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1.
Chemosphere ; 351: 141168, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38215828

RESUMO

The threat of climate change, which includes shifts in salinity and temperature, has generated a global concern for marine organisms. These changes directly impact them and may alter their susceptibility to contaminants, such as terbium (Tb), found in electronic waste. This study assessed how decreased and increased salinity, as well as increased temperature, modulates Tb effects in Mytilus galloprovincialis mussels. After an exposure period of 28 days, Tb bioaccumulation and biochemical changes were evaluated. Results indicated no significant modulation of salinity and temperature on Tb accumulation, suggesting detoxification mechanisms and adaptations. Further analysis showed that Tb exposure alone caused antioxidant inhibition and neurotoxicity. When exposed to decreased salinity, these Tb-exposed organisms activated defense mechanisms, a response indicative of osmotic stress. Moreover, increased salinity also led to increased oxidative stress and metabolic activity in Tb-exposed organisms. Additionally, Tb-exposed organisms responded to elevated temperature with altered biochemical activities indicative of damage and stress response. Such responses suggested that Tb effects were masked by osmotic and heat stress. This study provides valuable insights into the interactions between temperature, salinity, and contaminants such as Tb, impacting marine organisms. Understanding these relationships is crucial for mitigating climate change and electronic waste effects on marine ecosystems.


Assuntos
Mytilus , Poluentes Químicos da Água , Animais , Temperatura , Térbio/metabolismo , Térbio/farmacologia , Salinidade , Ecossistema , Poluentes Químicos da Água/análise , Estresse Oxidativo , Mytilus/metabolismo
2.
World J Microbiol Biotechnol ; 40(3): 79, 2024 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-38281285

RESUMO

Recovery of rare earth elements (REEs) from wastewater with Bacillus subtilis (B. subtilis) during culture is promising due to its environmental benefits. However, the effects of REEs in the culture media on B. subtilis are poorly understood. This study aims to investigate the effects of the terbium (Tb(III)), a typical rare earth element, on the cell growth, sporulation, and spore properties of B. subtilis. Tb(III) can suppress bacterial growth while enhancing spore tolerance to wet heat. Spore germination and content of dipicolinic acid (DPA) were promoted at low concentrations of Tb(III) while inhibited at a high level, but an inverse effect on initial sporulation appeared. Scanning electron microscope and energy dispersive spectrometer detection indicated that Tb(III) complexed cells or spores and certain media components simultaneously. The germination results of the spores after elution revealed that Tb(III) attached to the spore surface was a key effector of spore germination. In conclusion, Tb(III) directly or indirectly regulated both the nutrient status of the media and certain metabolic events, which in turn affected most of the properties of B. subtilis. Compared to the coat-deficient strain, the wild-type strain grew faster and was more tolerant to Tb(III), DPA, and wet heat, which in turn implied that it was more suitable for the recovery of REEs during cultivation. These findings provide fundamental insights for the recovery of rare earths during the culture process using microorganisms.


Assuntos
Bacillus subtilis , Térbio , Bacillus subtilis/metabolismo , Térbio/metabolismo , Térbio/farmacologia , Esporos Bacterianos , Temperatura Alta , Proteínas de Bactérias/metabolismo
3.
Biomater Adv ; 153: 213531, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37429046

RESUMO

Myocardial hypoxia reperfusion (H/R) injury is the paradoxical exacerbation of myocardial damage, caused by the sudden restoration of blood flow to hypoxia affected myocardium. It is a critical contributor of acute myocardial infarction, which can lead to cardiac failure. Despite the current pharmacological advancements, clinical translation of cardioprotective therapies have proven challenging. As a result, researchers are looking for alternative approaches to counter the disease. In this regard, nanotechnology, with its versatile applications in biology and medicine, can confer broad prospects for treatment of myocardial H/R injury. Herein, we attempted to explore whether a well-established pro-angiogenic nanoparticle, terbium hydroxide nanorods (THNR) can ameliorate myocardial H/R injury. For this study, in vitro H/R-injury model was established in rat cardiomyocytes (H9c2 cells). Our investigations demonstrated that THNR enhance cardiomyocyte survival against H/R-induced cell death. This pro-survival effect of THNR is associated with reduction of oxidative stress, lipid peroxidation, calcium overload, restoration of cytoskeletal integrity and mitochondrial membrane potential as well as augmentation of cellular anti-oxidant enzymes such as glutathione-s-transferase (GST) and superoxide dismutase (SOD) to counter H/R injury. Molecular analysis revealed that the above observations are traceable to the predominant activation of PI3K-AKT-mTOR and ERK-MEK signalling pathways by THNR. Concurrently, THNR also exhibit apoptosis inhibitory effects mainly by suppression of pro-apoptotic proteins like Cytochrome C, Caspase 3, Bax and p53 with simultaneous restoration of anti-apoptotic protein, Bcl-2 and Survivin. Thus, considering the above attributes, we firmly believe that THNR have the potential to be developed as an alternative approach for amelioration of H/R injury in cardiomyocytes.


Assuntos
Traumatismo por Reperfusão Miocárdica , Nanotubos , Animais , Ratos , Miócitos Cardíacos/metabolismo , Térbio/metabolismo , Térbio/farmacologia , Térbio/uso terapêutico , Fosfatidilinositol 3-Quinases/metabolismo , Linhagem Celular , Hipóxia/metabolismo , Traumatismo por Reperfusão Miocárdica/tratamento farmacológico , Traumatismo por Reperfusão Miocárdica/metabolismo
4.
Nat Commun ; 14(1): 3426, 2023 06 09.
Artigo em Inglês | MEDLINE | ID: mdl-37296103

RESUMO

Compact RNA structural motifs control many aspects of gene expression, but we lack methods for finding these structures in the vast expanse of multi-kilobase RNAs. To adopt specific 3-D shapes, many RNA modules must compress their RNA backbones together, bringing negatively charged phosphates into close proximity. This is often accomplished by recruiting multivalent cations (usually Mg2+), which stabilize these sites and neutralize regions of local negative charge. Coordinated lanthanide ions, such as terbium (III) (Tb3+), can also be recruited to these sites, where they induce efficient RNA cleavage, thereby revealing compact RNA 3-D modules. Until now, Tb3+ cleavage sites were monitored via low-throughput biochemical methods only applicable to small RNAs. Here we present Tb-seq, a high-throughput sequencing method for detecting compact tertiary structures in large RNAs. Tb-seq detects sharp backbone turns found in RNA tertiary structures and RNP interfaces, providing a way to scan transcriptomes for stable structural modules and potential riboregulatory motifs.


Assuntos
RNA , Térbio , Conformação de Ácido Nucleico , RNA/metabolismo , Térbio/metabolismo , Térbio/farmacologia , Motivos de Nucleotídeos , Cátions
5.
Chemosphere ; 337: 139299, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37353169

RESUMO

The increasing demand for electric and electronic equipment has led to a rise in potentially hazardous electronic waste, including rare-earth elements (REEs), such as terbium (Tb), which have been already detected in aquatic systems. This study investigated the biochemical effects of anthropogenic Tb on mussels over a 28-day period. The mussels were exposed to different concentrations of Tb (0, 5, 10, 20, 40 µg/L), and biomarkers related to metabolism, oxidative stress, cellular damage, and neurotoxicity were evaluated. Bioaccumulation of Tb in the mussels' tissue increased with exposure concentrations, but the bioconcentration factor remained similar between treatments. Exposure to Tb enhanced glycogen consumption and decreased metabolic capacity which could be seen as a physiological adaptation to limit Tb accumulation. Antioxidant defenses and glutathione S-transferases showed a more complex dose-response, with enzymatic responses increasing until 10 µg/L but then returning to control levels at 20 µg/L. At 40 µg/L, enzymatic responses were also enhanced but to a lower extent than at 10 µg/L. The presence of Tb had clearly an inhibitory effect on biotransformation enzymes such as carboxylesterases in a dose-dependent manner. Likely, thanks to biochemical and physiological adaptations, no cellular damage or neurotoxicity was observed in any treatments, confirming the mussels' ability to tolerate Tb exposure. Nevertheless, prolonged exposure to these concentrations could lead to harmful consequences when facing other environmental stressors, such as misallocating energy resources for growth, reproduction, and defense mechanisms.


Assuntos
Mytilus , Poluentes Químicos da Água , Animais , Mytilus/metabolismo , Térbio/metabolismo , Térbio/farmacologia , Poluentes Químicos da Água/análise , Estresse Oxidativo , Antioxidantes/metabolismo , Biomarcadores/metabolismo
6.
Biosensors (Basel) ; 12(2)2022 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-35200328

RESUMO

In spore-forming bacteria such as Bacillus and Clostridium, the vegetative cells form highly durable hard shells called endospores inside the bacteria to survive as the growth environment deteriorates. Because of these properties, endospores can cause food poisoning and medical accidents if they contaminate food, medicine, or other products, and it is required for technology to detect the spores at the manufacturing site. In this study, we focused on the surface-enhanced Raman scattering (SERS) method for the sensitive detection of dipicolinic acid (DPA), a molecular marker of endospores. We constructed Fe3O4/Ag core-shell functional silver nanoparticles that specifically bind to DPA, and investigated a method for the qualitative detection of DPA by SERS and the quantitative detection of DPA by fluorescence method using a terbium complex formed on the surface. As a result, the concentration of the functional silver nanoparticles constructed could detect spore-derived DPA by fluorescence detection method, and SERS was several tens of nM. The functionalized nanoparticles can detect DPA quantitatively and qualitatively, and are expected to be applied to detection technology in the production of food and pharmaceuticals.


Assuntos
Nanopartículas Metálicas , Prata , Bactérias/metabolismo , Análise Espectral Raman/métodos , Esporos Bacterianos/metabolismo , Térbio/metabolismo
7.
J Am Chem Soc ; 143(35): 14287-14299, 2021 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-34432449

RESUMO

Lanmodulin is the first natural, selective macrochelator for f elements-a protein that binds lanthanides with picomolar affinity at 3 EF hands, motifs that instead bind calcium in most other proteins. Here, we use sensitized terbium luminescence to probe the mechanism of lanthanide recognition by this protein as well as to develop a terbium-specific biosensor that can be applied directly in environmental samples. By incorporating tryptophan residues into specific EF hands, we infer the order of metal binding of these three sites. Despite lanmodulin's remarkable lanthanide binding properties, its coordination of approximately two solvent molecules per site (by luminescence lifetime) and metal dissociation kinetics (koff = 0.02-0.05 s-1, by stopped-flow fluorescence) are revealed to be rather ordinary among EF hands; what sets lanmodulin apart is that metal association is nearly diffusion limited (kon ≈ 109 M-1 s-1). Finally, we show that Trp-substituted lanmodulin can quantify 3 ppb (18 nM) terbium directly in acid mine drainage at pH 3.2 in the presence of a 100-fold excess of other rare earths and a 100 000-fold excess of other metals using a plate reader. These studies not only yield insight into lanmodulin's mechanism of lanthanide recognition and the structures of its metal binding sites but also show that this protein's unique combination of affinity and selectivity outperforms synthetic luminescence-based sensors, opening the door to rapid and inexpensive methods for selective sensing of individual lanthanides in the environment and in-line monitoring in industrial operations.


Assuntos
Proteínas de Transporte/metabolismo , Térbio/análise , Térbio/metabolismo , Águas Residuárias/análise , Proteínas de Transporte/química , Proteínas de Transporte/genética , Motivos EF Hand/genética , Luminescência , Medições Luminescentes , Mineração , Mutação , Ligação Proteica , Térbio/química , Triptofano/química
8.
J Biol Inorg Chem ; 26(1): 1-11, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-33146770

RESUMO

The interaction of Tb3+ and La3+ cations with different photosystem II (PSII) membranes (intact PSII, Ca-depleted PSII (PSII[-Ca]) and Mn-depleted PSII (PSII[-Mn]) membranes) was studied. Although both lanthanide cations (Ln3+) interact only with Ca2+-binding site of oxygen-evolving complex (OEC) in PSII and PSII(-Ca) membranes, we found that in PSII(-Mn) membranes both Ln3+ ions tightly bind to another site localized on the oxidizing side of PSII. Binding of Ln3+ cations to this site is not protected by Ca2+ and is accompanied by very effective inhibition of Mn2+ oxidation at the high-affinity (HA) Mn-binding site ([Mn2+ + H2O2] couple was used as a donor of electrons). The values of the constant for inhibition of electron transport Ki are equal to 2.10 ± 0.03 µM for Tb3+ and 8.3 ± 0.4 µM for La3+, whereas OEC inhibition constant in the native PSII membranes is 323 ± 7 µM for Tb3+. The value of Ki for Tb3+ corresponds to Ki for Mn2+ cations in the reaction of diphenylcarbazide oxidation via HA site (1.5 µM) presented in the literature. Our results suggest that Ln3+ cations bind to the HA Mn-binding site in PSII(-Mn) membranes like Mn2+ or Fe2+ cations. Taking into account the fact that Mn2+ and Fe2+ cations bind to the HA site as trivalent cations after light-induced oxidation and the fact that Mn cation bound to the HA site (Mn4) is also in trivalent state, we can suggest that valency may be important for the interaction of Ln3+ with the HA site.


Assuntos
Lantânio/metabolismo , Complexo de Proteína do Fotossistema II/metabolismo , Térbio/metabolismo , 2,6-Dicloroindofenol/química , Sítios de Ligação , Cálcio/metabolismo , Transporte de Elétrons/efeitos dos fármacos , Transporte de Elétrons/efeitos da radiação , Cinética , Luz , Manganês/metabolismo , Oxirredução/efeitos dos fármacos , Oxigênio/metabolismo , Complexo de Proteína do Fotossistema II/química , Proteínas de Plantas/metabolismo , Ligação Proteica , Spinacia oleracea/enzimologia , Tilacoides/química
9.
Adv Biosyst ; 4(3): e1900301, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-32293148

RESUMO

The usage of biomineralization processes performed by living microalgae to create 3D nanostructured materials are advantageous compared to conventional synthesis routes. Exploitation of in vivo shaping using living cells leads to inorganic intricate biominerals, produced with low environmental impact. Since biomineralization processes are genetically controlled, the formation of nanostructured materials is highly reproducible. The shells of microalgae, like coccoliths, are particularly of great interest. This study shows the generation of mesoporous highly structured functional materials with induced optoelectronical properties using in vivo processes of the microalga species Emiliania huxleyi. It demonstrates the metabolically driven incorporation of the lanthanide terbium into the coccoliths of E. huxleyi as a route for the synthesis of finely patterned photoluminescent particles by feeding the microalgae with this luminescent element. The resulting green luminescent particles have hierarchical ordered pores on the nano- and microscale and may act as powerful tools for many applications; they may serve as imaging probes for biomedical applications, or in microoptics. The luminescent coccoliths combine a unique hierarchical structure with a characteristic luminescence pattern, which make them superior to conventional produced Tb doted material. With this study, the possibility of the further exploitation of coccoliths as advanced functional materials for nanotechnological applications is given.


Assuntos
Biomineralização/fisiologia , Microalgas , Nanoestruturas/química , Nanotecnologia/métodos , Haptófitas/química , Haptófitas/metabolismo , Substâncias Luminescentes/química , Substâncias Luminescentes/metabolismo , Microalgas/química , Microalgas/metabolismo , Microalgas/ultraestrutura , Térbio/química , Térbio/metabolismo
10.
Biochemistry ; 58(24): 2730-2739, 2019 06 18.
Artigo em Inglês | MEDLINE | ID: mdl-31124357

RESUMO

Despite decades of research on ion-sensing proteins, gaps persist in the understanding of ion binding affinity and selectivity even in well-studied proteins such as calmodulin. Site-directed mutagenesis is a powerful and popular tool for addressing outstanding questions about biological ion binding and is employed to selectively deactivate binding sites and insert chromophores at advantageous positions within ion binding structures. However, even apparently nonperturbative mutations can distort the binding dynamics they are employed to measure. We use Fourier transform infrared (FTIR) and ultrafast two-dimensional infrared (2D IR) spectroscopy of the carboxylate asymmetric stretching mode in calmodulin as a mutation- and label-independent probe of the conformational perturbations induced in calmodulin's binding sites by two classes of mutation, tryptophan insertion and carboxylate side-chain deletion, commonly used to study ion binding in proteins. Our results show that these mutations not only affect ion binding but also induce changes in calmodulin's conformational landscape along coordinates not probed by vibrational spectroscopy, remaining invisible without additional perturbation of binding site structure. Comparison of FTIR line shapes with 2D IR diagonal slices provides a clear example of how nonlinear spectroscopy produces well-resolved line shapes, refining otherwise featureless spectral envelopes into more informative vibrational spectra of proteins.


Assuntos
Cálcio/metabolismo , Calmodulina/genética , Calmodulina/metabolismo , Térbio/metabolismo , Substituição de Aminoácidos , Animais , Sítios de Ligação/genética , Mutagênese Sítio-Dirigida , Ligação Proteica/genética , Conformação Proteica , Ratos , Espectroscopia de Infravermelho com Transformada de Fourier
11.
Biochemistry ; 58(25): 2822-2833, 2019 06 25.
Artigo em Inglês | MEDLINE | ID: mdl-31140788

RESUMO

Tyrosine nitration is a protein post-translational modification that is predominantly non-enzymatic and is observed to be increased under conditions of nitrosative stress and in numerous disease states. A small protein motif (14-18 amino acids) responsive to tyrosine nitration has been developed. In this design, nitrotyrosine replaced the conserved Glu12 of an EF-hand metal-binding motif. Thus, the non-nitrated peptide bound terbium weakly. In contrast, tyrosine nitration resulted in a 45-fold increase in terbium affinity. Nuclear magnetic resonance spectroscopy indicated direct binding of nitrotyrosine to the metal and EF-hand-like metal contacts in this designed peptide. Nitrotyrosine is an efficient quencher of fluorescence. To develop a sensor of tyrosine nitration, the initial design was modified to incorporate Glu residues at EF-hand positions 9 and 16 as additional metal-binding residues, to increase the terbium affinity of the peptide with unmodified tyrosine. This peptide with a tyrosine at residue 12 bound terbium and effectively sensitized terbium luminescence. Tyrosine nitration resulted in a 180-fold increase in terbium affinity ( Kd = 1.6 µM) and quenching of terbium luminescence. This sequence was incorporated as an encoded protein tag and applied as a turn-off fluorescent protein sensor of tyrosine nitration. The sensor was responsive to nitration by peroxynitrite, with fluorescence quenched upon nitration. The greater terbium affinity upon tyrosine nitration resulted in a large dynamic range and sensitivity to substoichiometric nitration. An improved approach for the synthesis of peptides containing nitrotyrosine was also developed, via the in situ silyl protection of nitrotyrosine. This work represents the first designed, encodable protein motif that is responsive to tyrosine nitration.


Assuntos
Peptídeos/metabolismo , Processamento de Proteína Pós-Traducional , Tirosina/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Escherichia coli/genética , Luminescência , Proteínas Ligantes de Maltose/genética , Proteínas Ligantes de Maltose/metabolismo , Peptídeos/síntese química , Peptídeos/genética , Ácido Peroxinitroso/química , Estudo de Prova de Conceito , Ligação Proteica , Engenharia de Proteínas , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Térbio/química , Térbio/metabolismo
12.
Anaerobe ; 58: 80-88, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30926439

RESUMO

The germination of Clostridium difficile spores is an important stage of the C. difficile life cycle. In other endospore-forming bacteria, the composition of the medium in which the spores are generated influences the abundance of germination-specific proteins, thereby influencing the sensitivity of the spores towards germinants. In C. difficile media composition on the spores has only been reported to influence the number of spores produced. One of the measures of spore germination is the analysis of the release of DPA from the spore core. To detect DPA release in real time, terbium chloride is often added to the germination conditions because Tb3+ complexes with the released DPA and this can be detected using fluorescence measurements. Although C. difficile spores germinate in response to TA and glycine, recently calcium was identified as an enhancer for spore germination. Here, we find that germination by spores prepared in peptone rich media, such as 70:30, is positively influenced by terbium. We hypothesize that, in these assays, Tb3+ functions similarly to calcium. Although the mechanism(s) causing increased sensitivity of the C. difficile spores that are prepared in peptone rich media to terbium is still unknown, we suggest that the TbCl3 concentration used in the analysis of C. difficile DPA release be carefully titrated so as not to misinterpret future findings.


Assuntos
Clostridioides difficile/crescimento & desenvolvimento , Substâncias de Crescimento/metabolismo , Ácidos Picolínicos/análise , Esporos Bacterianos/crescimento & desenvolvimento , Coloração e Rotulagem/métodos , Térbio/metabolismo , Clostridioides difficile/efeitos dos fármacos , Clostridioides difficile/metabolismo , Meios de Cultura/química , Fluorescência , Esporos Bacterianos/efeitos dos fármacos , Esporos Bacterianos/metabolismo
13.
Metallomics ; 11(5): 914-924, 2019 05 22.
Artigo em Inglês | MEDLINE | ID: mdl-30848261

RESUMO

Lanthanides are rare-earth metals with a broad range of applications in biological research and medicine. In addition to their unique magnetic and spectroscopic properties, lanthanides are also effective mimics of calcium and can stimulate or inhibit the function of calcium-binding proteins. Cadherins are a large family of calcium-binding proteins that facilitate cell adhesion and play key roles in embryo development, tissue homeostasis and tumour metastasis. However, whether lanthanides can bind cadherins and functionally replace calcium binding has not been comprehensively explored. In this study, we investigated the effect of lanthanide binding on cadherin structure and function using terbium, which is a commonly used lanthanide for protein spectroscopy and a proposed anti-cancer agent. We demonstrate that terbium can compete with calcium for binding to calcium-binding sites in cadherins. Terbium binding to cadherins abolished their cell adhesive activity and rendered cadherins sensitive to proteolysis by trypsin. Molecular dynamics simulations indicate that replacement of calcium by terbium results in structural rearrangements and increases the flexibility of the cadherin ectodomain. These changes in structure and dynamics are likely to underlie the inability of lanthanide-bound cadherins to support cell adhesion. Taken together, our findings further knowledge on lanthanide interactions with calcium-binding proteins and provide new insight into the influence of metal chemistry on cadherin structure, dynamics and function.


Assuntos
Caderinas/metabolismo , Cálcio/metabolismo , Elementos da Série dos Lantanídeos/metabolismo , Animais , Células CHO , Caderinas/química , Adesão Celular , Agregação Celular , Cricetulus , Humanos , Íons , Simulação de Dinâmica Molecular , Ligação Proteica , Estrutura Terciária de Proteína , Proteólise , Térbio/metabolismo , Tripsina/metabolismo
14.
J Inorg Biochem ; 193: 15-24, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30660047

RESUMO

N­(6­Aminohexyl)­5­chloro­1­naphthalenesulfonamide (W-7), a kind of adjuvant chemotherapy, can bind to calmodulin and inhibit Ca2+/calmodulin-regulated enzyme activities and cell proliferation. Similar to calmodulin, euplotes octocarinatus centrin (EoCen) belongs to EF-hand superfamily of calcium-binding proteins. It is associated with nucleotide excision repair (NER), cell division cycle and ciliogenesis. In the present study, the comparative interaction of W-7 with EoCen was first examined by using various spectroscopic, calorimetric methods and molecular docking. The obtain results recommend that only one W-7 molecule is identified binding to the C-terminal hydrophobic pocket of centrin that normally plays a role in anchoring targets. Methyl groups of Ala126, Met141, Ile161 and M162 of C-terminal may react with W-7 chloronaphthalene ring, other aliphatic or aromatic side-chains in a deep hydrophobic pocket of protein. Circular dichroism (CD) and fluorescence lifetime experiments reveal that W-7 triggers a conformational change of centrin. As a result, W-7 is identified to be an antagonist of centrin. It appears to inhibit the centrin-mediated activation of target proteins by blocking the hydrophobic pocket. Moreover, the complex formation leads to affinity decrease of Tb3+ binding to C-terminal of protein and self-assembly affected. Our present study provides the first view of centrin recognizing a naphthalene-sulfonamide derivative. It is proposed that W-7 and its analogues can serve as a useful tool for research on the participation of centrin in biological processes and cell biology-related studies.


Assuntos
Proteínas de Ligação ao Cálcio/metabolismo , Sulfonamidas/metabolismo , Térbio/metabolismo , Sítios de Ligação , Proteínas de Ligação ao Cálcio/antagonistas & inibidores , Proteínas de Ligação ao Cálcio/química , Euplotes/química , Simulação de Acoplamento Molecular , Ligação Proteica , Sulfonamidas/química , Térbio/química
15.
ACS Synth Biol ; 7(11): 2514-2517, 2018 11 16.
Artigo em Inglês | MEDLINE | ID: mdl-30376298

RESUMO

Encapsulins are robust and engineerable proteins that form hollow, nanosized, icosahedral capsids, making them attractive vehicles for drug delivery, scaffolds for synthetic bionanoreactors, and artificial organelles. A major limitation of native encapsulins is the small size of pores in the protein shell. At 3 Å diameter, these pores impose significant restrictions on the molecular weight and diffusion rate of potential substrates. By redesigning the pore-forming loop region in encapsulin from Thermotoga maritima, we successfully enlarged pore diameter up to an estimated 11 Å and increased mass transport rates by 7-fold as measured by lanthanide ion diffusion assay. Our study demonstrates the high tolerance of encapsulin for protein engineering and has created a set of novel, functionally improved scaffolds for applications as bionanoreactors.


Assuntos
Proteínas de Bactérias/química , Nanoestruturas/química , Engenharia de Proteínas , Sequência de Aminoácidos , Proteínas de Bactérias/metabolismo , Difusão , Portadores de Fármacos/química , Íons/química , Porosidade , Térbio/química , Térbio/metabolismo , Thermotoga maritima/metabolismo
16.
Res Microbiol ; 169(10): 649-658, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29928986

RESUMO

Despite many innovations, meeting both economic and ecological requirements remains challenging for conventional resource recovery technology. The development of highly selective peptides puts a new competitor on the market. We present an approach to identify peptides for resource recovery using Phage Surface Display. Here, we describe the development of peptides for binding of rare earth element terbium-containing solids and for removal and enrichment of the heavy metal ions of cobalt and nickel out of waste waters and leaching solutions. We identified phage displaying specific peptides with ∼100× enhanced affinity towards terbium-containing solids or ∼20× enhanced affinity towards nickel (∼3× cobalt).


Assuntos
Bacteriófagos/metabolismo , Biotecnologia/métodos , Peptídeos/química , Adsorção , Bacteriófagos/química , Bacteriófagos/genética , Cobalto/química , Cobalto/metabolismo , Níquel/química , Níquel/metabolismo , Peptídeos/genética , Peptídeos/metabolismo , Térbio/química , Térbio/metabolismo , Águas Residuárias/química
17.
J Inorg Biochem ; 180: 15-25, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29223826

RESUMO

Centrin is a member of the EF-hand super family of calcium-binding proteins, which can behave as a part of damage detector initiated the initiation of nucleotide excision repair (NER). Its self-assembly plays a causative role in fiber contraction associated with the cell division cycle and ciliogenesis. To explore the possible role of DNA in the process of centrin self-assembly, the aggregation properties of N-terminal domain of Euplotes octocarinatus centrin (N-EoCen) in the presence of DNA with or without metal ions are investigated. It is verified that metal ions, such as Ca2+ and Tb3+, can bind to N-EoCen with 2:1 stoichiometry by isothermal titration calorimetry (ITC). Importantly, this study reports that double strand DNA (dsDNA) is capable of binding N-EoCen, changing conformation of protein and modulating centrin aggregation, as demonstrated by extensive biophysical assays. Interestingly, the open conformation of protein induced by metal ions may be favour of the interaction of protein with dsDNA. Nevertheless, the randomly coiled single strand DNA (ssDNA) is completely inefficient to the aggregation regulation. Furthermore, results reveal that hydrophobic site could play important role in the process. This finding may link to the potent roles of centrin in the NER process.


Assuntos
Proteínas de Ligação ao Cálcio/metabolismo , DNA/metabolismo , Motivos EF Hand , Euplotes/metabolismo , Proteínas de Protozoários/metabolismo , Sequência de Aminoácidos , Sítios de Ligação , Cálcio/metabolismo , Proteínas de Ligação ao Cálcio/química , Calorimetria , Concentração de Íons de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Luz , Modelos Teóricos , Eletroforese em Gel de Poliacrilamida Nativa , Concentração Osmolar , Ligação Proteica , Conformação Proteica , Proteínas de Protozoários/química , Espalhamento de Radiação , Espectrometria de Fluorescência , Térbio/metabolismo
18.
Metallomics ; 9(12): 1796-1808, 2017 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-29114686

RESUMO

Centrins are Ca2+-binding proteins found throughout eukaryotic organisms. Xeroderma pigmentosum group C protein (XPC), a dominant component of the nuclear excision repair (NER) pathway, is a critical target protein of centrins. A 22-residue peptide (K842-R863) from XPC was used to investigate the effect of metal ions (Ca2+ and Tb3+) on the peptide binding of Euplotes octocarinatus centrin (EoCen) by isothermal titration calorimetry (ITC) and fluorescence spectroscopy. ITC and tryptophan spectrofluorimetric titrations revealed that metal ions (Ca2+ and Tb3+) could enhance the affinity between EoCen and the XPC peptide, and the enhanced effects were closely related to the ion potential of metal ions. Since the ion potential of Tb3+ (e/r = 0.0325) is larger than that of Ca2+ (e/r = 0.0202), the conformational change in the protein induced by Tb3+ is larger than that induced by Ca2+, and the enhanced affinity of Tb3+ is stronger than that of Ca2+. This interaction was driven by enthalpy in the presence of EDTA and enthalpy and entropy in the presence of Ca2+ or Tb3+. Similar to that observed in the presence of EDTA, the N-terminal domain did not participate in the interaction with the XPC peptide even in the presence of metal ions. Resonance light scattering (RLS) and the band shift in native polyacrylamide gel electrophoresis (PAGE) suggested that peptide binding resulted in the dissociation of EoCen aggregates and complex formation via the monomer-peptide form. Tb3+-Sensitized emission suggested that peptide binding in turn also had an impact on the Tb3+ binding of the protein: the C-terminal domain was slightly strengthened and the N-terminal domain was weakened about 225 fold. RLS and native PAGE indicated that the self-assembly induced by Tb3+ binding to the N-terminal domain of EoCen was inhibited in the presence of the XPC peptide. This study elucidates the molecular mechanism of EoCen function in the cellular context.


Assuntos
Proteínas de Ligação a DNA/metabolismo , Euplotes/metabolismo , Fragmentos de Peptídeos/metabolismo , Proteínas de Protozoários/metabolismo , Térbio/metabolismo , Combinação Trimetoprima e Sulfametoxazol/metabolismo , Sítios de Ligação , Proteínas de Ligação a DNA/química , Interações Hidrofóbicas e Hidrofílicas , Fragmentos de Peptídeos/química , Ligação Proteica , Proteínas de Protozoários/química , Térbio/química , Termodinâmica , Combinação Trimetoprima e Sulfametoxazol/química
19.
Chemosphere ; 181: 690-698, 2017 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-28476009

RESUMO

The wide applications cause a large amount of rare earth elements (REEs) to be released into the environment, and ultimately into the human body through food chain. Toxic effects of REEs on humans have been extensively studied, but their toxic effects and binding targets in cells are not understood. Delayed outward potassium channels (K+ channels) are good targets for exogenous substances or clinical drugs. To evaluate cellular toxicities of REEs and clarify toxic mechanisms, the toxicities of REEs on the K+ channel and their structural basis were investigated. The results showed that delayed outward potassium channels on the plasma membrane are the targets of REEs acting on living organisms, and the changes in the thermodynamic and kinetic characteristics of the K+ channel are the reasons of diseases induced by REEs. Two types of REEs, a light REE La3+ and a heavy REE Tb3+, displayed different intensity of toxicities on the K+ channel, in which the toxicity of Tb3+ was stronger than that of La3+. More interestingly, in comparison with that of heavy metal Cd2+, the cytotoxicities of the light and heavy REEs showed discriminative differences, and the cytotoxicity of Tb3+ was higher than that of Cd2+, while the cytotoxicity of La3+ was lower than that of Cd2+. These different cytotoxicities of La3+, Tb3+ and Cd2+ on human resulted from the varying binding abilities of the metals to this channel protein.


Assuntos
Canal de Potássio ERG1/efeitos dos fármacos , Metais Terras Raras/toxicidade , Cádmio/metabolismo , Cádmio/toxicidade , Membrana Celular/metabolismo , Meio Ambiente , Células HEK293 , Humanos , Lantânio/metabolismo , Lantânio/toxicidade , Metais Pesados/metabolismo , Metais Terras Raras/química , Ligação Proteica , Térbio/metabolismo , Térbio/toxicidade , Transfecção
20.
Biometals ; 29(6): 1047-1058, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27743149

RESUMO

Ciliate Euplotes octocarinatus centrin (EoCen) is an EF-hand calcium-binding protein closely related to the prototypical calcium sensor protein calmodulin. Four mutants (D37K, D73K, D110K and D146K) were created firstly to elucidate the importance of the first aspartic acid residues (Asp37, Asp73, Asp110 and Asp146) in the beginning of the four EF-loops of EoCen. Aromatic-sensitized Tb3+ fluorescence indicates that the aspartic acid residues are very important for the metal-binding of EoCen, except for Asp73 (in EF-loop II). Resonance light scattering (RLS) measurements for different metal ions (Ca2+ and Tb3+) binding proteins suggest that the order of four conserved aspartic acid residues for contributing to the self-assembly of EoCen is Asp37 > Asp146 > Asp110 > Asp73. Cross-linking experiment also exhibits that Asp37 and Asp146 play critical role in the self-assembly of EoCen. Asp37, in site I, which is located in the N-terminal domain, plays the most important role in the metal ion-dependent self-assembly of EoCen, and there is cooperativity between N-terminal and C-terminal domain (especially the site IV). In addition, the dependence of Tb3+ induced self-assembly of EoCen and the mutants on various factors, including ionic strength and pH, were characterized using RLS. Finally, 2-p-toluidinylnaphthalene-6-sulfonate (TNS) binding, ionic strength and pH control experiments indicate that in the process of EoCen self-assembly, molecular interactions are mediated by both electrostatic and hydrophobic forces, and the hydrophobic interaction has the important status.


Assuntos
Ácido Aspártico , Proteínas de Ligação ao Cálcio/química , Proteínas de Ligação ao Cálcio/metabolismo , Euplotes/química , Sequência de Aminoácidos , Ácido Aspártico/química , Sítios de Ligação , Proteínas de Ligação ao Cálcio/genética , Dicroísmo Circular , Sequência Conservada , Fluorescência , Concentração de Íons de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Íons/metabolismo , Mutação , Naftalenossulfonatos/metabolismo , Concentração Osmolar , Térbio/metabolismo
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