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1.
Phys Rev E Stat Nonlin Soft Matter Phys ; 79(2 Pt 1): 021116, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19391715

ABSTRACT

The Ginzburg-Landau model with two-order parameters appears in many condensed-matter problems. However, even for scalar order parameters, the most general U(1)-symmetric Landau potential with all quadratic and quartic terms contains 13 independent coefficients and cannot be minimized with straightforward algebra. Here, we develop a geometric approach that circumvents this computational difficulty and allows one to study properties of the model without knowing the exact position of the minimum. In particular, we find the number of minima of the potential, classify explicit symmetries possible in this model, establish conditions when and how these symmetries are spontaneously broken, and explicitly describe the phase diagram.

3.
Nucleic Acids Res ; 28(17): 3185-96, 2000 Sep 01.
Article in English | MEDLINE | ID: mdl-10954585

ABSTRACT

The efficiency of programmed ribosomal frameshifting in decoding antizyme mRNA is the sensor for an autoregulatory circuit that controls cellular polyamine levels in organisms ranging from the yeast Schizosaccharomyces pombe to Drosophila to mammals. Comparison of the frameshift sites and flanking stimulatory signals in many organisms now permits a reconstruction of the likely evolutionary path of the remarkably conserved mRNA sequences involved in the frameshifting.


Subject(s)
Codon/genetics , Conserved Sequence/genetics , Evolution, Molecular , Frameshifting, Ribosomal/genetics , Polyamines/metabolism , RNA, Catalytic/genetics , Animals , Base Sequence , Feedback , Humans , Molecular Sequence Data , Nucleic Acid Conformation , Phylogeny , RNA, Catalytic/chemistry , RNA, Catalytic/metabolism , RNA, Messenger/chemistry , RNA, Messenger/genetics , RNA, Messenger/metabolism , Regulatory Sequences, Nucleic Acid/genetics , Sequence Alignment
4.
Appl Biochem Biotechnol ; 87(2): 141-51, 2000 May.
Article in English | MEDLINE | ID: mdl-10949695

ABSTRACT

A method for individual and simultaneous covalent immobilization of cholesterol oxidase and peroxidase to copolymer of acrylonitrile with acrylamide is described. The effect of immobilization on the catalytic properties of the covalently bound enzymes was studied. The immobilized enzymes showed no change in pH optima and an increase in temperature optima, activation energy, and Km' compared to data received from experiments with soluble enzymes. A small glass column packed with immobilized multienzyme complex was used to develop a method for manual determination of cholesterol in foodstuffs (e.g., in mayonnaise "Olinease"). The method was characterized by high analytical precision (coefficient of variation = 2.67%). The results show high correlation with those obtained by the Kageyama method (r = 0.986). The method is economical (the enzyme-carrier conjugate may be used more than 300 times), precise, easy to perform, and less time-consuming than the manual methods utilizing soluble enzymes. The established manual method can be proposed for cholesterol determination in foodstuffs.


Subject(s)
Cholesterol Oxidase/chemistry , Peroxidase/chemistry , Acrylamide/chemistry , Acrylonitrile/chemistry , Aspergillus niger/enzymology , Catalysis , Cholesterol/analysis , Detergents/pharmacology , Food Analysis , Hydrogen-Ion Concentration , Kinetics , Membranes, Artificial , Models, Chemical , Nocardia/enzymology , Octoxynol/pharmacology , Polymers , Temperature
5.
EMBO J ; 19(8): 1907-17, 2000 Apr 17.
Article in English | MEDLINE | ID: mdl-10775274

ABSTRACT

Regulation of ornithine decarboxylase in vertebrates involves a negative feedback mechanism requiring the protein antizyme. Here we show that a similar mechanism exists in the fission yeast Schizosaccharomyces pombe. The expression of mammalian antizyme genes requires a specific +1 translational frameshift. The efficiency of the frameshift event reflects cellular polyamine levels creating the autoregulatory feedback loop. As shown here, the yeast antizyme gene and several newly identified antizyme genes from different nematodes also require a ribosomal frameshift event for their expression. Twelve nucleotides around the frameshift site are identical between S.pombe and the mammalian counterparts. The core element for this frameshifting is likely to have been present in the last common ancestor of yeast, nematodes and mammals.


Subject(s)
Frameshift Mutation , Polyamines/metabolism , Proteins/chemistry , Schizosaccharomyces/chemistry , Amino Acid Sequence , Animals , Caenorhabditis elegans/genetics , Conserved Sequence , Evolution, Molecular , Gene Deletion , Humans , Molecular Sequence Data , Mutagenesis , Protein Biosynthesis , Proteins/genetics , Putrescine/metabolism , Sequence Homology, Amino Acid , Spermidine/metabolism , Spermine/metabolism , Transcription, Genetic
6.
Proc Natl Acad Sci U S A ; 97(9): 4808-13, 2000 Apr 25.
Article in English | MEDLINE | ID: mdl-10781085

ABSTRACT

Previous studies with mice overproducing ornithine decarboxylase have demonstrated the importance of polyamine homeostasis for normal mammalian spermatogenesis. The present study introduces a likely key player in the maintenance of proper polyamine homeostasis during spermatogenesis. Antizyme 3 is a paralog of mammalian ornithine decarboxylase antizymes. Like its previously described counterparts, antizymes 1 and 2, it inhibits ornithine decarboxylase, which catalyzes the synthesis of putrescine. Earlier work has shown that the coding sequences for antizymes 1 and 2 are in two different, partially overlapping reading frames. Ribosomes translate the first reading frame, and just before the stop codon for that frame, they shift to the second reading frame to synthesize a trans-frame product. The efficiency of this frameshifting depends on polyamine concentration, creating an autoregulatory circuit. Antizyme 3 cDNA has the same arrangement of reading frames and a potential shift site with definite, although limited, homology to its evolutionarily distant antizyme 1 and 2 counterparts. In contrast to antizymes 1 and 2, which are widely expressed throughout the body, antizyme 3 transcription is restricted to testis germ cells. Expression starts early in spermiogenesis and finishes in the late spermatid phase. The potential significance of antizyme 3 expression during spermatogenesis is discussed in this paper.


Subject(s)
Enzyme Inhibitors/pharmacology , Ornithine Decarboxylase Inhibitors , Proteins/genetics , Proteins/pharmacology , Spermatogenesis/physiology , Adult , Amino Acid Sequence , Animals , Chickens , Drosophila melanogaster , Humans , In Situ Hybridization , Male , Mice , Molecular Sequence Data , Open Reading Frames , Phylogeny , Proteins/chemistry , Seminiferous Tubules/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Sertoli Cells/metabolism , Testis/metabolism , Xenopus laevis
8.
Genomics ; 52(2): 119-29, 1998 Sep 01.
Article in English | MEDLINE | ID: mdl-9782076

ABSTRACT

A second mammalian ornithine decarboxylase antizyme was discovered. The deduced protein sequence of the human antizyme2 is 54% identical and 67% similar to human antizyme1 but 99.5% identical to mouse antizyme2. Polyamine-regulated programmed ribosomal frameshifting is used in decoding antizyme2 mRNA as it is for antizyme1 mRNA. The mRNA signals for the programmed frameshifting are similar in the mRNAs for the two antizymes. However, in the stimulatory pseudoknot 3' of the shift site, while the sequences of the stems are highly conserved, the sequences of the loops are divergent. Functional distinctions between antizymes seem likely, but no distinction in the tissue distribution of human antizyme1 and 2 mRNAs was distinguished, though antizyme2 mRNA is 16-fold less abundant than its antizyme1 counterpart. In addition to the previously characterized human antizyme1 mRNA, a second antizyme1 mRNA with an additional 160 nucleotides at its 3' end was identified, and it has a tissue distribution different from that of the shorter antizyme1 mRNA.


Subject(s)
Isoenzymes/genetics , Proteins/genetics , Amino Acid Sequence , Base Sequence , Cell-Free System/chemistry , Cell-Free System/enzymology , Conserved Sequence , DNA, Complementary/chemistry , DNA, Complementary/genetics , Frameshifting, Ribosomal , Gene Expression , Humans , Molecular Sequence Data , Nucleic Acid Conformation , Protein Biosynthesis , RNA, Messenger/chemistry , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reading Frames/genetics , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Sequence Homology, Nucleic Acid , Tissue Distribution , Transcription, Genetic
9.
J Biol Chem ; 273(41): 26295-7, 1998 Oct 09.
Article in English | MEDLINE | ID: mdl-9756857

ABSTRACT

beta-Aspartyl di- and tripeptides are common constituents of mammalian metabolism, but their formation and catabolism are not fully understood. In this study we provide evidence that glycosylasparaginase (aspartylglucosaminidase), an N-terminal nucleophile hydrolase involved in the hydrolysis of the N-glycosidic bond in glycoproteins, catalyzes the hydrolysis of beta-aspartyl peptides to form L-aspartic acid and amino acids or peptides. The enzyme also effectively catalyzes the synthesis of beta-aspartyl peptides by transferring the beta-aspartyl moiety from other beta-aspartyl peptides or beta-aspartylglycosylamine to a variety of amino acids and peptides. Furthermore, the enzyme can use L-asparagine as the beta-aspartyl donor in the formation of beta-aspartyl peptides. The data show that synthesis and degradation of beta-aspartyl peptides are new, significant functions of glycosylasparaginase and suggest that the enzyme could have an important role in the metabolism of beta-aspartyl peptides.


Subject(s)
Aspartic Acid/chemistry , Aspartylglucosylaminase/metabolism , Oligopeptides/biosynthesis , Catalysis , Hydrolysis , Oligopeptides/chemistry , Oligopeptides/metabolism
10.
RNA ; 4(10): 1230-8, 1998 Oct.
Article in English | MEDLINE | ID: mdl-9769097

ABSTRACT

The coding sequence for mammalian ornithine decarboxylase antizyme is in two different partially overlapping reading frames with no independent ribosome entry to the second ORF. Immediately before the stop codon of the first ORF, a proportion of ribosomes undergo a quadruplet translocation event to shift to the +1 reading frame of the second and main ORF. The proportion that frameshifts is dependent on the polyamine level and, because the product antizyme is a negative regulator of intracellular polyamine levels, the frameshifting acts to complete an autoregulatory circuit by sensing polyamine levels. An mRNA element just 5' of the shift site and a 3' pseudoknot are important for efficient frameshifting. Previous work has shown that a cassette with the mammalian shift site and associated signals directs efficient shifting in the budding yeast Saccharomyces cerevisiae at the same codon to the correct frame, but that the shift is -2 instead of +1. The product contains an extra amino acid corresponding to the shift site. The present work shows efficient frameshifting also occurs in the fission yeast, Schizosaccharomyces pombe. This frameshifting is 80% +1 and 20% -2. The response of S. pombe translation apparatus to the mammalian antizyme recoding signals is more similar to that of the mammalian system than to that of S. cerevisiae. S. pombe provides a good model system for genetic studies on the mechanism of at least this type of programmed mammalian frameshifting.


Subject(s)
Frameshifting, Ribosomal/genetics , Proteins/genetics , Saccharomyces cerevisiae/genetics , Schizosaccharomyces/genetics , Amino Acid Sequence , Animals , Base Sequence , Cell-Free System , Enzyme Inhibitors , Molecular Sequence Data , Nucleic Acid Conformation , Ornithine Decarboxylase Inhibitors , RNA, Messenger/chemistry , RNA, Messenger/genetics , Rats , Regulatory Sequences, Nucleic Acid/genetics , Sequence Analysis
11.
Mol Cell Biol ; 18(3): 1553-61, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9488472

ABSTRACT

Previously, a Drosophila melanogaster sequence with high homology to the sequence for mammalian antizyme (ornithine decarboxylase antizyme) was reported. The present study shows that homology of this coding sequence to its mammalian antizyme counterpart also extends to a 5' open reading frame (ORF) which encodes the amino-terminal part of antizyme and overlaps the +1 frame (ORF2) that encodes the carboxy-terminal three-quarters of the protein. Ribosomes shift frame from the 5' ORF to ORF2 with an efficiency regulated by polyamines. At least in mammals, this is part of an autoregulatory circuit. The shift site and 23 of 25 of the flanking nucleotides which are likely important for efficient frameshifting are identical to their mammalian homologs. In the reverse orientation, within one of the introns of the Drosophila antizyme gene, the gene for snRNP Sm D3 is located. Previously, it was shown that two closely linked P-element transposon insertions caused the gutfeeling phenotype of embryonic lethality and aberrant neuronal and muscle cell differentiation. The present work shows that defects in either snRNP Sm D3 or antizyme, or both, are likely causes of the phenotype.


Subject(s)
Drosophila melanogaster/genetics , Frameshifting, Ribosomal , Introns , Proteins/genetics , Ribonucleoproteins, Small Nuclear/genetics , Amino Acid Sequence , Animals , Base Sequence , Chromosome Mapping , DNA, Complementary , DNA, Single-Stranded , Gene Expression , Genes, Insect , Humans , Molecular Sequence Data , Open Reading Frames , Protein Biosynthesis , RNA, Messenger , Sequence Homology, Amino Acid
12.
Arch Biochem Biophys ; 294(2): 703-6, 1992 May 01.
Article in English | MEDLINE | ID: mdl-1567226

ABSTRACT

A new substrate for subtilisins, anthraniloyl-Ala-Ala-Phe-4-nitroanilide, has been synthesized and characterized. The peptide is a fluorogenic substrate that is intramolecularly quenched without loss of its chromogenic properties and offers a possibility for double-assay kinetic analysis. The kinetic parameters determined for subtilisin Carlsberg are Km = 0.004 mM, kcat = 104 s-1, and those for subtilisin BPN' are Km = 0.020 mM, kcat = 49 s-1. The substrate is extremely sensitive for subtilisins; the specificity constants are 10-fold higher than the corresponding values for the widely used substrate, succinyl-Ala-Ala-Pro-Phe-4-nitroanilide, and 200- to 1000-fold higher than the values obtained with succinyl-Ala-Ala-Phe-4-nitroanilide. The favorable effect of the anthraniloyl group as a P4 residue in the substrate sequence Ala-Ala-Phe-4-nitroanilide was assumed to be due to an ability to stiffen S4-P4 interactions. The mechanism proposed is hydrogen bond formation between the phenol group of tyrosine-104 and the amino group of the anthraniloyl moiety. In the spectrophotometric assay with the new substrate, the lower detection limit for subtilisin Carlsberg was 1 nM.


Subject(s)
Oligopeptides/metabolism , Subtilisins/metabolism , Amino Acid Sequence , Animals , Cattle , Chymotrypsin/metabolism , Indicators and Reagents , Kinetics , Magnetic Resonance Spectroscopy , Molecular Sequence Data , Oligopeptides/chemistry , Substrate Specificity
13.
Lab Delo ; (10): 28-30, 1991.
Article in Russian | MEDLINE | ID: mdl-1722525

ABSTRACT

A method for manual measurement of glucose in biologic fluids has been developed, making use of glucose oxidase immobilized on a carbamide derivative of microcrystal cellulose; two variants are suggested: a rapid and a routine one. The method is characterized by a high analytical reliability, its results are in high correlation with the results of measurements by Beckman glucose analyzer (r = 0.92, p less than 0.001). The method is economic (glucose oxidase reagent may be used for more than 300 times), easily available, and is 3 to 6 times more rapid than the method with soluble glucose oxidase. It is particularly convenient for urgent laboratory diagnosis.


Subject(s)
Blood Glucose/analysis , Enzymes, Immobilized , Glucose Oxidase
14.
Lab Delo ; (1): 29-31, 1990.
Article in Russian | MEDLINE | ID: mdl-1691334

ABSTRACT

An available method was developed for manual measurements of urea in biological fluids with the use of urease immobilized in sepharose gel. The suggested technique is more reagent-saving (the same reagent may be used for up to 500 times), 3-6-fold more rapid, and twice more sensitive than the routine phenolhypochlorite method with soluble urease. The method is characterized by a high analytical reliability, its results are in high correlation with the soluble urease procedure and with the diacetylmonoxime method (r = 07988 and 0.995, respectively). It is particularly fit for rapid analysis of the urea and convenient for small laboratories.


Subject(s)
Enzymes, Immobilized , Urea/blood , Urease , Humans , Hydrolysis , Indicators and Reagents , Kidney Diseases/diagnosis , Phenol , Phenols , Reproducibility of Results , Sepharose
19.
Akush Ginekol (Sofiia) ; 28(5): 10-4, 1989.
Article in Bulgarian | MEDLINE | ID: mdl-2627028

ABSTRACT

A radionuclide method with quickly disintegrating 99MTC labelled human albumin and DTPA in a volume of 0.3-0.5 ml and activity of 37 mVk with two consecutive examinations of central and renal hemodynamics was used in 91 pregnant women with preeclampsia and pyelonephritis. Marked hypovolemia was found in all groups of investigated women with preeclampsia with the exception of the group of women with pyelonephritis. There was also difference in arterial pressure in women with preeclampsia I degree and pyelonephritis, which was statistically significant with advancement of gravity and duration of the disease. The investigation of the functional state of kidneys and blood flow showed a tendency to slowing both in the arterial and venous circulation in women with pre-eclampsia of pregnancy. In the pregnant women of this group and the women with pyelonephritis there was asymmetry in the curves of the blood flow as well as in the temporary indices of renal filtration, which were increases two-folds in comparison with the normal values. They were mostly manifested on the side of the involvement in women with pyelonephritis. Irradiation loading was 0.212 mZv of both examinations and was ten times less than that of x-ray pelvimetry.


Subject(s)
Hemodynamics/physiology , Kidney/physiopathology , Pre-Eclampsia/physiopathology , Adolescent , Adult , Female , Humans , Hypertension/complications , Hypertension/diagnostic imaging , Hypertension/physiopathology , Pentetic Acid , Pre-Eclampsia/diagnostic imaging , Pre-Eclampsia/etiology , Pregnancy , Pyelonephritis/complications , Pyelonephritis/diagnostic imaging , Pyelonephritis/physiopathology , Radioisotope Renography/methods , Technetium , Technetium Tc 99m Aggregated Albumin
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