ABSTRACT
A novel series of indolocarbazoles were synthesized and their antiproliferative activity against HUVEC, LoVo, DLD-1 and ST-486 cell lines, was investigated. Those staurosporine analogs in which a substituted dimethylaminoalkoxy chain was attached to the indolic nitrogen showed interesting activity and selectivity with respect to HUVEC proliferation. The effect on capillary tube formation in 3-dimensional matrigel matrix was studied using the most active compounds. Evaluation of their in vivo anti-angiogenic activity in a murine Lewis lung cancer model was also analyzed.
Subject(s)
Angiogenesis Inhibitors/chemical synthesis , Lung Neoplasms/blood supply , Lung Neoplasms/drug therapy , Staurosporine/analogs & derivatives , Angiogenesis Inhibitors/chemistry , Angiogenesis Inhibitors/pharmacology , Animals , Capillaries/metabolism , Cell Line, Tumor , Cell Proliferation/drug effects , Collagen/pharmacology , Drug Combinations , Humans , Laminin/pharmacology , Magnetic Resonance Spectroscopy , Mice , Molecular Structure , Neovascularization, Pathologic/drug therapy , Proteoglycans/pharmacology , Spectrophotometry, Infrared , Staurosporine/chemical synthesis , Staurosporine/chemistry , Staurosporine/pharmacologyABSTRACT
Los tratamientos de las enfermedades tumorales o de las parasitarias presentanciertos aspectos químico-farmacéuticos comunes. En este trabajo se expone unestudio comparativo entre las estructuras químicas que muestran zonas o funcionescomunes de cada grupo terapéutico. La conclusión del mismo es que, cuandose dispone de un compuesto activo en una de estas áreas, merece la pena probarloen la otra
The treatments of neoplastic and parasitary diseases present some commonchemical and pharmacological profiles. In this paper, a comparative study betweenchemical structures of each therapeutic group that have similar functions is shown. The conclusion is that every new chemical with activity in any of these areas is asuitable candidate to be tested in the other one
Subject(s)
Humans , Male , Female , Intestinal Diseases, Parasitic/complications , Intestinal Diseases, Parasitic/diagnosis , Neoplasms/complications , Neoplasms/diagnosis , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/pharmacology , Proteins/biosynthesis , Emetine/biosynthesis , Drug Screening Assays, Antitumor/trends , Drug Screening Assays, Antitumor , Antimetabolites, Antineoplastic/chemical synthesis , Antimetabolites, Antineoplastic/pharmacology , Pyrimidines/chemical synthesis , Pyrimidines/pharmacology , Antiparasitic Agents/pharmacology , Antiparasitic Agents/pharmacokineticsABSTRACT
There are several procedures for the chemical discovery and design of new drugs from the point of view of the pharmaceutical or medicinal chemistry. They range from classical methods to the very new ones, such as molecular modeling or high throughput screening. In this review, we will consider some historical approaches based on the screening of natural products, the chances for luck, the systematic screening of new chemical entities and serendipity. Another group comprises rational design, as in the case of metabolic pathways, conformation versus configuration and, finally, a brief description on available new targets to be carried out. In each approach, the structure of some examples of clinical interest will be shown.
Subject(s)
Antineoplastic Agents/history , Biological Products/chemistry , Chemistry, Organic , Chemistry, Pharmaceutical/history , Drug Design , Drug Evaluation, Preclinical , Pharmaceutical Preparations/chemistry , Animals , Drug Screening Assays, Antitumor , History, 20th Century , Humans , Models, Chemical , Technology, PharmaceuticalABSTRACT
En este trabajo se establece el papel protagonista que el grupo sulfonamida ha tenido en el diseño de nuevos fármacos a lo largo de la historia. La sulfonamida es un grupo funcional que contiene el radical SO2NH2. Así, la sulfonamida puede ser considerada como un derivado de un ácido sulfónico, donde el grupo hidroxilo se ha sustituido por una amina. La aplicación de las sulfamidas en el tratamiento de enfermedades infecciosas ha sido el primer fruto de la combinación de la observación inteligente con la «serendipity»; sólo así se puede entender el descubrimiento de esta serie de fármacos, que surge a partir de la extracción de la anilina del alquitrán de la hulla, que realizó Runge, y que daría lugar posteriormente a la potente industria de los colorantes azoicos. En la actualidad existen numerosos medicamentos donde está presente este grupo mágico, entre los que se encuentran antibióticos, antimaláricos, antimicrobianos, diuréticos, hipoglucemiantes, antiinflamatorios, antihipertensivos, etc., poniendo de manifiesto el amplio espectro terapéutico de las sulfonamidas, como grupo funcional de interés terapéutico
The significant role of sulfonamide in the development of new drugs is shown in this article, through an overview of its history. Sulfonamide is an organic sulfur compound containing the radical SO2NH2. Then, any sulfonamide can be considered as derived from a sulfonic acid by replacing a hydroxyl group with an amine group. The treatment of infectious diseases with sulfamides has been the result of a combination of intelligent research and «serendipity»; this is the only way to explain the development of this drugs, starting from the aniline extraction by Runge and its evolution to give the azoic dyes manufacturing. Nowadays, this magic group is present in many drugs as antibiotics, antimalaric drugs, antimicrobial agents, diuretics, hypoglycemics, anti-inflammatory drugs, antihypertensive drugs, etc. showing the broad therapeutic field of sulfonamides as therapeutic function
Subject(s)
Humans , Sulfonamides/pharmacology , Communicable Diseases/drug therapy , Coloring Agents/pharmacologyABSTRACT
New compounds, structurally related to the potent protein kinase C inhibitor staurosporine, with a bisindolylpyrazolone framework and substituted on the pyrazolone nitrogens with N,N-dialkylaminoalkyl side chain, were synthesized and evaluated for growth-inhibitory properties in several human cell lines. Many showed inhibition of TNF-alpha production in response to the tumor promotor TPA on HL-60 cells. The apoptotic activity on HeLa cells has been examined for several of these compounds.
Subject(s)
Pyrazolones/chemical synthesis , Pyrazolones/pharmacology , Chromatography, Thin Layer , Crystallography, X-Ray , HL-60 Cells , Humans , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Structure , Pyrazolones/chemistry , Spectrometry, Mass, Electrospray Ionization , Spectrophotometry, UltravioletABSTRACT
Pyrazolopyridazine 1a was identified in a high-throughput screening carried out by BASF Bioresearch Corp. (Worcester, MA) as a potent inhibitor of CDK1/cyclin B and shown to have selectivity for the CDK family. Analogues of the lead compound have been synthesized and their antitumor activities have been tested. A molecular model of the complex between the lead compound and the CDK2 ATP binding site has been built using a combination of conformational search and automated docking techniques. The stability of the resulting complex has been assessed by molecular dynamics simulations and the experimental results obtained for the synthesized analogues have been rationalized on the basis of the proposed binding mode for compound 1a. As a result of the SAR study, monofuryl 1o has been synthesized and is one of the most active compounds against CDK1 of this series.
Subject(s)
Antineoplastic Agents/chemical synthesis , CDC2 Protein Kinase/antagonists & inhibitors , CDC2 Protein Kinase/chemistry , Pyrazoles/chemical synthesis , Pyridazines/chemical synthesis , Adenosine Triphosphate/chemistry , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Binding Sites , Cell Line, Tumor , Cyclin B/antagonists & inhibitors , Cyclin B/chemistry , Cyclin-Dependent Kinase 2/chemistry , Drug Screening Assays, Antitumor , Humans , Ligands , Models, Molecular , Pyrazoles/chemistry , Pyrazoles/pharmacology , Pyridazines/chemistry , Pyridazines/pharmacology , Structure-Activity Relationship , ThermodynamicsABSTRACT
Desde la mitad de los años treinta del siglo pasado, se ha considerado erróneamente que la Aspirina había sido descubierta por Felix Hoffmann, sin embargo recientes estudios reconocen a Arthur Eichengrün como el autor más importante. En este artículo se describe una breve historia del fármaco y cómo las pasiones políticas la modificaron
From the thirties of last century, the Aspirin has been wrongly considered as a Felix Hoffmann discovering. Nevertheless, recent research has put in evidence that the true inventor of this drug has been Arthur Eichengrün. In this paper, a short history of the drug is described, as well as the political interferences on it
Subject(s)
Aspirin/history , Proprietary Drug Name , Salicylates/chemical synthesis , Salicylates/history , Salicylates/therapeutic use , Plants, Medicinal/chemistry , International Nonproprietary Names for Pharmaceutical Substances , Aspirin/pharmacology , Aspirin/pharmacokinetics , Aspirin/therapeutic use , Salicylates/pharmacologyABSTRACT
A series of analogues related to picobenzide (CAS 51832-87-2) have been prepared and have been used as starting material to obtain new trisubstituted oxazole derivatives. Two compounds showed a promising pharmacological profile in screening tests of antipsychotic activity, since they affected apomorphine-induced hyperactivity without significant effects on stereotypies.
Subject(s)
Antipsychotic Agents/chemical synthesis , Antipsychotic Agents/pharmacology , Benzamides/chemical synthesis , Benzamides/pharmacology , Animals , Apomorphine/antagonists & inhibitors , Apomorphine/pharmacology , Behavior, Animal/drug effects , Dopamine Agonists/pharmacology , Drug Evaluation, Preclinical , Hyperkinesis/chemically induced , Hyperkinesis/prevention & control , Indicators and Reagents , Male , Mice , Motor Activity/drug effects , Rats , Rats, Sprague-Dawley , Stereotyped Behavior/drug effects , Structure-Activity RelationshipABSTRACT
The compound 6a is a novel bisoxazol derivative with high cytotoxic properties in vitro against different human tumor-derived cell lines and with similar efficiency against epithelial, haematopoietic and mesenchymal tumor cells. Although the molecular mechanism is not yet fully defined, cell cycle analysis revealed that 6a induces efficiently G0/G1 phase arrest in colon adenocarcinoma HT-29 cells in a dose- and time-dependent manner. Induction of cell death is observed, a possible explanation for the antiproliferative profile of the molecule. The compound was well tolerated at doses that allowed to examine its antitumor activity against human xenografts of the HT-29 cell line implanted s.c. in nude mice. Treatment of mice with 4 mg/kg of the compound resulted in a 60% inhibition of tumor growth. These observations support the use of 6a for the generation of more potent derivatives that could be used as new anticancer agents.
Subject(s)
Antineoplastic Agents/pharmacology , Apoptosis/drug effects , Cell Cycle/drug effects , Choline Kinase/antagonists & inhibitors , Enzyme Inhibitors/pharmacology , Animals , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/toxicity , Cell Division/drug effects , Enzyme Inhibitors/chemical synthesis , HT29 Cells , Humans , Male , Mice , Neoplasm Transplantation , Transplantation, HeterologousABSTRACT
A series of analogues of butyrolactone I, a natural product isolated from Aspergillus terreus that selectively inhibits the CDK2 and CDK1 kinases and that has been found to exhibit an interesting antiproliferative activity, have been synthesized. Its antitumor activity has been tested. Molecular models of the complex between butyrolactone I and the CDK2 active site have been built using a combination of conformational search and automated docking techniques. The stability of the resulting complexes has been assessed by molecular dynamics simulations and the experimental results obtained for the synthesized analogues are rationalized based on the molecular models.
Subject(s)
4-Butyrolactone/analogs & derivatives , Models, Molecular , 4-Butyrolactone/chemical synthesis , 4-Butyrolactone/chemistry , 4-Butyrolactone/pharmacology , Binding Sites , Cell Line, Tumor , Cell Proliferation/drug effects , Esters/chemical synthesis , Esters/chemistry , Humans , Protein Kinase Inhibitors/chemical synthesis , Protein Kinase Inhibitors/chemistry , Protein Kinase Inhibitors/pharmacology , Protein Structure, TertiaryABSTRACT
A series of quinoline derivatives as aza analogues of the naphthalene chromophore and a series of "nonfused" tricyclic aromatic systems, in particular 5-arylquinolines and 5- or 6-aryl and heteroaryl naphthalene systems, were synthesized and evaluated for growth-inhibitory properties in several human cell lines. The analysis of quantitative structure-antitumor activity relationships for the growth-inhibitory properties is also reported. Findings suggest that these compounds may not express their cytotoxicity via interaction on DNA.
Subject(s)
Antineoplastic Agents/chemical synthesis , Aza Compounds/chemical synthesis , Heterocyclic Compounds, 3-Ring/chemical synthesis , Imides/chemical synthesis , Naphthalenes/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Aza Compounds/chemistry , Aza Compounds/pharmacology , Cell Line, Tumor , Drug Screening Assays, Antitumor , Heterocyclic Compounds, 3-Ring/chemistry , Heterocyclic Compounds, 3-Ring/pharmacology , Humans , Imides/chemistry , Imides/pharmacology , Naphthalenes/chemistry , Naphthalenes/pharmacology , Quantitative Structure-Activity Relationship , Quinolines/chemical synthesis , Quinolines/chemistry , Quinolines/pharmacologyABSTRACT
Amonafide- and elinafide-related mono and bisintercalators, modified by the introduction of a pi-excedent furan or thiophene ring fused to the naphthalimide moiety, have been synthesized. These compounds have shown an interesting antitumor profile. The best compound, 9, was 2.5-fold more potent than elinafide against human colon carcinoma cells (HT-29). Molecular dynamic simulations and physicochemical experiments have demonstrated that these compounds are capable of forming stable DNA complexes. These results, together with those previously reported by us for imidazo- and pyrazinonaphthalimide analogues, have prompted us to propose that the DNA binding process does not depend on the electronic nature of the fused heterocycle.
Subject(s)
Amides/chemical synthesis , DNA/chemistry , Imides/chemical synthesis , Intercalating Agents/chemical synthesis , Isoquinolines/chemical synthesis , Adenine , Amides/chemistry , Amides/pharmacology , Animals , Cell Line, Tumor , Drug Screening Assays, Antitumor , Furans/chemical synthesis , Furans/chemistry , Furans/pharmacology , Humans , Imides/chemistry , Imides/pharmacology , Intercalating Agents/chemistry , Intercalating Agents/pharmacology , Isoquinolines/chemistry , Isoquinolines/pharmacology , Mice , Mice, Nude , Models, Molecular , Naphthalimides , Neoplasm Transplantation , Organophosphonates , Structure-Activity Relationship , Thiophenes/chemical synthesis , Thiophenes/chemistry , Thiophenes/pharmacology , Transplantation, HeterologousABSTRACT
Bifunctional DNA intercalating agents have long attracted considerable attention as anticancer agents. One of the lead compounds in this category is the dimeric antitumor drug elinafide, composed of two tricyclic naphthalimide chromophores separated by an aminoalkyl linker chain optimally designed to permit bisintercalation of the drug into DNA. In an effort to optimize the DNA recognition capacity, different series of elinafide analogues have been prepared by extending the surface of the planar drug chromophore which is important for DNA sequence recognition. We report here a detailed investigation of the DNA sequence preference of three tetracyclic monomeric or dimeric pyrazinonaphthalimide derivatives. Melting temperature measurements and surface plasmon resonance (SPR) studies indicate that the dimerization of the tetracyclic planar chromophore considerably augments the affinity of the drug for DNA, polynucleotides, or hairpin oligonucleotides and promotes selective interaction with G.C sites. The (CH(2))(2)NH(CH(2))(3)NH(CH(2))(2) connector stabilizes the drug-DNA complexes. The methylation of the two nitrogen atoms of this linker chain reduces the binding affinity and increases the dissociation rates of the drug-DNA complexes by a factor of 10. DNase I footprinting experiments were used to investigate the sequence selectivity of the drugs, demonstrating highly preferential binding to G.C-rich sequences. It also served to select a high-affinity site encompassing the sequence 5'-GACGGCCAG which was then introduced into a biotin-labeled hairpin oligonucleotide to accurately measure the binding parameters by SPR. The affinity constant of the unmethylated dimer for this sequence is 500 times higher than that of the monomer compound and approximately 10 times higher than that of the methylated dimer. The DNA groove accessibility was also probed with three related oligonucleotides carrying G --> c(7)G, G --> I, and C --> M substitutions. The level of drug binding to the two hairpin oligonucleotides containing 7-deazaguanine (c(7)G) or 5-methylcytosine (M) residues is unchanged or only slightly reduced compared to that of the unmodified target. In contrast, incorporation of inosine (I) residues considerably decreases the extent of drug binding or even abolishes the interaction as is the case with the monomer. The pyrazinonaphthalimide derivatives are thus much more sensitive to the deletion of the exocyclic guanine 2-amino group exposed in the minor groove of the duplex than to the modification of the major groove elements. The complementary SPR footprinting methodology combining site selection and quantitative DNA affinity analysis constitutes a reliable method for dissecting the DNA sequence selectivity profile of reversible DNA binding small molecules.
Subject(s)
Amides/chemistry , Antineoplastic Agents/chemistry , DNA/chemistry , Intercalating Agents/chemistry , Isoquinolines/chemistry , Mesylates/chemistry , Adenine/chemistry , Animals , Base Pairing , Base Sequence , Binding Sites , Cattle , Cytosine/chemistry , Deoxyribonuclease I/chemistry , Dimerization , Guanine/chemistry , Molecular Sequence Data , Nucleic Acid Conformation , Surface Plasmon Resonance/methods , Thymine/chemistryABSTRACT
A novel series of mono and bisnaphthalimides was synthesized and their antiproliferative activities were evaluated against three tumor cell lines. Bisnaphthalimides 3 and 4, bearing a pyrazine ring fused to the naphthalimide system, showed activities in the order of 10(-8) microM, similar to elinafide. DNA binding properties and the ability to induce DNA damage were studied for some of the most active compounds.
Subject(s)
Antineoplastic Agents/chemical synthesis , DNA/chemistry , Naphthalenes/chemical synthesis , Naphthalenes/pharmacology , Antineoplastic Agents/pharmacology , Cell Division/drug effects , Cell Line, Tumor , Comet Assay , DNA Damage , Humans , Intercalating Agents/chemical synthesis , Intercalating Agents/pharmacology , Naphthalenes/chemistry , Structure-Activity Relationship , Topoisomerase I Inhibitors , Topoisomerase II InhibitorsABSTRACT
Bisnaphthalimides represent a promising group of DNA-targeted anticancer agents. In this series, the lead compounds elinafide and bisnafide have reached clinical trials, and the search for more potent analogues remains a priority. In the course of a medicinal chemistry program aimed at discovering novel antitumor drugs based on the naphthalimide skeleton, different dimeric molecules containing two tetracyclic neutral DNA intercalating chromophores were synthesized. The naphthalimide unit has been fused to a benzene ring (azonafide derivatives), an imidazole, a pyrazine, or, as reported here, a furan ring which increases the planar surface of the chromophore and enhances its stacking properties. We report a detailed investigation of the DNA binding capacity of the dimeric molecule MCI3335 composed of two furonaphthalimide units connected by a 12 A long amino alkyl linker [(CH(2))(2)-NH-(CH(2))(3)-NH-(CH(2))(2)] identical to that of elinafide. Qualitative and quantitative binding studies, in particular using surface plasmon resonance, establish that the dimer binds considerably more tightly to DNA (up to 1000 times) than the corresponding monomer and exhibits a higher sequence selectivity for GC-rich sequences. DNase I footprinting experiments attest that the dimer, and to a lesser extent the monomer, preferentially intercalate at GC sites. The strong binding interaction between the drugs and DNA perturbs the relaxation of supercoiled DNA by topoisomerases, but the test compounds do not promote DNA cleavage by topoisomerase I or II. Despite the lack of poisoning effect toward topoisomerase II, MCI3335 displays a very high cytotoxicity toward CEM human leukemia cells, with an IC(50) in the low nanomolar range, approximately 4 times inferior to that of the reference drug elinafide. Confocal microscopy observations indicate that the monomer shows a stronger tendency to accumulate in the cell nuclei than the dimer. The extremely high cytotoxic potential of MCI3335 is attributed to its enhanced capacity to bind to DNA and to inhibit DNA synthesis, as evidenced by flow cytometry experiments using the BrdU assay. The results provide novel mechanistic information that furthers the understanding of the structure-activity relationships in the bisnaphthalimide series and identify MCI3335 as a novel lead compound for further preclinical investigations.
Subject(s)
DNA/metabolism , Enzyme Inhibitors/metabolism , Imides/metabolism , Topoisomerase I Inhibitors , Topoisomerase II Inhibitors , Base Sequence , DNA Primers , Enzyme Inhibitors/pharmacology , Imides/pharmacology , Surface Plasmon ResonanceABSTRACT
A series of mono and bisintercalators based on the 5,8-dihydrobenz[de]imidazo[4,5-g]isoquinoline-4,6-dione system were synthesized and evaluated for growth inhibitory properties in several human cell lines. All target compounds showed activity in the micromolar range. Representative compounds were evaluated using UV--vis spectroscopy and viscosimetric determinations, showing that they behave as DNA intercalators. Molecular modeling techniques were used in order to rationalize the moderate activity observed for bisnaphthalimides.
Subject(s)
Antineoplastic Agents/chemical synthesis , Heterocyclic Compounds, 4 or More Rings/chemical synthesis , Intercalating Agents/chemical synthesis , Naphthalenes/chemical synthesis , Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Drug Screening Assays, Antitumor , Heterocyclic Compounds, 4 or More Rings/chemistry , Heterocyclic Compounds, 4 or More Rings/pharmacology , Humans , Intercalating Agents/chemistry , Intercalating Agents/pharmacology , Models, Molecular , Naphthalenes/chemistry , Naphthalenes/pharmacology , Spectrophotometry, Ultraviolet , Structure-Activity Relationship , Tumor Cells, CulturedABSTRACT
A new synthetic methodology to provide cis-2-(1H-imidazol-4-yl)-cyclopropane carboxylic acids is described. These cyclopropanes are useful for the preparation of novel H(3) receptor agents.
Subject(s)
Histamine Antagonists/chemical synthesis , Receptors, Histamine H3/drug effects , Animals , Brain Chemistry , Carboxylic Acids/chemical synthesis , Carboxylic Acids/pharmacology , Cyclopropanes/chemical synthesis , Cyclopropanes/pharmacology , Histamine Antagonists/pharmacology , Ligands , Methylhistamines/metabolism , Radioligand Assay , Rats , Structure-Activity RelationshipABSTRACT
A series of dendritic polyamines-(imide-DNA-intercalators) conjugates with different connectivity in their basic chain were synthesised and evaluated as antitumour compounds. Although their antiproliferative activity against HT-29 was not significant, conjugates 13 and 16 showed a promising profile as inhibitors of Lck.
Subject(s)
Antineoplastic Agents/chemical synthesis , Intercalating Agents/chemical synthesis , Polyamines/chemical synthesis , Antineoplastic Agents/pharmacology , Cell Division/drug effects , Drug Screening Assays, Antitumor , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Humans , Imides/chemical synthesis , Imides/pharmacology , Inhibitory Concentration 50 , Intercalating Agents/pharmacology , Lymphocyte Specific Protein Tyrosine Kinase p56(lck)/antagonists & inhibitors , Polyamines/pharmacology , Structure-Activity Relationship , Tumor Cells, CulturedABSTRACT
A series of bis([(9-oxo-9,10-dihydroacridine-4-carbonyl)amino]alkyl) alkylamines have been prepared and their antiproliferative properties have been tested against HT-29 cell lines. Compounds 6b and 6d showed an interesting cytotoxic profile and were subjected to further cytotoxic evaluation, DNA binding properties and molecular modelling studies. The evaluation of the cytotoxic activity of compounds 6b and 6d against pairs of cisplatin-sensitive and -resistant ovarian tumour cells shows that both compounds may be endowed with interesting antitumour properties because they are able to circumvent cisplatin resistance in A2780cisR, CH1cisR and Pam 212-ras tumour cells. On the other hand, DNA binding data indicate that compounds 6b and 6d are able to intercalate stronger than acridine within the double helix. Both compounds displace ethidium bromide with an efficiency ten times higher than acridine from several linear double-stranded DNAs and induce 43 degrees unwinding in supercoiled pBR322 DNA while acridine unwinds pBR322 DNA by only 24 degrees. Altogether these data indicate that the significant conformational changes induced by compounds 6b and 6d in the double helix are due to a bis-intercalative DNA binding mode. We propose that binding to DNA through bisintercalation might be at least in part responsible for the remarkable cytotoxic properties of these acridine derivatives. The complex of 6b with d(GCGCGC)(2) in the four possible orientations that the ligand can adopt when binding to the DNA hexamer have been modelled and subjected to molecular dynamics simulations with the aim of evaluating the binding preferences of this bisintercalating agent into the DNA molecule. The predictions suggest that 6b binds to d(GCGCGC)(2) with a parallel orientation of the chromophores relative to each other and with a preference for binding through the minor groove of the hexamer. The possible relevance of these findings to the process of bisintercalation and the antitumour profile of these compounds is discussed in this paper.