222, 2021 07 20.
Artigo em Inglês | MEDLINE | ID: mdl-33843142

RESUMO

Amides from indole-3-glyoxylic acid and 4-benzoyl-2-methylpiperazine, which are related to entry inhibitors developed by Bristol-Myers Squibb (BMS), have been synthesized with aliphatic chains located at the C7 position of the indole ring. These spacers contain an azido group suitable for the well-known Cu(I)-catalyzed (3+2)-cycloaddition or an activated triple bond for the nucleophilic addition of thiols under physiological conditions. Reaction with polyols (ß-cyclodextrin and hyperbranched polyglycerol) decorated with complementary click partners has afforded polyol-BMS-like conjugates that are not cytotoxic (TZM.bl cells) and retain the activity against R5-HIV-1NLAD8 isolates. Thus, potential vaginal microbicides based on entry inhibitors, which can be called of 4th generation, are reported here for the first time.


Assuntos
Amidas/farmacologia , Fármacos Anti-HIV/farmacologia , Glicerol/farmacologia , Inibidores da Fusão de HIV/farmacologia , Transcriptase Reversa do HIV/antagonistas & inibidores , HIV-1/efeitos dos fármacos , Polímeros/farmacologia , beta-Ciclodextrinas/farmacologia , Amidas/química , Fármacos Anti-HIV/síntese química , Fármacos Anti-HIV/química , Relação Dose-Resposta a Droga , Glicerol/química , Inibidores da Fusão de HIV/síntese química , Inibidores da Fusão de HIV/química , Transcriptase Reversa do HIV/metabolismo , HIV-1/metabolismo , Humanos , Estrutura Molecular , Polímeros/química , Relação Estrutura-Atividade , beta-Ciclodextrinas/química
2.
Bioorg Med Chem ; 18(13): 4661-73, 2010 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-20605472

RESUMO

Four double-drug HIV NRTI/NNRTI inhibitors 15a-d of the type [d4U]-spacer-[HI-236] in which the spacer is varied as 1-butynyl (15a), propargyl-1-PEG (15b), propargyl-2-PEG (15c) and propargyl-4-PEG (15d) have been synthesized and biologically evaluated as RT inhibitors against HIV-1. The key step in their synthesis involved a Sonogashira coupling of 5-iodo d4U's benzoate with an alkynylated tethered HI-236 precursor followed by introduction of the HI-236 thiourea functionality. Biological evaluation in both cell-culture (MT-2 cells) as well as using an in vitro RT assay revealed 15a-c to be all more active than d4T. However, overall the results indicate the derivatives are acting as chain-extended NNRTIs in which for 15b-d the nucleoside component is likely situated outside of the pocket but with no evidence for any synergistic double binding between the NRTI and NNRTI sites. This is attributed, in part, to the lack of phosphorylation of the nucleoside component of the double-drug as a result of kinase recognition failure, which is not improved upon with the phosphoramidate of 15d incorporating a 4-PEG spacer.


Assuntos
Fármacos Anti-HIV/química , Transcriptase Reversa do HIV/antagonistas & inibidores , HIV-1/enzimologia , Piridinas/química , Inibidores da Transcriptase Reversa/química , Tioureia/análogos & derivados , Fármacos Anti-HIV/síntese química , Fármacos Anti-HIV/toxicidade , Sítios de Ligação , Linhagem Celular , Simulação por Computador , Desenho de Fármacos , Transcriptase Reversa do HIV/metabolismo , Humanos , Polietilenoglicóis/química , Piridinas/síntese química , Piridinas/farmacologia , Inibidores da Transcriptase Reversa/síntese química , Inibidores da Transcriptase Reversa/farmacologia , Tioureia/síntese química , Tioureia/química , Tioureia/farmacologia
3.
Peptides ; 27(7): 1732-7, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16574276

RESUMO

An antifungal protein with a molecular mass of 11 kDa and a lysine-rich N-terminal sequence was isolated from the seeds of the pea Pisum sativum var. arvense Poir. The antifungal protein was unadsorbed on DEAE-cellulose but adsorbed on Affi-gel blue gel and CM-cellulose. It exerted antifungal activity against Physalospora piricola with an IC50 of 0.62 microM, and also antifungal activity against Fusarium oxysporum and Mycosphaerella arachidicola. It inhibited human immunodeficiency virus type 1 reverse transcriptase with an IC50 of 4.7 microM.


Assuntos
Antifúngicos/farmacologia , Peptídeos/química , Pisum sativum/metabolismo , Extratos Vegetais/metabolismo , Aminoácidos/química , Sistema Livre de Células , Celulose/química , Etanolaminas/química , Fusarium/metabolismo , Transcriptase Reversa do HIV/metabolismo , Concentração Inibidora 50 , Testes de Sensibilidade Microbiana , Extratos Vegetais/farmacologia , Biossíntese de Proteínas , Tripsina/farmacologia
4.
J Mol Biol ; 296(2): 613-32, 2000 Feb 18.
Artigo em Inglês | MEDLINE | ID: mdl-10669612

RESUMO

Reverse transcriptase (RT) serves as the replicative polymerase for retroviruses by using RNA and DNA-directed DNA polymerase activities coupled with a ribonuclease H activity to synthesize a double-stranded DNA copy of the single-stranded RNA genome. In an effort to obtain detailed structural information about nucleic acid interactions with reverse transcriptase, we have determined crystal structures at 2.3 A resolution of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed to blunt-ended DNA in three distinct lattices. This fragment includes the fingers and palm domains from Moloney murine leukemia virus reverse transcriptase. We have also determined the crystal structure at 3.0 A resolution of the fragment complexed to DNA with a single-stranded template overhang resembling a template-primer substrate. Protein-DNA interactions, which are nearly identical in each of the three lattices, involve four conserved residues in the fingers domain, Asp114, Arg116, Asn119 and Gly191. DNA atoms involved in the interactions include the 3'-OH group from the primer strand and minor groove base atoms and sugar atoms from the n-2 and n-3 positions of the template strand, where n is the template base that would pair with an incoming nucleotide. The single-stranded template overhang adopts two different conformations in the asymmetric unit interacting with residues in the beta4-beta5 loop (beta3-beta4 in HIV-1 RT). Our fragment-DNA complexes are distinct from previously reported complexes of DNA bound to HIV-1 RT but related in the types of interactions formed between protein and DNA. In addition, the DNA in all of these complexes is bound in the same cleft of the enzyme. Through site-directed mutagenesis, we have substituted residues that are involved in binding DNA in our crystal structures and have characterized the resulting enzymes. We now propose that nucleic acid binding to the fingers domain may play a role in translocation of nucleic acid during processive DNA synthesis and suggest that our complex may represent an intermediate in this process.


Assuntos
Primers do DNA/metabolismo , Vírus da Leucemia Murina de Moloney/enzimologia , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/metabolismo , DNA Polimerase Dirigida por RNA/química , DNA Polimerase Dirigida por RNA/metabolismo , Sequência de Aminoácidos , Animais , Sequência de Bases , Sítios de Ligação , Biopolímeros/química , Biopolímeros/genética , Biopolímeros/metabolismo , Sequência Conservada/genética , Cristalização , Cristalografia por Raios X , DNA/biossíntese , DNA/química , DNA/genética , DNA/metabolismo , Primers do DNA/química , Primers do DNA/genética , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Transcriptase Reversa do HIV/química , Transcriptase Reversa do HIV/metabolismo , Ligação de Hidrogênio , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Conformação de Ácido Nucleico , Fragmentos de Peptídeos/genética , Estrutura Terciária de Proteína , RNA Mensageiro/química , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , DNA Polimerase Dirigida por RNA/genética , Coelhos , Moldes Genéticos
5.
Int J Biochem Cell Biol ; 29(11): 1285-95, 1997 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-9451826

RESUMO

Antisense oligonucleotides (AONs) targeted to the R-region near the 5'-LTR of HIV-1 genomic RNA inhibited both the synthesis of (-) strong stop DNA and the first template-switch reaction catalysed by HIV-1 reverse transcriptase (RT) in vitro. The 18 nucleotide (nt) AONs used were identical in sequence but differed in the sugar component of the 3'-terminal nucleotide, with either 2'-deoxy-D-ribose (DNA), 2'-deoxy-L-ribose (L), or arabinose (ARA) in this position. All three AONs hybridized to complementary 18 nt RNA (T(m) approximately 70 degrees C) and specifically interacted with the target RNA HIV-1 sequence at 37 degrees C. L was unable to serve as primer for RT-catalysed DNA polymerization, whereas priming from ARA was about 30% that noted with DNA. Each of the three AONs resulted in similar 85-95% decreases in the amount of full length (-) strong stop DNA and up to 75% decreases in the first template-switch reaction products formed by RT, implying that elongation of the AONs did not enhance the inhibitory activity in vitro. A concomitant increase in a truncated DNA product corresponding to polymerization termination at the 5'-end of the AON was noted, indicating that RT was unable to displace the AON. Interestingly, near maximal inhibition in vitro an AON:target RNA template ratio of 1:1 was noted. Our results confirm the validity of our in vitro system for the analysis of potential antisense oligonucleotide inhibitors, and suggest that antisense oligonucleotides directed to the R-region of HIV-1 RNA may be effective inhibitors of the initial stages of HIV-1 proviral DNA synthesis.


Assuntos
DNA/biossíntese , Genoma Viral , Transcriptase Reversa do HIV/metabolismo , Oligonucleotídeos Antissenso/farmacologia , Sequências Repetitivas de Ácido Nucleico , Moldes Genéticos , Biopolímeros , Catálise , Estrutura Molecular
6.
Antiviral Res ; 35(2): 123-9, 1997 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-9217249

RESUMO

We now report the confirmation of the work of Hollingshead et al. (1995) on development of a cell based hollow fiber (HF) system for evaluating potential anti-AIDS drugs in vivo using conventional mice rather than SCID mice. CD4 +, CEM-SS cells infected with HIV/1, strain RF, at a multiplicity of infection of 0.1 were placed into HFs. The fibers were implanted into the peritoneal cavity of outbred Swiss mice. Using this model, the antiviral activity of azidothymidine (AZT) at doses of approximately 150, 75 and 37.5 mg/kg/day was evaluated by administering AZT to the mice in drinking water. Upon fiber removal on day 6, AZT treatment was shown to significantly increase CEM cell viability over the untreated, virus control group and significantly reduced the levels of HIV p24 and HIV RT activity.


Assuntos
Fármacos Anti-HIV/farmacologia , Linfócitos T CD4-Positivos/virologia , Avaliação Pré-Clínica de Medicamentos/métodos , HIV-1/efeitos dos fármacos , Membranas Artificiais , Resinas Acrílicas , Animais , Linfócitos T CD4-Positivos/citologia , Linfócitos T CD4-Positivos/transplante , Sobrevivência Celular , Efeito Citopatogênico Viral , Proteína do Núcleo p24 do HIV/análise , Transcriptase Reversa do HIV/metabolismo , HIV-1/crescimento & desenvolvimento , HIV-1/metabolismo , Humanos , Camundongos , Permeabilidade , Polímeros , Cloreto de Polivinila , Próteses e Implantes , Zidovudina/farmacologia
7.
J Virol Methods ; 70(1): 113-5, 1998 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-9506820

RESUMO

The disruption of the viral coat of human immunodeficiency virus by Triton X-100, a nonionic detergent, is a time-dependent process which requires incubation times of 30 min or longer. Conditions for the production of a noninfectious sample from a viral pellet that can be used to measure reverse transcriptase activity were determined.


Assuntos
Transcriptase Reversa do HIV/metabolismo , HIV-1/fisiologia , Virologia/métodos , Linhagem Celular , Glicerol , HIV-1/enzimologia , Humanos , Octoxinol , Segurança , Vírion/enzimologia , Vírion/fisiologia
8.
In Vivo ; 15(1): 1-9, 2001.
Artigo em Inglês | MEDLINE | ID: mdl-11286117

RESUMO

We evaluated the anti-HIV-1 activity of the T-cell-specific protein inhibitor PEG-asparaginase (PEG-ASNase) in human HIV-1-infected T-cells. We further examined the drug synergism between PEG-ASNase and the protease inhibitor Saquinavir (SAQ), both alone and in combination with nucleoside analog reverse transcriptase inhibitors (NRTI). Our drug synergism studies served as a model for an HIV-induced T-cell lymphoma. Phytohemagglutinin [PHA(+)] stimulated T-cells were infected with HIV-1 and then treated with one or more drugs 90 minutes from the viral exposure. To measure inhibition of viral replication, we examined HIV-1 RT and HIV-1 RNA in the supernatant and intracellularly on day 7 post-infection and drug treatment. Last, we examined the effect of administering drugs immediately after HIV-1 infection of T-cells to simulate treatment after an accidental exposure to the virus. PEG-ASNase, even when used alone, has anti-HIV-1 activity in PHA(+)-stimulated T-cells due to inhibition of protein synthesis. When the drug was used with SAQ, the combination was synergistic in inhibiting HIV-1 RT and RNA in the supernatant and intracellularly by 2.5 log10 in comparison with controls. PEG-ASNase and SAQ were even more effective in inhibiting HIV-1 replication when combined with the NRTI inhibitors azidothymidine (AZT) and (-)-beta-2',3'-dideoxy-3'-thiacytidine (3TC, lamivudine). The addition of ribonucleotide reductase inhibitor, 2-methyl-1H-isoindole-1,3-dione (MISID), further potentiated the antiviral effect of the regimen. HIV-1 RT and RNA analyses showed that the administration of the PEG-ASNase + SAQ drug combination immediately following exposure to HIV-1 completely inhibited the infection of T-cells in our in vitro T-cell model. From these results we conclude that PEG-ASNase is a valuable T-cell-specific protein inhibitor against HIV-1 infection, when used singly or in combination with a protease inhibitor, an RT inhibitor and an RR inhibitor. Since PEG-ASNase is a drug of choice for the treatment of T-cell lymphomas, a combination regimen containing PEG-ASNase could be very effective in the treatment of HIV-1-induced T-cell lymphoma and possibly AIDS. Future studies are needed in HIV-infected and/or HIV-induced T-cell lymphoma patients to investigate these findings.


Assuntos
Antineoplásicos/farmacologia , Asparaginase/farmacologia , Inibidores da Protease de HIV/farmacologia , Linfoma de Células T/virologia , Polietilenoglicóis/farmacologia , Saquinavir/farmacologia , Linfócitos T/virologia , Sinergismo Farmacológico , Inibidores Enzimáticos/farmacologia , Regulação Enzimológica da Expressão Gênica/efeitos dos fármacos , Regulação Viral da Expressão Gênica/efeitos dos fármacos , Transcriptase Reversa do HIV/genética , Transcriptase Reversa do HIV/metabolismo , Humanos , Indóis/farmacologia , Isoindóis , Inibidores da Transcriptase Reversa/farmacologia , Linfócitos T/citologia , Células Tumorais Cultivadas , Zidovudina/farmacologia
9.
J Med Chem ; 56(10): 3959-68, 2013 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-23659183

RESUMO

Human immunodeficiency virus type 1 reverse transcriptase (HIV-1 RT) is a major target for currently approved anti-HIV drugs. These drugs are divided into two classes: nucleoside and non-nucleoside reverse transcriptase inhibitors (NRTIs and NNRTIs). This study illustrates the synthesis and biochemical evaluation of a novel bifunctional RT inhibitor utilizing d4T (NRTI) and a TMC-derivative (a diarylpyrimidine NNRTI) linked via a poly(ethylene glycol) (PEG) linker. HIV-1 RT successfully incorporates the triphosphate of d4T-4PEG-TMC bifunctional inhibitor in a base-specific manner. Moreover, this inhibitor demonstrates low nanomolar potency that has 4.3-fold and 4300-fold enhancement of polymerization inhibition in vitro relative to the parent TMC-derivative and d4T, respectively. This study serves as a proof-of-concept for the development and optimization of bifunctional RT inhibitors as potent inhibitors of HIV-1 viral replication.


Assuntos
Fármacos Anti-HIV/síntese química , Fármacos Anti-HIV/farmacologia , Inibidores da Transcriptase Reversa/síntese química , Inibidores da Transcriptase Reversa/farmacologia , Primers do DNA , Fosfatos de Dinucleosídeos/química , Fosfatos de Dinucleosídeos/isolamento & purificação , Desenho de Fármacos , Transcriptase Reversa do HIV/química , Transcriptase Reversa do HIV/isolamento & purificação , Transcriptase Reversa do HIV/metabolismo , HIV-1/efeitos dos fármacos , Humanos , Indicadores e Reagentes , Espectrometria de Massas , Modelos Moleculares , Oligonucleotídeos/química , Oligonucleotídeos/isolamento & purificação , Polietilenoglicóis/farmacologia , Relação Estrutura-Atividade , Replicação Viral/efeitos dos fármacos , Difração de Raios X
10.
PLoS One ; 5(10): e13229, 2010 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-20949087

RESUMO

Recent work suggests a role for multiple host factors in facilitating HIV-1 reverse transcription. Previously, we identified a cellular activity which increases the efficiency of HIV-1 reverse transcription in vitro. Here, we describe aspects of the activity which shed light on its function. The cellular factor did not affect synthesis of strong-stop DNA but did improve downstream DNA synthesis. The stimulatory activity was isolated by gel filtration in a single fraction of the exclusion volume. Velocity-gradient purified HIV-1, which was free of detectable RNase activity, showed poor reverse transcription efficiency but was strongly stimulated by partially purified cell proteins. Hence, the cell factor(s) did not inactivate an RNase activity that might degrade the viral genomic RNA and block completion of reverse transcription. Instead, the cell factor(s) enhanced first strand transfer and synthesis of late reverse transcription suggesting it stabilized the reverse transcription complex. The factor did not affect lysis of HIV-1 by Triton X-100 in the endogenous reverse transcription (ERT) system, and ERT reactions with HIV-1 containing capsid mutations, which varied the biochemical stability of viral core structures and impeded reverse transcription in cells, showed no difference in the ability to be stimulated by the cell factor(s) suggesting a lack of involvement of the capsid in the in vitro assay. In addition, reverse transcription products were found to be resistant to exogenous DNase I activity when the active fraction was present in the ERT assay. These results indicate that the cell factor(s) may improve reverse transcription by facilitating DNA strand transfer and DNA synthesis. It also had a protective function for the reverse transcription products, but it is unclear if this is related to improved DNA synthesis.


Assuntos
HIV-1/genética , Transcrição Gênica , Capsídeo , Desoxirribonuclease I/metabolismo , Transcriptase Reversa do HIV/metabolismo , Humanos , Técnicas In Vitro , Células Jurkat , Mutação , Octoxinol , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Vírion
12.
J Mol Biol ; 385(3): 693-713, 2009 Jan 23.
Artigo em Inglês | MEDLINE | ID: mdl-19022262

RESUMO

The rapid replication of HIV-1 and the errors made during viral replication cause the virus to evolve rapidly in patients, making the problems of vaccine development and drug therapy particularly challenging. In the absence of an effective vaccine, drugs are the only useful treatment. Anti-HIV drugs work; so far drug therapy has saved more than three million years of life. Unfortunately, HIV-1 develops resistance to all of the available drugs. Although a number of useful anti-HIV drugs have been approved for use in patients, the problems associated with drug toxicity and the development of resistance means that the search for new drugs is an ongoing process. The three viral enzymes, reverse transcriptase (RT), integrase (IN), and protease (PR) are all good drug targets. Two distinct types of RT inhibitors, both of which block the polymerase activity of RT, have been approved to treat HIV-1 infections, nucleoside analogs (NRTIs) and nonnucleosides (NNRTIs), and there are promising leads for compounds that either block the RNase H activity or block the polymerase in other ways. A better understanding of the structure and function(s) of RT and of the mechanism(s) of inhibition can be used to generate better drugs; in particular, drugs that are effective against the current drug-resistant strains of HIV-1.


Assuntos
Biopolímeros/química , Transcriptase Reversa do HIV/química , Transcriptase Reversa do HIV/metabolismo , Inibidores da Transcriptase Reversa/farmacologia , Transcriptase Reversa do HIV/antagonistas & inibidores , HIV-1/fisiologia , Modelos Moleculares , Relação Estrutura-Atividade , Replicação Viral
13.
J Biol Chem ; 280(2): 1165-78, 2005 Jan 14.
Artigo em Inglês | MEDLINE | ID: mdl-15533946

RESUMO

Six oligonucleotides with carcinogen derivatives bound at the N2 atom of deoxyguanosine were prepared, including adducts derived from butadiene, acrolein, crotonaldehyde, and styrene, and examined for effects on the replicative enzymes bacteriophage DNA polymerase T7- (T7-) and HIV-1 reverse transcriptase for comparison with previous work on smaller DNA adducts. All of these adducts strongly blocked dCTP incorporation opposite the adducts. dATP was preferentially incorporated opposite the acrolein and crotonaldehyde adducts, and dTTP incorporation was preferred at the butadiene- and styrene-derived adducts. Steady-state kinetic analysis indicated that the reduced catalytic efficiency with adducted DNA involved both an increased Km and attenuated kcat. Fluorescence estimates of Kd and pre-steady-state kinetic measurements of koff showed no significantly decreased affinity of T7- with the adducted oligonucleotides or the dNTP. Pre-steady-state kinetics showed no burst phase kinetics for dNTP incorporation with any of the modified oligonucleotides. These results indicate that phosphodiester bond formation or a conformational change of the enzyme.DNA complex is rate-limiting instead of the step involving release of the oligonucleotide. Thio elemental effects for dNTP incorporation were generally relatively small but variable, indicating that the presence of adducts may sometimes make phosphodiester bond formation rate-limiting but not always.


Assuntos
Bacteriófago T7/enzimologia , Adutos de DNA/química , Adutos de DNA/metabolismo , DNA Polimerase Dirigida por DNA/metabolismo , Guanina/metabolismo , Transcriptase Reversa do HIV/metabolismo , Nucleotídeos/metabolismo , Sequência de Bases , Biopolímeros/química , Biopolímeros/metabolismo , Guanina/química , HIV-1/enzimologia , Cinética , Nucleotídeos/química , Fosfatos/metabolismo , Estireno/metabolismo , Moldes Genéticos , Termodinâmica
14.
Eur J Biochem ; 267(9): 2658-65, 2000 May.
Artigo em Inglês | MEDLINE | ID: mdl-10785387

RESUMO

Substitution of particular residues postulated to have a role in active site architecture can alter the overall fidelity of DNA polymerization by HIV-1. The effects of this kind of substitution were determined in a lacZ-based assay using HIV-1 reverse transcriptase with specifically mutated residues. We found that the reported higher fidelity of nucleotide incorporation by the Met184-->Val and Glu89-->Gly mutant reverse transcriptases (RTs) was not reflected in a substantial increase in the overall fidelity for these RT mutants. For the 3TC-resistant Met184-->Val RT mutant an almost wild-type level of overall mutation frequency was observed, while the foscarnet-resistant RTs harbouring the Glu89-->Gly mutation showed only a twofold decrease in mutation frequency. The Tyr183-->Phe mutant RT displayed a slightly lower fidelity than wild-type RT. Conversely, the ddI-resistant RT mutant containing the Leu74-->Val mutation showed a 3.5-fold higher fidelity compared to the wild-type enzyme. Finally, the Tyr115-->Ala substitution rendered the enzyme substantially more error-prone for DNA polymerization. These results correlate with three-dimensional structural studies of the polymerase active site and confirm the postulated impact of the Leu74, Tyr183 and Tyr115 RT residues on the overall fidelity of DNA polymerization by HIV-1 RT.


Assuntos
Aminoácidos/química , Transcriptase Reversa do HIV/metabolismo , Substituição de Aminoácidos , Aminoácidos/genética , Sequência de Bases , Biopolímeros , Transcriptase Reversa do HIV/química , Transcriptase Reversa do HIV/genética , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Homologia de Sequência do Ácido Nucleico
15.
J Biol Chem ; 279(52): 54529-32, 2004 Dec 24.
Artigo em Inglês | MEDLINE | ID: mdl-15385563

RESUMO

Using the force sensor of an atomic force microscope, motor forces of the human immunodeficiency virus-1 reverse transcriptase were measured during active replication of a short DNA transcript. At low load forces the polymerase is mechanically slowed, whereas at high force (approximately 15 piconewton) it stalls. From recordings of estimated polymerase turnover velocity versus load force, an approximate force-velocity curve has been constructed. The shape of the curve suggests that load force strongly inhibits the rate-limiting step of the polymerase turnover cycle and that the combined effect of load on all steps involves an effective motion of about 1.6 nm. Earlier results from pre-steady-state kinetics experiments have identified the rate-limiting step as the closing of the fingers domain to form a tight catalytic complex. Together these findings indicate that the closing of the fingers domain is a major force-generating step for human immunodeficiency virus reverse transcriptase and, by extension, for all DNA polymerase machines.


Assuntos
Transcriptase Reversa do HIV/química , Transcriptase Reversa do HIV/metabolismo , Sítios de Ligação , Biotinilação , Catálise , Fenômenos Químicos , Físico-Química , DNA/química , DNA/metabolismo , Cinética , Modelos Moleculares , Polímeros/metabolismo , Conformação Proteica , Relação Estrutura-Atividade , Moldes Genéticos
16.
Virology ; 290(2): 300-8, 2001 Nov 25.
Artigo em Inglês | MEDLINE | ID: mdl-11883194

RESUMO

The biological form of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) is a heterodimer consisting of two polypeptides, p66 and p51, which have identical N-termini. The p51 polypeptide is generated by action of viral protease cleaving the p66 polypeptide between residues Phe440 and Tyr441. Dimerization has been mostly studied using bacterially purified RT bearing amino acid changes in either subunit, but not in the context of HIV-1 particles. We introduced changes of conserved amino acid residues 430-438 into the protease-sensitive subdomain of the p66 subunit and analyzed the reverse transcriptase processing and function using purified variants and their corresponding HIV-1 recombinant clones. Our mutational analysis shows that the conserved Glu438 residue is critical for proper heterodimerization and function of virion-associated RT, but not of bacterially expressed RT. In contrast, the conserved Glu430, Glu432, and Pro433 residues are not important for dimerization of virion-associated RT. The network of interactions made by the Glu438 carboxyl group with neighboring residues is critical to protect the Phe440-Tyr441 from cleavage in the context of the p66/p51 heterodimer and may explain why the p66/p51 is not processed further to p51/p51.


Assuntos
Ácido Glutâmico/metabolismo , Protease de HIV/metabolismo , Transcriptase Reversa do HIV/metabolismo , HIV-1/enzimologia , Processamento de Proteína Pós-Traducional , Sequência de Aminoácidos , Clonagem Molecular , Dimerização , Escherichia coli , Expressão Gênica , Ácido Glutâmico/genética , Transcriptase Reversa do HIV/genética , HIV-1/fisiologia , Cinética , Dados de Sequência Molecular , Mutagênese , Peptídeos/genética , Polímeros , Estrutura Terciária de Proteína , Vírion/fisiologia , Replicação Viral
17.
J Biol Chem ; 279(37): 38424-32, 2004 Sep 10.
Artigo em Inglês | MEDLINE | ID: mdl-15231830

RESUMO

2-Naphthalenesulfonic acid (4-hydroxy-7-[[[[5-hydroxy-6-[(4 cinnamylphenyl)azo]-7-sulfo-2-naphthalenyl]amino]-carbonyl]amino]-3-[(4-cinnamylphenyl)]azo (KM-1)) is a novel non-nucleoside reverse transcriptase inhibitor (NNRTI) that was designed to bind at an unconventional site on human immunodeficiency virus type 1 reverse transcriptase (RT) (Skillman, A. G., Maurer, K. W., Roe, D. C., Stauber, M. J., Eargle, D., Ewing, T. J., Muscate, A., Davioud-Charvet, E., Medaglia, M. V., Fisher, R. J., Arnold, E., Gao, H. Q., Buckheit, R., Boyer, P. L., Hughes, S. H., Kuntz, I. D., and Kenyon, G. L. (2002) Bioorg. Chem. 30, 443-458). We have investigated the mechanism by which KM-1 inhibits wild-type human immunodeficiency virus type 1 RT by using pre-steady state kinetic methods to examine the effect of KM-1 on the parameters governing the single nucleotide incorporation catalyzed by RT. Analysis of the pre-steady-state burst phase of dATP incorporation showed that KM-1 decreased the amplitude of the reaction as previously shown for other NNRTIs, because of the slow equilibration of the inhibitor with RT. In the ternary enzyme-DNA-KM-1 complex (E-DNA-I), incorporation of the next nucleotide onto the primer is blocked. However, unlike conventional NNRTIs, the inhibitory effect was caused primarily by weakening the DNA binding affinity and displacing DNA from the enzyme. Wild-type RT binds a 25/45-mer DNA duplex with an apparent K(d) of 3 nm, which was increased to 400 nm upon saturation with KM-1. Likewise, the apparent K(d) for KM-1 binding to RT increased at higher DNA concentrations. We therefore conclude that KM-1 represents a new class of inhibitor distinct from nevirapine and related NNRTIs. KM-1 can bind to RT in both the absence and presence of DNA but weakens the affinity for DNA 140-fold so that it favors DNA dissociation. The data suggest that KM-1 distorts RT conformation and misaligns DNA at the active site.


Assuntos
Cinamatos/química , Cinamatos/farmacologia , Transcriptase Reversa do HIV/antagonistas & inibidores , Transcriptase Reversa do HIV/metabolismo , Naftalenossulfonatos/química , Naftalenossulfonatos/farmacologia , Inibidores da Transcriptase Reversa/farmacologia , Trifosfato de Adenosina/química , Sítios de Ligação , Catálise , Linhagem Celular Transformada , DNA/química , DNA/metabolismo , Detergentes/farmacologia , Relação Dose-Resposta a Droga , Cinética , Luz , Microscopia Eletrônica , Modelos Químicos , Octoxinol/farmacologia , Oligonucleotídeos/química , Ligação Proteica , Conformação Proteica , Espalhamento de Radiação , Fatores de Tempo
18.
FASEB J ; 15(11): 1902-8, 2001 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11532970

RESUMO

Inhibition of HIV-1 reverse transcriptase (RT) and HIV protease are effective mechanisms for anti-retroviral agents, and the combined use of mechanistically different medications has markedly improved the treatment of HIV infected patients. The active metabolite of mercaptopurine and thioguanine (TG), deoxythioguanosine triphosphate, was shown to be incorporated into DNA by the polymerase function of HIV-1 RT and then to abrogate RNA cleavage by HIV-1 RNaseH. Treatment of human lymphocyte cultures with thioguanine produced substantial inhibition of HIV replication (IC(50)=0.035 microM, IC(95)=15.4 microM), with minimal toxicity to host lymphocytes (<10% at 15.4 microM TG, P<0.000005). Furthermore, low concentrations of TG and zidovudine were synergistic in inhibiting HIV replication in human lymphocytes (synergy volume=19 microM(2)%), without additive cytotoxicity to host lymphocytes. Thus, thiopurines are novel anti-retroviral agents that alter the DNA-RNA substrates for HIV RNaseH, thereby abrogating early stages of HIV replication.


Assuntos
Fármacos Anti-HIV/farmacologia , Nucleotídeos de Desoxiguanina/metabolismo , Transcriptase Reversa do HIV/metabolismo , HIV-1/efeitos dos fármacos , Mercaptopurina/farmacologia , Inibidores da Síntese de Ácido Nucleico/farmacologia , Tioguanina/farmacologia , Tionucleotídeos/metabolismo , Replicação Viral/efeitos dos fármacos , Sequência de Bases , Células Cultivadas , DNA/metabolismo , HIV-1/metabolismo , HIV-1/fisiologia , Células HeLa , Humanos , Dados de Sequência Molecular , Ácidos Nucleicos Heteroduplexes , Polímeros , RNA/metabolismo , Ribonuclease H/metabolismo
19.
Pharm Res ; 18(8): 1096-101, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11587479

RESUMO

PURPOSE: To investigate the potential use of polymeric nanoparticles for the delivery of antisense oligonucleotides in HIV-1-infected cell cultures. METHODS: Phosphorothioate oligonucleotides were encapsulated into poly (D,L-lactic acid) nanoparticles. Two models of infected cells were used to test the ability of nanoparticles to deliver them. HeLa P4-2 CD4+ cells, stably transfected with the beta-galactosidase reporter gene, were first used to evaluate the activity of the oligonucleotides on a single-round infection cycle. The acutely infected lymphoid CEM cells were then used to evaluate the inhibition of the viral production of HIV-1 by the oligonucleotides. RESULTS: The addition to infected CEM cells of nanoparticles containing gag antisense oligonucleotides in the nanomolar range led to strong inhibition of the viral production in a concentration-dependent manner. Similar results were previously observed in HeLa P4-2 CD4+ cells. Nanoparticle-entrapped random-order gag oligonucleotides had similar effects on reverse transcription. However, the reverse transcriptase activity of infected cells treated with nanomolar concentrations of free antisense and random oligonucleotides was not affected. CONCLUSIONS: These results suggest that poly (D,L-lactic acid) nanoparticles may have great potential as an efficient delivery system for oligonucleotides in HIV natural target cells, i.e., lymphocytic cells.


Assuntos
HIV-1/efeitos dos fármacos , Oligonucleotídeos/administração & dosagem , Oligonucleotídeos/farmacologia , Inibidores da Transcriptase Reversa/administração & dosagem , Inibidores da Transcriptase Reversa/farmacologia , Sobrevivência Celular/efeitos dos fármacos , Células Cultivadas , Composição de Medicamentos , Excipientes , Transcriptase Reversa do HIV/antagonistas & inibidores , Transcriptase Reversa do HIV/metabolismo , Células HeLa , Humanos , Indicadores e Reagentes , Ácido Láctico , Linfócitos/efeitos dos fármacos , Linfócitos/virologia , Microesferas , Oligonucleotídeos Antissenso/administração & dosagem , Oligonucleotídeos Antissenso/farmacologia , Poliésteres , Polímeros , Transfecção , Replicação Viral/efeitos dos fármacos
20.
Mol Pharmacol ; 58(5): 1100-8, 2000 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11040059

RESUMO

Polyanionic dendrimers were synthesized and evaluated for their antiviral effects. Phenyldicarboxylic acid (BRI6195) and naphthyldisulfonic acid (BRI2923) dendrimers were found to inhibit the replication of human immunodeficiency virus type 1 (HIV-1; strain III(B)) in MT-4 cells at a EC(50) of 0.1 and 0.3 microg/ml, respectively. The dendrimers were not toxic to MT-4 cells up to the highest concentrations tested (250 microg/ml). These compounds were also effective against various other HIV-1 strains, including clinical isolates, HIV-2 strains, simian immunodeficiency virus (SIV, strain MAC(251)), and HIV-1 strains that were resistant to reverse transcriptase inhibitors. HIV strains containing mutations in the envelope glycoprotein gp120 (engendering resistance to known adsorption inhibitors) displayed reduced sensitivity to the dendrimers. The compounds inhibited the binding of wild-type virus and recombinant virus (containing wild-type gp120) to MT-4 cells at concentrations comparable to those that inhibited the replication of HIV-1(III(B)) in these cells. Cellular uptake studies indicated that BRI2923, but not BRI6195, permeates into MT-4 and CEM cells. Accordingly, the naphtyldisulfonic acid dendrimer (BRI2923) proved able to inhibit later steps of the replication cycle of HIV, i.e., reverse transcriptase and integrase. NL4.3 strains resistant to BRI2923 were selected after passage of the virus in the presence of increasing concentrations of BRI2923. The virus mutants showed 15-fold reduced sensitivity to BRI2923 and cross-resistance to known adsorption inhibitors. However, these virus mutants were not cross-resistant to reverse transcriptase inhibitors or protease inhibitors. We identified several mutations in the envelope glycoprotein gp120 gene (i.e., V2, V3, and C3, V4, and C4 regions) of the BRI2923-resistant NL4.3 strains that were not present in the wild-type NL4.3 strain, whereas no mutations were found in the reverse transcriptase or integrase genes.


Assuntos
Fármacos Anti-HIV/farmacologia , HIV-1/efeitos dos fármacos , Polímeros/farmacologia , Sulfonas/farmacologia , Replicação Viral/efeitos dos fármacos , Animais , Fármacos Anti-HIV/farmacocinética , Ácidos Carboxílicos/farmacocinética , Ácidos Carboxílicos/farmacologia , Células Cultivadas , Dendrímeros , Proteína gp120 do Envelope de HIV/metabolismo , Integrase de HIV/efeitos dos fármacos , Integrase de HIV/metabolismo , Transcriptase Reversa do HIV/efeitos dos fármacos , Transcriptase Reversa do HIV/metabolismo , HIV-1/classificação , HIV-1/fisiologia , HIV-2/efeitos dos fármacos , HIV-2/fisiologia , Microscopia Confocal , Mutação , Naftalenos/farmacocinética , Naftalenos/farmacologia , Polímeros/farmacocinética , Coelhos , Sulfonas/farmacocinética , Ácidos Sulfônicos , Tioureia/análogos & derivados , Tioureia/farmacocinética , Tioureia/farmacologia , Fatores de Tempo
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