Xylanase from Aspergillus tamarii shows different kinetic parameters and substrate specificity in the presence of ferulic acid.

A 22 kDa xylanase (AtXyl1) from Aspergillus tamarii was purified by two chromatographic steps and presented preference for oat spelt (OSX), birchwood (BrX) and beechwood (BeX) xylans respectively, as substrates. AtXyl1 displays the highest activity at pH 5.5 and 55 °C and showed tolerance over a range of different phenolic compounds. The activity of AtXyl1 was not inhibited when the enzyme was incubated with ferulic acid (FA) using OSX or BrX as substrate. On the other hand, the incubation of AtXyl1 with BeX and FA resulted in an increase in enzyme activity. The molecular docking of a GH11 xylanase from Aspergillus niger with FA showed the preference for binding within the catalytic site. The position of FA was based on the presence or absence of a complexed substrate. When the enzyme from A. niger was docked in the absence of xylan in its crystal structure, FA interacted with Tyr164 and a water molecule. For the enzyme socked with xylo-oligosaccharides, FA interacted with Ser94, Tyr89 and the xylo-oligosaccharide present in the catalytic site. Thermodynamic parameters from the reaction of AtXyl1 with different xylans and FA indicate that FA can cause a conformational change in the enzyme, and this can influence the substrate fitting and makes the enzyme tolerant or active toward the substrate. Our findings suggest that enzyme activation or tolerance to phenolic compounds can be correlated to subtle changes in enzyme conformation due to the presence of the phenolic compound.

Optimization of Xylanase Production from Aspergillus foetidus in Soybean Residue.

Enzymatic hydrolysis is an important but expensive step in the process to obtain enzyme derived products. Thus, the production of efficient enzymes is of great interest for this biotechnological application. The production of xylanase by Aspergillus foetidus in soybean residues was optimized using 2 × 23 factorial designs. The experimental data was fitted into a polynomial model for xylanase activity. Statistical analyses of the results showed that variables pH and the interaction of pH and temperature had influenced the production of xylanase, with the best xylanase production level (13.98 U/mL) occurring at fermentation for 168 hours, pH 7.0, 28°C, and 120 rpm.

Production, purification and characterization of an aspartic protease from Aspergillus foetidus.

An acidic thermostable protease was extracellularly produced either in shake flask or in stirred tank bioreactor by an Aspergillus foetidus strain isolated from the Brazilian savanna soil using different nitrogen sources. Its maximum activity (63.7 U mL-1) was obtained in a medium containing 2% (w/v) peptone. A cultivation carried out in a 5.0 L stirred-tank bioreactor provided a maximum protease activity 9% lower than that observed in Erlenmeyer flasks, which was obtained after a significantly shorter (by 16-29%) time. Protease purification by a combination of gel-filtration chromatography resulted in a 16.9-fold increase in specific activity (248.1 U g-1). The estimated molecular weight of the purified enzyme was 50.6 kDa, and the optimal pH and temperature were 5.0 and 55 °C, respectively. The enzyme was completely inhibited by pepstatin A, and its activity enhanced by some metals. According to the inhibition profiles, it was confirmed that the purified acid protease belongs to the aspartic protease type. These results are quite promising for future development of large-scale production of such protease, which can be useful in biotechnological applications requiring high enzyme activity and stability under acidic conditions.

Xylan-degrading enzymes from Aspergillus terreus: Physicochemical features and functional studies on hydrolysis of cellulose pulp.

Two endo-ß-1,4-xylanases named XylT1 and XylT2, previously purified from Aspergillus terreus, were structurally investigated by fluorescence quenching and characterized with respect to their binding properties with phenolic compounds. Neutral and charged quenchers had access to both enzymes in neutral and alkaline pHs. The greatest access was noted for the negative quencher, possibly due to positive amino acid residues in the vicinity of tryptophan. These tryptophan environments may partially explain the conformational differences and lower binding constants of phenolic compounds for XylT2 than XylT1Phenolic compounds had lower binding constants for XylT2 than XylT1. These results show that xylanases present structural and functional differences, despite belonging to similar families. XylT1 and XylT2 were also evaluated for their ability to hydrolyze cellulose pulp in different stages of bleaching. Both enzymes promoted hydrolysis of cellulose pulps, which was confirmed by the release of total reducing sugars, pentoses and chromophoric material. Analysis of released xylooligosaccharides demonstrated a preferential release of xylobiose. None of xylanases released glucose, showing that they do not hydrolyze the cellulose present in the pulp, making both enzymes excellent choices for bio-bleaching applications.

A biotechnology perspective of fungal proteases.

Proteases hydrolyze the peptide bonds of proteins into peptides and amino acids, being found in all living organisms, and are essential for cell growth and differentiation. Proteolytic enzymes have potential application in a wide number of industrial processes such as food, laundry detergent and pharmaceutical. Proteases from microbial sources have dominated applications in industrial sectors. Fungal proteases are used for hydrolyzing protein and other components of soy beans and wheat in soy sauce production. Proteases can be produced in large quantities in a short time by established methods of fermentation. The parameters such as variation in C/N ratio, presence of some sugars, besides several other physical factors are important in the development of fermentation process. Proteases of fungal origin can be produced cost effectively, have an advantage faster production, the ease with which the enzymes can be modified and mycelium can be easily removed by filtration. The production of proteases has been carried out using submerged fermentation, but conditions in solid state fermentation lead to several potential advantages for the production of fungal enzymes. This review focuses on the production of fungal proteases, their distribution, structural-functional aspects, physical and chemical parameters, and the use of these enzymes in industrial applications.

A biotechnology perspective of fungal proteases

Proteases hydrolyze the peptide bonds of proteins into peptides and amino acids, being found in all living organisms, and are essential for cell growth and differentiation. Proteolytic enzymes have potential application in a wide number of industrial processes such as food, laundry detergent and pharmaceutical. Proteases from microbial sources have dominated applications in industrial sectors. Fungal proteases are used for hydrolyzing protein and other components of soy beans and wheat in soy sauce production. Proteases can be produced in large quantities in a short time by established methods of fermentation. The parameters such as variation in C/N ratio, presence of some sugars, besides several other physical factors are important in the development of fermentation process. Proteases of fungal origin can be produced cost effectively, have an advantage faster production, the ease with which the enzymes can be modified and mycelium can be easily removed by filtration. The production of proteases has been carried out using submerged fermentation, but conditions in solid state fermentation lead to several potential advantages for the production of fungal enzymes. This review focuses on the production of fungal proteases, their distribution, structural-functional aspects, physical and chemical parameters, and the use of these enzymes in industrial applications.

Secretomic survey of Trichoderma harzianum grown on plant biomass substrates.

The present work aims at characterizing T. harzianum secretome when the fungus is grown in synthetic medium supplemented with one of the four substrates: glucose, cellulose, xylan, and sugarcane bagasse (SB). The characterization was done by enzymatic assays and proteomic analysis using 2-DE/MALDI-TOF and gel-free shotgun LC-MS/MS. The results showed that SB induced the highest cellulolytic and xylanolytic activities when compared with the other substrates, while remarkable differences in terms of number and distribution of protein spots in 2-DE gels were also observed among the samples. Additionally, treatment of the secretomes with PNGase F revealed that most spot trails in 2-DE gels corresponded to N-glycosylated proteoforms. The LC-MS/MS analysis of the samples identified 626 different protein groups, including carbohydrate-active enzymes and accessory, noncatalytic, and cell-wall-associated proteins. Although the SB-induced secretome displayed the highest cellulolytic and xylanolytic activities, it did not correspond to a higher proteome complexity because CM-cellulose-induced secretome was significantly more diverse. Among the identified proteins, 73% were exclusive to one condition, while only 5% were present in all samples. Therefore, this study disclosed the variation of T. harzianum secretome in response to different substrates and revealed the diversity of the fungus enzymatic toolbox.

An Acidic Thermostable Recombinant Aspergillus nidulans Endoglucanase Is Active towards Distinct Agriculture Residues.

Aspergillus nidulans is poorly exploited as a source of enzymes for lignocellulosic residues degradation for biotechnological purposes. This work describes the A. nidulans Endoglucanase A heterologous expression in Pichia pastoris, the purification and biochemical characterization of the recombinant enzyme. Active recombinant endoglucanase A (rEG A) was efficiently secreted as a 35 kDa protein which was purified through a two-step chromatography procedure. The highest enzyme activity was detected at 50°C/pH 4. rEG A retained 100% of activity when incubated at 45 and 55°C for 72 h. Purified rEG A kinetic parameters towards CMC were determined as K m = 27.5 ± 4.33 mg/mL, V max = 1.185 ± 0.11 mmol/min, and 55.8 IU (international units)/mg specific activity. Recombinant P. pastoris supernatant presented hydrolytic activity towards lignocellulosic residues such as banana stalk, sugarcane bagasse, soybean residues, and corn straw. These data indicate that rEG A is suitable for plant biomass conversion into products of commercial importance, such as second-generation fuel ethanol.

The hydrolysis of agro-industrial residues by holocellulose-degrading enzymes

Holocellulose structures from agro-industrial residues rely on main and side chain attacking enzymes with different specificities for complete hydrolysis. Combinations of crude enzymatic extracts from different fungal species, including Aspergillus terreus, Aspergillus oryzae, Aspergillus niger and Trichoderma longibrachiatum, were applied to sugar cane bagasse, banana stem and dirty cotton residue to investigate the hydrolysis of holocellulose structures. A. terreus and A. oryzae were the best producers of FPase and xylanase activities. A combination of A. terreus and A. oryzae extracts in a 50% proportion provided optimal hydrolysis of dirty cotton residue and banana stem. For the hydrolysis of sugar cane bagasse, the best results were obtained with samples only containing A. terreus crude extract.

Production and characterization of an enzyme complex from a new strain of Clostridium thermocellum with emphasis on its xylanase activity

A new bacterial strain (ISO II) was isolated from manure cow and identified as phylogenetically close to the thermophilic cellulolytic bacterium Clostridium thermocellum. The new strain produced extracellular xylanase, pectinase, mannanase and cellulase activities when grown in liquid culture medium containing banana stem as carbon source. The enzyme production profile after growth on banana stem showed that xylanase and cellulase activities were detected in different incubation periods. An enzyme complex containing xylanase, cellulase and mannanase activities was isolated from culture supernatant samples of strainISO II. The complex was partially purified by ultrafiltration and gel filtration chromatography on Sephacryl S-300. Zymogram analysis after SDS-PAGE presented at least 05 subunits with xylanase activity. The enzyme showed single protein and xylanase activity bands after electrophoresis under non-denaturing conditions. The hydrolysis of xylan was optimal at temperature range of 55-75°C and pH 6.0. Xylanase activity was quite stable at 65°C, retaining 80 percent of its original activity after 12 h incubation. The apparent Km values, using insoluble and soluble arabinoxylans as substrates, were 1.54 and 11.53 mg/mL, respectively. Xylanase was activated by dithiothreitol, L-tryptophan and L-cysteine and strongly inhibited by N-bromosuccinimide and CoCl2. The characterization of mannanase showed Km and temperature optimum of 0.846 mg/mL and 65°C, respectively and pH 8.0. By contrast to xylanase, it was less stable at 65°C with half-life of 2.5 h and inhibited by dithiothreitol and Ca2+.

Uma nova linhagem de bactéria (ISO II) foi isolada de esterco bovino e identificada como filogeneticamente próxima à bactéria termofílica Clostridium thermocellum. A nova linhagem produziu atividades de xilanase, mananase, pectinase e celulase quando cultivada em meio de cultura líquido contendo engaço de bananeira como fonte de carbono. O perfil de produção enzimática após crescimento em engaço de bananeira mostrou que as atividades de xilanase e celulase foram detectadas em diferentes períodos de incubação. Um complexo enzimático, contendo atividades de xilanase, celulase e mananase, foi isolado de amostras de sobrenadante do meio de cultura da linhagem ISO II crescida em engaço de bananeira. O complexo foi parcialmente purificado por ultrafiltração e cromatografia de filtração em gel em coluna de Sephacryl S-300. Análise de zimograma mostrou 05 sub-unidades com atividade de xilanase. A amostra enzimática apresentou bandas únicas de proteína e atividade de xilanase após eletroforese sob condições não-desnaturantes. A hidrólise de xilana foi ótima no intervalo de temperatura de 55-75°C e pH 6,0. A xilanase foi estável a 65°C, mantendo 80 por cento de sua atividade original após 12 h de incubação. Os valores de Km aparente, usando arabinoxilanas insolúveis e solúveis como substratos, foram 1,54 and 11,53 mg/mL, respectivamente. A xilanase foi ativada por ditiotreitol, L-triptofano and L-cisteina e fortemente inibida por N-bromosuccinamida e CoCl2. A caracterização da mananase do complexo mostrou Km e temperatura ótima de 0,846 mg/mL e 65°C, respectivamente e pH 8,0. Ao contrário da xilanase, a mananase foi menos estável a 65°C com meia vida de 2,5 h e inibida por ditiotreitol e Ca2+.

Application of xylanases from Amazon Forest fungal species in bleaching of eucalyptus kraft pulps

Crude xylanase preparations from Penicillium corylophilum, Aspergillus niger and Trichoderma longibrachiatum were used to treat Eucalyptus kraft pulp, prior to chlorine dioxide and alkaline bleaching sequences. The enzyme pretreatment improved brightness and delignification of non-delignified and oxygen-bleached samples of eucalyptus kraft pulp. Xylanase preparations from T. longibrachiatum and P. corylophilum were more effective to reduce pulp kappa number. A small reduction in viscosity was obtained when the oxygen-bleached pulp was treated with xylanase preparation from A. niger. For all enzyme samples, the best release of chromophoric material from the pulp was at 237 nm. The enzyme preparation from P. corylophilum was responsible for the highest release of reducing sugar at a dosage interval of 10-20 IU/g dry weight pulp. Scanning electron microscopy studies of oxygen-bleached pulp after xylanase treatment revealed morphological changes, including holes, cracks, filament forming and peeling.

Amostras de xilanases de extratos brutos de Penicillium corylophilum, Aspergillus niger e Trichoderma longibrachiatum foram utilizadas no branqueamento de polpa kraft de eucalipto antes das seqüências alcalina e dióxido de cloro. O pré-tratamento enzimático melhorou a alvura e o processo de deslignificação de amostras de polpa kraft de eucalipto não-tratada e tratada com oxigênio. Amostras de xilanases de T. longibrachiatum e P. corylophilum foram mais efetivas na redução do número kappa da polpa. A polpa tratada com oxigênio sofreu uma pequena redução na sua viscosidade quando incubada com amostra de xilanase de A. niger. Para todas as amostras de xilanases, a maior liberação de cromóforos da polpa foi a 237 nm. A amostra de xilanase de P. corylophilum liberou maior quantidade de açúcar redutor da polpa, utilizando dosagem de 10-20 UI/g de peso seco da polpa. Estudos de microscopia eletrônica de varredura revelaram várias alterações morfológicas da polpa tratada com oxigênio tais como a formação de buracos, rachaduras e filamentos.

Characterization of pectinases from Acrophialophora nainiana and Trichoderma harzianum strain T6

Duas preparações de pectinases foram isoladas de culturas em estado líquido de Acrophialophora nainiana e Trichoderma harzianum linhagem T6, contendo pectina como a fonte de carbono. As atividades de pectina liase e pectina metilesterase foram somente detectadas nas preparações enzimáticas de A. nainiana. A exo-polymethylgalacturonase de A. nainiana foi mais ativa a pH 7,0 e 60oC, enquanto que a atividade ótima da exo-polymethylgalacturonase de T. harzianum linhagem T6 foi obtida a pH 4,3 e 40oC. As suas estabilidades a 40, 50 e 65oC diferiram, sendo que a atividade de exo-polymethylgalacturonase de A. nainiana apresentou maior estabilidade. Ambas preparações enzimáticas mostraram boa estabilidade em pH ácido. Os extratos brutos foram parcialmente parcialmente purificados por ultrafiltração e cromatografia de filtração em gel em coluna de Sephacryl S-100. Estudos de parâmetros cinéticos mostraram que os valores de Km mais baixos foram obtidos com exo-polimetilgalacturonase de T. harzianum linhagem T6. O tratamento de sucos de frutas com amostras de pectinase de A. nainiana e T. harzianumlinhagem T6 resultou em um decréscimo na viscosidade. A pectinase de T. harzianum linhagem T6 parece ser mais eficiente na redução da turbidez de suco de maça. Somente a pectinase de T. harzianum linhagem T6 foi capaz de extrair suco da banana.

Purification and characterization of a new Xylanase from Humicola grisea var. Thermoidea

O fungo termofílico Humicola grisea var. secreta xilanase extracelular quando cultivado em meios sólidos e líquidos contendo farelo de trigo e engaço de bananeira como substratos, respectivamente. A temperatura de 55ºC, xilanase do filtrado de meio de cultura de H. grisea var. thermoidea cultivado em engaço de bananeira reteve 50% de sua atividade após 28 de incubação. Uma xilanase (X2) foi isolada de culturas de estado sólido contendo farelo de trigo como fonte de carbono. X2 foi purificada por ultrafiltração, seguido por cromatografias de interação hidrofóbica e troca iônica em resinas de Phenyl-Sepharose e DEAE-Sepharose, respectivamente. A enzima apresentou peso molecular de 29 kDa, como determinado por SDS-PAGE. A enzima purificada foi mais ativa em intervalos de pH e temperatura de 4,5-6,5 and 55-60ºC, respectivamente. Além disso, X2 mostrou termoestabilidade a 60ºC com meia vida de aproximadamente 5,5 h. Os valores de Km aparente, utilizando arabinoxilanas solúveis e insolúveis, foram 10,87 and 11,20 mg/ml, respectivamente.

Production of xylan-degrading enzymes by a Trichoderma harzianum strain

O fungo Trichoderma harzianum linhagem 4 produziu, enzimas xilanolíticas quando crescido em meios de cultura líquido contendo xilana como indutor. Atividade celulolítica não foi detectada. O tipo de xilana presente no meio de cultura influenciou a indução das enzimas xilanolíticas. As enzimas foram detectadas em diferentes períodos de incubação. SDS-PAGE de amostras de meios de cultura apresentou uma variedade de bandas protéicas com alto e baixo pesos moleculares.

Purification and characterization of a low molecular weight xylanase from solid-state cultures of Aspergillus fumigatus fresenius

A xylan-degrading enzyme (xylanase II) was purified to apparent homogeneity from solid-state cultures of Aspergillus fumigatus Fresenius. The molecular weight of xylanase II was found to be 19 and 8.5 kDa, as estimated by SDS-PAGE and gel filtration on FPLC, respectively. The purified enzyme was most active at 55 (degree)C and pH 5.5. It was specific to xylan. The apparent Km and Vmax values on soluble and indisoluble xylans from oat spelt and birchwood showed that xylanase II was most active on soluble birchwood xylan. Studies on hydrolysis products of various xylans and xylooligormers by xylanase II on HPLC showed that the enzyme released a range of products from xylobiose to xylohexaose, with a small amount of xylose from xylooligomers, and presented transferase activity.

Carbohydrate-hydrolysing enzyme activity production by solid-state cultures of Trichoderma harzianum strains

Linhagens de Trichoderma harzianum produzem, quando crescidas em meio sólido contendo farelo de trigo como fonte de carbono, atividades enzimáticas que hidrolisam diferentes tipos de carboidratos. As maiores atividades enzimáticas foram de ß-glicosidase, ß-xilosidase e alfa-amilase, enquanto que foram observados níveis muito baixos de atividades de ß-manosidase, alfa-glucuronidase, carboximetil celulase e FPase. As linhagens 4 (CNP 17) e 8 (SS13) foram os melhores produtores de atividade enzimática. O método de extraçäo enzimática na presença de Tween 80, tampäo acetato de sódio, 25mM, pH 5.0 e homogenizaçäo em liquidificador foi menos eficiente que o procedimento que utiliza apenas a soluçäo tampäo descrita acima. O conteúdo de proteína obtido pelo método de extraçäo na ausência de tween 80 foi muito baixo. A atividade de carboximetil celulase foi detectada somente através da extraçäo com Teen 80